Equivalence class DNA_4.0_48343.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3OMJ|1|A+ 3OMJ|1|B (rep) | 5'-D(*CP*(C38)P*AP*GP*TP*AP*CP*TP*GP*G)-3' | Structural Basis for Cyclic Py-Im Polyamide Allosteric Inhibition of Nuclear Receptor Binding | X-ray diffraction | 0.95 | 2010-09-08 | ||||
| 2 | 1KGK|1|A+ 1KGK|1|B | 5'-D(*GP*(GCK)P*GP*TP*AP*TP*AP*CP*GP*C)-3' | Direct Observation of a Cytosine Analog that Forms Five Hydrogen Bonds to Guanosine; Guanyl G-Clamp | X-ray diffraction | 1 | 2001-12-21 | ||||
| 3 | 1DPL|1|A+ 1DPL|1|B | 5'-D(*GP*CP*GP*TP*AP*(T23)P*AP*CP*GP*C)-3' | A-DNA DECAMER GCGTA(T23)TACGC WITH INCORPORATED 2'-METHOXY-3'-METHYLENEPHOSPHATE-THYMIDINE | X-ray diffraction | 0.83 | 2000-04-04 | ||||
| 4 | 3I5E|1|A | 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G)-3' | Allosteric Modulation of DNA by Small Molecules | X-ray diffraction | 0.98 | 2009-07-28 | ||||
| 5 | 1EN8|1|A | DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3') | 1 A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM | X-ray diffraction | 0.985 | 2000-09-25 | ||||
| 6 | 1ENE|1|A | DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3') | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. | X-ray diffraction | 0.985 | 2000-09-25 | ||||
| 7 | 3I5L|1|A+ 3I5L|1|B | 5'-D(*CP*CP*AP*GP*GP*(C38)P*CP*TP*GP*G)-3' | Allosteric Modulation of DNA by Small Molecules | X-ray diffraction | 1.18 | 2009-07-28 | ||||
| 8 | 3EY2|1|A+ 3EY2|1|B | 5'-D(*GP*CP*GP*TP*AP*(USM)P*AP*CP*GP*C)-3' | A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution | X-ray diffraction | 1.04 | 2009-04-28 | ||||
| 9 | 1EN9|1|A | DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3') | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. | X-ray diffraction | 0.985 | 2000-09-25 | ||||
| 10 | 1MLX|1|A+ 1MLX|1|B | 5'-D(*GP*CP*GP*TP*AP*SMTP*AP*CP*GP*C)-3' | Crystal Structure Analysis of a 2'-O-[2-(Methylthio)-ethyl]-Modified Oligodeoxynucleotide Duplex | X-ray diffraction | 1.25 | 2002-12-04 | ||||
| 11 | 3OZ5|1|A+ 3OZ5|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(UMX)P*AP*CP*GP*C)-3') | S-Methyl Carbocyclic LNA | X-ray diffraction | 1.36 | 2010-11-24 | ||||
| 12 | 2FIJ|1|A+ 2FIJ|1|B | 5'-D(*GP*CP*GP*TP*(A2M)P*(UAR)P*AP*CP*GP*C)-3' | Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-aU-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and Arabino-Uridine (aU) | X-ray diffraction | 1.19 | 2006-05-23 | ||||
| 13 | 1M77|1|A | 5'-D(*CP*CP*CP*GP*AP*TP*CP*GP*GP*G)-3' | Near Atomic Resolution Crystal Structure of an A-DNA Decamer d(CCCGATCGGG): Cobalt Hexammine Interactions with A-DNA | X-ray diffraction | 1.25 | 2003-01-07 | ||||
| 14 | 1PWF|1|A+ 1PWF|1|B | 5'-D(*GP*CP*GP*TP*AP*(2MU)P*(FA2)P*CP*GP*C)-3' | One Sugar Pucker Fits All: Pairing Versatility Despite Conformational Uniformity in TNA | X-ray diffraction | 1.16 | 2004-07-13 | ||||
