Equivalence class DNA_4.0_61021.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1ZS4|1|T+ 1ZS4|1|U (rep) | DNA - 27mer | Structure of bacteriophage lambda cII protein in complex with DNA | X-ray diffraction | 1.7 | 2005-08-23 | ||||
| 2 | 1K78|1|C+ 1K78|1|D | Pax5/Ets Binding Site on the mb-1 promoter | Pax5(1-149)+Ets-1(331-440)+DNA | X-ray diffraction | 2.25 | 2002-01-04 | ||||
| 3 | 1K78|1|G+ 1K78|1|H | Pax5/Ets Binding Site on the mb-1 promoter | Pax5(1-149)+Ets-1(331-440)+DNA | X-ray diffraction | 2.25 | 2002-01-04 | ||||
| 4 | 3GZ6|1|C+ 3GZ6|1|D | DNA (27-MER) | Crystal structure of Shewanella oneidensis NrtR complexed with a 27mer DNA | X-ray diffraction | 2.901 | 2009-06-09 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1K78|1|C+1K78|1|D | Pax5(1-149)+Ets-1(331-440)+DNA | X-RAY DIFFRACTION | 2.25 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription,winged helix/forkhead |
| 2 | 1K78|1|G+1K78|1|H | Pax5(1-149)+Ets-1(331-440)+DNA | X-RAY DIFFRACTION | 2.25 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription,winged helix/forkhead |
| 3 | 1ZS4|1|T+1ZS4|1|U | Structure of bacteriophage lambda cII protein in complex with DNA | X-RAY DIFFRACTION | 1.7 | 27 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 4 | 3GZ6|1|C+3GZ6|1|D | Crystal structure of Shewanella oneidensis NrtR complexed with a 27mer DNA | X-RAY DIFFRACTION | 2.901 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
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