Equivalence class DNA_4.0_51477.1 Current
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 3K0S|1|E+ 3K0S|1|F (rep) | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP*CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP*CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP*GP*AP*C*AP*CP*T*GP*GP*TP*GP*CP*TP*TP*GP*GP*CP*AP*GP*CP*T)-3' | Crystal structure of E.coli DNA mismatch repair protein MutS, D693N mutant, in complex with GT mismatched DNA | X-ray diffraction | 2.2 | 2010-02-16 | ||||
2 | 1W7A|1|E+ 1W7A|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP*CP*CP*TP* AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP *GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP*GP*GP*CP*AP*GP* CP*T)-3' | ATP bound MutS | X-ray diffraction | 2.27 | 2004-09-10 | ||||
3 | 1E3M|1|E+ 1E3M|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP*CP*AP*CP*CP*AP* GP*TP*GP*TP*CP*AP*GP*CP*GP*TP*CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP*GP*AP*CP*AP*CP* TP*GP*GP*TP*GP*CP*TP*TP*GP*GP*CP*AP*GP*CP*T)-3' | Escherichia coli | The crystal structure of E. coli MutS binding to DNA with a G:T mismatch | X-ray diffraction | 2.2 | 2000-11-01 | |||
4 | 1OH6|1|E+ 1OH6|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*AP*GP *CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP* CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP *GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*AP*TP*GP*GP* CP*AP*GP*CP*T)-3' | synthetic construct | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN A:A MISMATCH | X-ray diffraction | 2.4 | 2003-08-08 | |||
5 | 1NG9|1|E+ 1NG9|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP*CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP*CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP*GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP*GP*GP*CP*AP*GP*CP*T)-3' | E.coli MutS R697A: an ATPase-asymmetry mutant | X-ray diffraction | 2.6 | 2003-02-11 | ||||
6 | 1OH7|1|E+ 1OH7|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP *CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP *GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*GP*TP*GP*GP *CP*AP*GP*CP*T)-3' | synthetic construct | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A G:G MISMATCH | X-ray diffraction | 2.5 | 2003-08-08 | |||
7 | 3OS1|1|T | DNA (5'-D(*CP*CP*CP*GP*AP*GP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*CP*TP*CP*GP*GP*G)-3') | PFV target capture complex (TCC) at 2.97 A resolution | X-ray diffraction | 2.97 | 2010-11-17 | ||||
8 | 1OH5|1|E+ 1OH5|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*CP*GP *CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP *CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP *GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*AP*TP*GP*GP *CP*AP*GP*CP*T)-3' | synthetic construct | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A C:A MISMATCH | X-ray diffraction | 2.9 | 2003-08-08 | |||
9 | 3OS2|1|T | DNA (5'-D(*CP*CP*CP*GP*AP*GP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*CP*TP*CP*GP*GP*G)-3') | PFV target capture complex (TCC) at 3.32 A resolution | X-ray diffraction | 3.32 | 2010-11-17 | ||||
10 | 2HZV|1|I+ 2HZV|1|J | 5'-D(*AP*GP*TP*AP*TP*GP*AP*CP*GP*AP*AP*TP*AP*CP*TP*TP*AP*AP*AP*AP*TP*CP*GP*TP*CP*AP*TP*AP*CP*T)-3', 5'-D(*AP*GP*TP*AP*TP*GP*AP*CP*GP*AP*TP*TP*TP*TP*AP*AP*GP*TP*AP*TP*TP*CP*GP*TP*CP*AP*TP*AP*CP*T)-3' | NikR-operator DNA complex | X-ray diffraction | 3.1 | 2006-08-22 | ||||
11 | 2HZV|1|K+ 2HZV|1|L | 5'-D(*AP*GP*TP*AP*TP*GP*AP*CP*GP*AP*AP*TP*AP*CP*TP*TP*AP*AP*AP*AP*TP*CP*GP*TP*CP*AP*TP*AP*CP*T)-3', 5'-D(*AP*GP*TP*AP*TP*GP*AP*CP*GP*AP*TP*TP*TP*TP*AP*AP*GP*TP*AP*TP*TP*CP*GP*TP*CP*AP*TP*AP*CP*T)-3' | NikR-operator DNA complex | X-ray diffraction | 3.1 | 2006-08-22 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 3OS1|1|T | PFV target capture complex (TCC) at 2.97 A resolution | X-RAY DIFFRACTION | 2.97 | 30 | enzyme,recombinase | |
2 | 1OH6|1|E+1OH6|1|F | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN A:A MISMATCH | X-RAY DIFFRACTION | 2.4 | 30 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
3 | 1OH7|1|E+1OH7|1|F | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A G:G MISMATCH | X-RAY DIFFRACTION | 2.5 | 30 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
4 | 3K0S|1|E+3K0S|1|F | Crystal structure of E.coli DNA mismatch repair protein MutS, D693N mutant, in complex with GT mismatched DNA | X-RAY DIFFRACTION | 2.2 | 30 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory |
5 | 1W7A|1|E+1W7A|1|F | ATP bound MutS | X-RAY DIFFRACTION | 2.27 | 30 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory |
6 | 1E3M|1|E+1E3M|1|F | The crystal structure of E. coli MutS binding to DNA with a G:T mismatch | X-RAY DIFFRACTION | 2.2 | 30 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory |
7 | 1NG9|1|E+1NG9|1|F | E.coli MutS R697A: an ATPase-asymmetry mutant | X-RAY DIFFRACTION | 2.6 | 30 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
8 | 1OH5|1|E+1OH5|1|F | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A C:A MISMATCH | X-RAY DIFFRACTION | 2.9 | 30 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
9 | 2HZV|1|I+2HZV|1|J | NikR-operator DNA complex | X-RAY DIFFRACTION | 3.1 | 30 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription |
10 | 2HZV|1|K+2HZV|1|L | NikR-operator DNA complex | X-RAY DIFFRACTION | 3.1 | 30 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription |
11 | 3OS2|1|T | PFV target capture complex (TCC) at 3.32 A resolution | X-RAY DIFFRACTION | 3.32 | 30 | enzyme,recombinase |
Coloring options: