Equivalence class DNA_4.0_49156.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1R8E|1|B (rep) | 5'-D(*GP*AP*CP*CP*CP*TP*CP*CP*CP*CP*TP*TP*AP*GP*GP*GP*GP*AP*GP*GP*GP*TP*C)-3' | Crystal Structure of BmrR Bound to DNA at 2.4A Resolution | X-ray diffraction | 2.4 | 2004-08-17 | ||||
| 2 | 3Q5P|1|B | 23 bp BmrR promoter DNA | Crystal structure of BmrR bound to Tetracycline | X-ray diffraction | 2.942 | 2011-06-15 | ||||
| 3 | 3Q2Y|1|B | 23 bp promoter | Crystal Structure of BmrR bound to ethidium | X-ray diffraction | 2.95 | 2011-06-15 | ||||
| 4 | 3Q3D|1|B | BmrR promoter DNA | Crystal structure of BmrR bound to puromycin | X-ray diffraction | 2.79 | 2011-06-15 | ||||
| 5 | 3Q5S|1|B | 23 bp promoter DNA | Crystal structure of BmrR bound to Acetylcholine | X-ray diffraction | 3.1 | 2011-06-15 | ||||
| 6 | 3Q1M|1|B | 23 bp promoter DNA | Crystal Structure of BmrR Dimer bound to DNA and the ligand 4-amino-quinaldine | X-ray diffraction | 3.2 | 2011-06-15 |
Release history
| Release | 0.22 |
|---|---|
| Date | 2011-06-18 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1R8E|1|B | Crystal Structure of BmrR Bound to DNA at 2.4A Resolution | X-RAY DIFFRACTION | 2.4 | 23 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 2 | 3Q5S|1|B | Crystal structure of BmrR bound to Acetylcholine | X-RAY DIFFRACTION | 3.1 | 24 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 3 | 3Q2Y|1|B | Crystal Structure of BmrR bound to ethidium | X-RAY DIFFRACTION | 2.95 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 4 | 3Q3D|1|B | Crystal structure of BmrR bound to puromycin | X-RAY DIFFRACTION | 2.79 | 25 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 5 | 3Q5P|1|B | Crystal structure of BmrR bound to Tetracycline | X-RAY DIFFRACTION | 2.942 | 27 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 6 | 3Q1M|1|B | Crystal Structure of BmrR Dimer bound to DNA and the ligand 4-amino-quinaldine | X-RAY DIFFRACTION | 3.2 | 23 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
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