Equivalence class DNA_4.0_53535.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1OWG|1|C+ 1OWG|1|E+ 1OWG|1|D (rep) | Phage lambda H' site, 5'-D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*AP*GP*CP*AP*CP*C)-3', 5'-D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)-3' | Crystal structure of WT IHF complexed with an altered H' site (T44A) | X-ray diffraction | 2.1 | 2003-07-15 | ||||
| 2 | 1IHF|1|C+ 1IHF|1|E+ 1IHF|1|D | DNA (35-MER), DNA (5'-D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*TP*GP*C P*AP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)-3') | INTEGRATION HOST FACTOR/DNA COMPLEX | X-ray diffraction | 2.5 | 1997-02-12 | ||||
| 3 | 1OUZ|1|C+ 1OUZ|1|E+ 1OUZ|1|D | Phage lambda H' site, 5'-D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*AP*GP*CP*AP*CP*C)-3', 5'-D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)-3' | Crystal structure of a mutant IHF (BetaE44A) complexed with a variant H' Site (T44A) | X-ray diffraction | 2.41 | 2003-07-15 | ||||
| 4 | 2IIE|1|C+ 2IIE|1|E+ 2IIE|1|D | Phage P H' site, DNA (5'-D(*DGP*DGP*DCP*DCP*DAP*DAP*DAP*DAP*DAP*DAP*DGP*DCP*DAP*DTP*DT)-3'), DNA (5'-D(*DGP*DCP*DTP*DTP*DAP*DTP*DCP*DAP*DAP*DTP*DTP*DTP*DGP*DTP*DTP*DGP*DCP*DAP*DCP*DC)-3') | synthetic construct | single chain Integration Host Factor protein (scIHF2) in complex with DNA | X-ray diffraction | 2.41 | 2007-02-20 | |||
| 5 | 2IIF|1|C+ 2IIF|1|E+ 2IIF|1|D | Phage P H' site, DNA (5'-D(*DGP*DGP*DCP*DCP*DAP*DAP*DAP*DAP*DAP*DAP*DGP*DCP*DAP*DTP*DT)-3'), DNA (5'-D(*DGP*DCP*DTP*DTP*DAP*DTP*DCP*DAP*DAP*DTP*DTP*DTP*DGP*DTP*DTP*DGP*DCP*DAP*DCP*DC)-3') | synthetic construct | single chain Integration Host Factor mutant protein (scIHF2-K45aE) in complex with DNA | X-ray diffraction | 2.72 | 2007-02-20 | |||
| 6 | 1OWF|1|C+ 1OWF|1|E+ 1OWF|1|D | Phage lambda H' site, 5'-D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*TP*GP*CP*AP*CP*C)-3', 5'-D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)-3' | Crystal structure of a mutant IHF (BetaE44A) complexed with the native H' Site | X-ray diffraction | 1.95 | 2003-07-15 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2IIF|1|C+2IIF|1|E+2IIF|1|D | single chain Integration Host Factor mutant protein (scIHF2-K45aE) in complex with DNA | X-RAY DIFFRACTION | 2.72 | 35 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),IHF-like,regulatory,transcription |
| 2 | 2IIE|1|C+2IIE|1|E+2IIE|1|D | single chain Integration Host Factor protein (scIHF2) in complex with DNA | X-RAY DIFFRACTION | 2.41 | 35 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),IHF-like,regulatory,transcription |
| 3 | 1OWF|1|C+1OWF|1|E+1OWF|1|D | Crystal structure of a mutant IHF (BetaE44A) complexed with the native H' Site | X-RAY DIFFRACTION | 1.95 | 35 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),IHF-like,regulatory,transcription |
| 4 | 1IHF|1|C+1IHF|1|E+1IHF|1|D | INTEGRATION HOST FACTOR/DNA COMPLEX | X-RAY DIFFRACTION | 2.5 | 35 | B-form double helix,double helix,structure | regulatory,transcription |
| 5 | 1OWG|1|C+1OWG|1|E+1OWG|1|D | Crystal structure of WT IHF complexed with an altered H' site (T44A) | X-RAY DIFFRACTION | 2.1 | 35 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),IHF-like,regulatory,transcription |
| 6 | 1OUZ|1|C+1OUZ|1|E+1OUZ|1|D | Crystal structure of a mutant IHF (BetaE44A) complexed with a variant H' Site (T44A) | X-RAY DIFFRACTION | 2.41 | 35 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),IHF-like,regulatory,transcription |
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