Equivalence class DNA_4.0_56218.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1XVK|1|A (rep) | 5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3' | X-ray structure of an Echinomycin-(GCGTACGC)2 complex | X-ray diffraction | 1.26 | 2005-04-12 | ||||
| 2 | 3GO3|1|A+ 3GO3|1|B | 5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3' | Interactions of an echinomycin-DNA complex with manganese(II) ions | X-ray diffraction | 1.1 | 2009-03-31 | ||||
| 3 | 2ADW|1|E+ 2ADW|1|G | 5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3' | Crystal structure of Echinomycin-(ACGTACGT)2 solved by SAD | X-ray diffraction | 1.6 | 2006-03-28 | ||||
| 4 | 1VS2|1|A | 5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3' | Interactions of quinoxaline antibiotic and DNA: the molecular structure of a TRIOSTIN A-D(GCGTACGC) complex | X-ray diffraction | 2 | 2006-06-27 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3GO3|1|A+3GO3|1|B | Interactions of an echinomycin-DNA complex with manganese(II) ions | X-RAY DIFFRACTION | 1.1 | 8 | bis-intercalating,double helix,ligand,structure | |
| 2 | 1XVK|1|A | X-ray structure of an Echinomycin-(GCGTACGC)2 complex | X-RAY DIFFRACTION | 1.26 | 8 | bis-intercalating,double helix,ligand,structure | |
| 3 | 2ADW|1|E+2ADW|1|G | Crystal structure of Echinomycin-(ACGTACGT)2 solved by SAD | X-RAY DIFFRACTION | 1.6 | 8 | bis-intercalating,double helix,ligand,structure | |
| 4 | 1VS2|1|A | Interactions of quinoxaline antibiotic and DNA: the molecular structure of a TRIOSTIN A-D(GCGTACGC) complex | X-RAY DIFFRACTION | 2 | 8 | double helix,structure |
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