| 15 | 1R3G|1|A+ 1R3G|1|B | 5'-D(*GP*CP*GP*TP*AP*(GMU)P*AP*CP*GP*C)-3') | 1.16A X-ray structure of the synthetic DNA fragment with the incorporated 2'-O-[(2-Guanidinium)ethyl]-5-methyluridine residues | X-ray diffraction | 1.16 | 2003-10-21 | ||||
| 16 | 1I5W|1|A+ 1I5W|1|B | 5'-D(*GP*CP*GP*TP*AP*(TLN)P*AP*CP*GP*C)-3' | A-DNA DECAMER GCGTA(TLN)ACGC | X-ray diffraction | 1.4 | 2001-04-04 | ||||
| 17 | 1Y84|1|A+ 1Y84|1|B | 5'-D(*GP*CP*GP*TP*AP*(EIT)P*AP*CP*GP*C)-3' | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(imidazolyl)ethyl] Thymidine (T*) | X-ray diffraction | 1.6 | 2005-06-28 | ||||
| 18 | 1Y9F|1|A+ 1Y9F|1|B | 5'-D(*GP*CP*GP*TP*AP*(2AT)P*AP*CP*GP*C)-3') | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-allyl Thymidine (T*) | X-ray diffraction | 1.6 | 2005-06-28 | ||||
| 19 | 1YB9|1|A+ 1YB9|1|B | 5'-D(*GP*CP*GP*TP*AP*(2OT)P*AP*CP*GP*C)-3') | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(N,N-dimethylaminooxy)ethyl] Thymidine (T*) | X-ray diffraction | 1.65 | 2005-06-28 | ||||
| 20 | 1Y7F|1|A+ 1Y7F|1|B | 5'-D(*GP*CP*GP*TP*AP*(2NT)P*AP*CP*GP*C)-3') | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-[hydroxy(methyleneamino)oxy]ethyl] Thymidine (T*) | X-ray diffraction | 1.6 | 2005-06-28 | ||||
| 21 | 2IH2|1|B+ 2IH2|1|C | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(5PY)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 5-methylpyrimidin-2(1H)-one at the target base partner position | X-ray diffraction | 1.61 | 2007-11-13 | ||||
| 22 | 2IH2|1|E+ 2IH2|1|F | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(5PY)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 5-methylpyrimidin-2(1H)-one at the target base partner position | X-ray diffraction | 1.61 | 2007-11-13 | ||||
| 23 | 1Y8L|1|A+ 1Y8L|1|B | 5'-D(*GP*CP*GP*TP*AP*(TFE)P*AP*CP*GP*C)-3') | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(trifluoro)ethyl] Thymidine (T*) | X-ray diffraction | 1.5 | 2005-06-28 | ||||
| 24 | 1Y86|1|A+ 1Y86|1|B | 5'-D(*GP*CP*GP*TP*AP*(125)P*AP*CP*GP*C)-3' | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(fluoro)ethyl] Thymidine (T*) | X-ray diffraction | 1.7 | 2005-06-28 | ||||
| 25 | 1Y9S|1|A+ 1Y9S|1|B | 5'-D(*GP*CP*GP*TP*AP*(2GT)P*AP*CP*GP*C)-3') | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-propargyl Thymidine (T*) | X-ray diffraction | 1.55 | 2005-06-28 | ||||
| 26 | 3OZ3|1|A+ 3OZ3|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(UVX)P*AP*CP*GP*C)-3') | Vinyl Carbocyclic LNA | X-ray diffraction | 1.57 | 2010-11-24 | ||||
| 27 | 3PA0|1|A | DNA 5'-D(*AP*TP*CP*TP*GP*TP*GP*GP*TP*C)-3' | synthetic construct | Crystal Structure of Chiral Gamma-PNA with Complementary DNA Strand: Insight Into the Stability and Specificity of Recognition an Conformational Preorganization | X-ray diffraction | 1.6 | 2010-12-29 | |||
| 28 | 3PA0|1|B | DNA 5'-D(*AP*TP*CP*TP*GP*TP*GP*GP*TP*C)-3' | synthetic construct | Crystal Structure of Chiral Gamma-PNA with Complementary DNA Strand: Insight Into the Stability and Specificity of Recognition an Conformational Preorganization | X-ray diffraction | 1.6 | 2010-12-29 | |||
| 29 | 1Y8V|1|A+ 1Y8V|1|B | 5'-D(*GP*CP*GP*TP*AP*(P2T)P*AP*CP*GP*C)-3' | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-propyl Thymidine (T*) | X-ray diffraction | 1.5 | 2005-06-28 | ||||
| 30 | 2FIL|1|A+ 2FIL|1|B | 5'-D(*GP*CP*GP*TP*(A2M)P*(TAF)P*AP*CP*GP*C)-3' | Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-faT-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and 2'-Fluoroarabino-Thymidine (faT) | X-ray diffraction | 1.69 | 2006-05-23 | ||||
| 31 | 2FIL|1|C+ 2FIL|1|D | 5'-D(*GP*CP*GP*TP*(A2M)P*(TAF)P*AP*CP*GP*C)-3' | Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-faT-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and 2'-Fluoroarabino-Thymidine (faT) | X-ray diffraction | 1.69 | 2006-05-23 | ||||
| 32 | 2IBT|1|B+ 2IBT|1|C | 5'-D(*GP*TP*TP*CP*GP*(2PR)P*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(3DR)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position and an abasic site analog at the target base partner position | X-ray diffraction | 1.7 | 2007-05-29 | ||||
| 33 | 2IBT|1|E+ 2IBT|1|F | 5'-D(*GP*TP*TP*CP*GP*(2PR)P*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(3DR)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position and an abasic site analog at the target base partner position | X-ray diffraction | 1.7 | 2007-05-29 | ||||
| 34 | 3JY1|1|B+ 3JY1|1|C | DNA (5'-D(*TP*GP*GP*GP*(3DR)P*GP*GP*CP*TP*T)-3'), DNA (5'-D(*AP*AP*AP*GP*CP*CP*CP*CP*CP*C)-3') | Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from C) | X-ray diffraction | 1.754 | 2010-09-22 | ||||
| 35 | 1I0J|1|A+ 1I0J|1|B | 5'-D(*GP*CP*GP*TP*AP*(T23)P*AP*CP*GP*C)-3' | 1.06 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE (T23) THYMINE IN PLACE OF T6, HIGH CS-SALT | X-ray diffraction | 1.06 | 2001-04-04 | ||||
| 36 | 1YBC|1|A+ 1YBC|1|B | 5'-D(*GP*CP*GP*TP*AP*(BOE)P*AP*CP*GP*C)-3') | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(benzyloxy)ethyl] Thymidine (T*) | X-ray diffraction | 1.8 | 2005-06-28 | ||||
| 37 | 2IH5|1|B+ 2IH5|1|C | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(3DR)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target base partner position | X-ray diffraction | 1.8 | 2007-11-13 | ||||
| 38 | 2OKS|1|A | 5'-D(*CP*CP*AP*AP*(C34)P*GP*TP*TP*GP*G)-3' | X-ray Structure of a DNA Repair Substrate Containing an Alkyl Interstrand Crosslink at 1.65 Resolution | X-ray diffraction | 1.65 | 2007-02-13 | ||||
| 39 | 1NZG|1|A+ 1NZG|1|B | 5'-D(*GP*CP*GP*TP*AP*(3ME)P*AP*CP*GP*C)-3' | Crystal structure of A-DNA decamer GCGTA(3ME)ACGC, with a modified 5-methyluridine | X-ray diffraction | 1.6 | 2003-08-26 | ||||
| 40 | 1NR8|1|A | 5'-D(P*AP*GP*TP*GP*AP*TP*CP*TP*AP*C)-3' | The crystal structure of a D-Lysine-based chiral PNA-DNA duplex | X-ray diffraction | 1.66 | 2003-10-28 | ||||
| 41 | 3OZ4|1|A+ 3OZ4|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(URX)P*AP*CP*GP*C)-3') | R-Methyl Carbocyclic LNA | X-ray diffraction | 1.59 | 2010-11-24 | ||||
| 42 | 1IKK|1|A+ 1IKK|1|B | 5'-D(*CP*CP*TP*TP*TP*AP*AP*AP*GP*G)-3' | Intrinsic Bending and Deformability at the T-A step of CCTTTAAAGG: A Comparative Analysis of T-A and A-T steps within A-tracts | X-ray diffraction | 1.6 | 2001-10-05 | ||||
| 43 | 1ZF1|1|A+ 1ZF1|1|B | 5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3' | CCC A-DNA | X-ray diffraction | 1.35 | 2005-05-10 | ||||
| 44 | 2JG3|1|B+ 2JG3|1|C | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*CP)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*6MAP*AP*CP)-3' | synthetic construct | MtaqI with BAZ | X-ray diffraction | 1.9 | 2007-08-07 | |||
| 45 | 2NP7|1|B+ 2NP7|1|C | 5'-D(*GP*TP*TP*CP*GP*(3DR)P*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(4PC)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target position and pyrrolo-dC at the target base partner position | X-ray diffraction | 1.9 | 2007-11-13 | ||||
| 46 | 2JG3|1|E+ 2JG3|1|F | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*CP)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*6MAP*AP*CP)-3' | synthetic construct | MtaqI with BAZ | X-ray diffraction | 1.9 | 2007-08-07 | |||
| 47 | 2WIW|1|C+ 2WIW|1|D | 5'-D(*DC*DG*DG*DA*DT*DA*DT*DC*DC*DGP)-3' | synthetic construct | Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate | X-ray diffraction | 1.8 | 2009-05-26 | |||
| 48 | 1G38|1|B+ 1G38|1|C | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3' | ADENINE-SPECIFIC METHYLTRANSFERASE M. TAQ I/DNA COMPLEX | X-ray diffraction | 2 | 2001-03-05 | ||||
| 49 | 1G38|1|E+ 1G38|1|F | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3' | ADENINE-SPECIFIC METHYLTRANSFERASE M. TAQ I/DNA COMPLEX | X-ray diffraction | 2 | 2001-03-05 | ||||
| 50 | 1ZF3|1|A+ 1ZF3|1|B | 5'-D(*CP*CP*GP*AP*TP*AP*TP*CP*GP*G)-3' | ATC Four-stranded DNA Holliday Junction | X-ray diffraction | 1.84 | 2005-05-10 | ||||
| 51 | 1ZF9|1|A+ 1ZF9|1|B | 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3' | GGG Duplex A-DNA | X-ray diffraction | 1.38 | 2005-05-10 | ||||
| 52 | 1ZFG|1|A+ 1ZFG|1|B | 5'-D(*CP*CP*GP*AP*GP*CP*TP*CP*GP*G)-3' | CTC Duplex B-DNA | X-ray diffraction | 1.75 | 2005-05-10 | ||||
| 53 | 3HPO|1|C+ 3HPO|1|B | 5'-D(P*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3' | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus Y714S mutant bound to G:T mismatch | X-ray diffraction | 1.75 | 2010-06-23 | ||||
| 54 | 473D|1|A+ 473D|1|B | DNA (5'-D(*CP*GP*TP*AP*TP*AP*TP*AP*CP*G)-3') | NI2+/GUANINE INTERACTIONS AND NETROPSIN/GUANINE STACKING IN D(CGTATATACG)2 | X-ray diffraction | 1.58 | 1999-12-02 | ||||
| 55 | 1ZF7|1|A+ 1ZF7|1|B | 5'-D(*CP*CP*GP*TP*CP*GP*AP*CP*GP*G)-3' | GAC Duplex B-DNA | X-ray diffraction | 1.05 | 2005-05-10 | ||||
| 56 | 2BDP|1|T+ 2BDP|1|P | DNA (5'-D(P*AP*GP*CP*AP*TP*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*GP*C)-3') | CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA | X-ray diffraction | 1.8 | 1999-01-13 | ||||
| 57 | 1ZEX|1|A+ 1ZEX|1|B | 5'-D(*CP*CP*CP*GP*GP*CP*CP*GP*GP*G)-3' | CCG A-DNA | X-ray diffraction | 1.65 | 2005-05-10 | ||||
| 58 | 1ZF8|1|A+ 1ZF8|1|B | 5'-D(*CP*CP*AP*CP*CP*GP*GP*TP*GP*G)-3' | GGT Duplex A-DNA | X-ray diffraction | 1.48 | 2005-05-10 | ||||
| 59 | 2B2B|1|A+ 2B2B|1|B | 5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3' | Structural distortions in psoralen cross-linked DNA | X-ray diffraction | 1.5 | 2006-10-03 | ||||
| 60 | 1NVY|1|A+ 1NVY|1|B | d(TCGGTACCGA)4 | Strontium bound to the Holliday junction sequence d(TCGGTACCGA)4 | X-ray diffraction | 1.5 | 2003-02-25 | ||||
| 61 | 2VOA|1|C+ 2VOA|1|D | 5'-D(*GP*CP*GP*GP*TP*AP*GP*CP*CP*GP)-3', 5'-D(*CP*GP*GP*CP*TP*AP*CP*CP*GP*CP)-3' | synthetic construct | Structure of an AP Endonuclease from Archaeoglobus fulgidus | X-ray diffraction | 1.7 | 2008-12-09 | |||
| 62 | 1P54|1|A+ 1P54|1|B | 5'-D(*CP*CP*AP*GP*TP*AP*CP*(BRU)P*GP*G)-3' | Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions | X-ray diffraction | 1.9 | 2003-09-02 | ||||
| 63 | 2AXB|1|A+ 2AXB|1|B | 5'-D(*GP*CP*GP*TP*AP*(S2M)P*AP*CP*GP*C)-3') | Crystal Structure Analysis Of A 2-O-[2-(methoxy)ethyl]-2-thiothymidine Modified Oligodeoxynucleotide Duplex | X-ray diffraction | 1.61 | 2005-11-01 | ||||
| 64 | 3LDY|1|C+ 3LDY|1|B | DNA (5'-D(P*AP*TP*TP*AP*AP*GP*CP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*GP*CP*TP*TP*A)-3') | An extraordinary mechanism of DNA perturbation exhibited by the rare-cutting HNH restriction endonuclease PacI | X-ray diffraction | 1.97 | 2010-04-21 | ||||
| 65 | 2OYT|1|C+ 2OYT|1|B | DNA strand2, DNA strand1 | Crystal Structure of UNG2/DNA(TM) | X-ray diffraction | 2 | 2007-10-30 | ||||
| 66 | 2ORF|1|A+ 2ORF|1|B | DNA (5'-D(*CP*CP*GP*GP*TP*AP*(BRU)P*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3') | Directing Macromolecular Conformation Through Halogen Bonds | X-ray diffraction | 1.85 | 2007-03-27 | ||||
| 67 | 1ZF0|1|A+ 1ZF0|1|B | 5'-D(*CP*CP*GP*TP*TP*AP*AP*CP*GP*G)-3' | B-DNA | X-ray diffraction | 1.5 | 2005-05-10 | ||||
| 68 | 1P4Y|1|A+ 1P4Y|1|B | 5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3' | Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions | X-ray diffraction | 1.7 | 2003-09-02 | ||||
| 69 | 1ZF5|1|A | 5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3' | GCT duplex B-DNA | X-ray diffraction | 0.99 | 2005-05-10 | ||||
| 70 | 1SA3|1|C+ 1SA3|1|D | 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3' | An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site | X-ray diffraction | 1.95 | 2004-09-07 | ||||
| 71 | 1SA3|1|E+ 1SA3|1|F | 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3' | An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site | X-ray diffraction | 1.95 | 2004-09-07 | ||||
| 72 | 3OD8|1|K | 5'-D(*GP*CP*CP*GP*CP*TP*TP*GP*GP*G)-3', 5'-D(*CP*CP*CP*AP*AP*GP*CP*GP*GP*C)-3' | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-ray diffraction | 2.4 | 2011-01-12 | ||||
| 73 | 3OD8|1|I | 5'-D(*GP*CP*CP*GP*CP*TP*TP*GP*GP*G)-3', 5'-D(*CP*CP*CP*AP*AP*GP*CP*GP*GP*C)-3' | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-ray diffraction | 2.4 | 2011-01-12 | ||||
| 74 | 3OD8|1|M | 5'-D(*GP*CP*CP*GP*CP*TP*TP*GP*GP*G)-3', 5'-D(*CP*CP*CP*AP*AP*GP*CP*GP*GP*C)-3' | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-ray diffraction | 2.4 | 2011-01-12 | ||||
| 75 | 3OD8|1|O+ 3OD8|1|P | 5'-D(*GP*CP*CP*GP*CP*TP*TP*GP*GP*G)-3', 5'-D(*CP*CP*CP*AP*AP*GP*CP*GP*GP*C)-3' | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-ray diffraction | 2.4 | 2011-01-12 | ||||
| 76 | 2B1B|1|A+ 2B1B|1|B | 5'-D(*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3' | 5'-D(*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3' Zif268 binding site | X-ray diffraction | 1.9 | 2005-09-27 | ||||
| 77 | 1WD0|1|B+ 1WD0|1|C | 5'-D(*CP*CP*TP*AP*TP*AP*TP*AP*GP*G)-3' | Crystal structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers | X-ray diffraction | 1.9 | 2004-08-03 | ||||
| 78 | 3BDP|1|P+ 3BDP|1|T | DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*GP*CP*2DT)-3'), DNA (5'-D(*AP*GP*CP*AP*TP*CP*AP*TP*GP*C)-3') | DNA POLYMERASE I/DNA COMPLEX | X-ray diffraction | 1.9 | 1999-01-13 | ||||
| 79 | 1S23|1|A | 5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3' | Crystal Structure Analysis of the B-DNA Decamer CGCAATTGCG | X-ray diffraction | 1.6 | 2004-04-06 | ||||
| 80 | 1NVN|1|A+ 1NVN|1|B | 5'-D(CpCpGpGpTpApCpCpGpG)-3' | Structural Characterisation of the Holliday junction formed by the sequence CCGGTACCGG at 1.8 A | X-ray diffraction | 1.8 | 2003-02-25 | ||||
| 81 | 1I6J|1|C+ 1I6J|1|B | 5'-D(*AP*CP*GP*GP*GP*AP*CP*GP*AP*C)-3', 5'-D(*GP*TP*CP*GP*TP*C)-3' | CRYSTAL STRUCTURE OF A PSEUDO-16-MER DNA WITH STACKED GUANINES AND TWO G-A MISPAIRS COMPLEXED WITH THE N-TERMINAL FRAGMENT OF MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE | X-ray diffraction | 2 | 2001-09-07 | ||||
| 82 | 1ZFB|1|A+ 1ZFB|1|B | 5'-D(*CP*CP*GP*CP*CP*GP*GP*CP*GP*G)-3' | GGC Duplex B-DNA | X-ray diffraction | 1.65 | 2005-05-10 | ||||
| 83 | 1ZF4|1|A+ 1ZF4|1|B | 5'-D(*CP*CP*GP*AP*TP*AP*TP*CP*GP*G)-3' | ATC Four-stranded DNA Holliday Junction | X-ray diffraction | 1.65 | 2005-05-10 | ||||
| 84 | 1L6B|1|A+ 1L6B|1|B | 5'-D(*CP*CP*GP*GP*TP*AP*CP*(5CM)P*GP*G)-3' | CRYSTAL STRUCTURE ANALYSIS OF THE ALL DNA HOLLIDAY JUNCTION STRUCTURE OF CCGGTACM5CGG | X-ray diffraction | 1.5 | 2002-08-07 | ||||
| 85 | 3IGT|1|A+ 3IGT|1|B+ 3IGT|1|C+ 3IGT|1|D | 5'-D(*CP*CP*GP*AP*GP*TP*CP*CP*TP*A)-3', 5'-D(*CP*TP*CP*AP*AP*CP*TP*CP*GP*G)-3', 5'-D(*TP*CP*GP*GP*CP*CP*TP*GP*AP*G)-3', 5'-D(*TP*AP*GP*GP*GP*GP*CP*CP*GP*A)-3' | A rare nucleotide base tautomer in the structure of an asymmetric DNA junction | X-ray diffraction | 1.9 | 2009-08-18 | ||||
| 86 | 2IH4|1|B+ 2IH4|1|C | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(4PC)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing pyrrolo-dC at the target base partner position | X-ray diffraction | 2.1 | 2007-11-13 | ||||
| 87 | 2IH4|1|E+ 2IH4|1|F | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(4PC)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing pyrrolo-dC at the target base partner position | X-ray diffraction | 2.1 | 2007-11-13 | ||||
| 88 | 3IFF|1|A+ 3IFF|1|B | DNA (5'-D(*GP*TP*AP*CP*GP*CP*GP*TP*(XUA)P*C)-3') | 2'-SeMe-A modified DNA decamer | X-ray diffraction | 1.75 | 2009-08-11 | ||||
| 89 | 1WV5|1|A+ 1WV5|1|B | 5'-D(*GP*CP*GP*TP*AP*(2BT)P*AP*CP*GP*C)-3' | X-ray structure of the A-decamer GCGTATACGC with a single 2'-o-butyl thymine in place of T6, Mg-form | X-ray diffraction | 2.3 | 2005-06-28 | ||||
| 90 | 1ZF2|1|A+ 1ZF2|1|B | 5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3' | Four-stranded DNA Holliday Junction (CCC) | X-ray diffraction | 1.95 | 2005-05-10 | ||||
| 91 | 1I0O|1|A+ 1I0O|1|B | 5'-D(*GP*CP*GP*TP*AP*(T23)P*AP*CP*GP*C)-3' | 1.6 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE THYMINE IN PLACE OF T6, HIGH K-SALT | X-ray diffraction | 2 | 2001-04-04 | ||||
| 92 | 1P4Z|1|A | 5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*G)-3' | Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions | X-ray diffraction | 2 | 2003-09-02 | ||||
| 93 | 3Q0D|1|B | DNA (5'-D(*TP*CP*CP*AP*(5CM)P*GP*TP*CP*AP*G)-3') | Crystal structure of SUVH5 SRA- hemi methylated CG DNA complex | X-ray diffraction | 2.3704 | 2011-02-23 | ||||
| 94 | 3Q0D|1|C | DNA (5'-D(*CP*TP*GP*AP*CP*GP*TP*GP*GP*A)-3') | Crystal structure of SUVH5 SRA- hemi methylated CG DNA complex | X-ray diffraction | 2.3704 | 2011-02-23 | ||||
| 95 | 3Q0B|1|A | DNA (5'-D(*AP*CP*TP*AP*(5CM)P*GP*TP*AP*GP*T)-3') | Crystal structure of SUVH5 SRA- fully methylated CG DNA complex in space group P42212 | X-ray diffraction | 2.2 | 2011-02-02 | ||||
| 96 | 1S1L|1|A+ 1S1L|1|B | 5'-D(*CP*CP*(OIP)*GP*TP*AP*CP*(5CM)P*GP*G)-3' | Influence of Groove Interactions on the Formation of DNA Holliday Junctions | X-ray diffraction | 2.2 | 2004-08-31 | ||||
| 97 | 1ZF6|1|A+ 1ZF6|1|B | 5'-D(*CP*CP*CP*CP*AP*TP*GP*GP*GP*G)-3' | TGG DUPLEX A-DNA | X-ray diffraction | 1.5 | 2005-05-10 | ||||
| 98 | 2IBS|1|B+ 2IBS|1|C | 5'-D(*GP*TP*TP*CP*GP*(2PR)P*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position | X-ray diffraction | 2.4 | 2007-05-29 | ||||
| 99 | 2IBS|1|E+ 2IBS|1|F | 5'-D(*GP*TP*TP*CP*GP*(2PR)P*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position | X-ray diffraction | 2.4 | 2007-05-29 | ||||
| 100 | 2ORH|1|A+ 2ORH|1|B | DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(DU)P*CP*GP*G)-3') | Directing Macromolecular Conformation Through Halogen Bonds | X-ray diffraction | 1.9 | 2007-03-27 | ||||
| 101 | 1S1K|1|A | 5'-D(*CP*CP*(1AP)P*GP*TP*AP*CP*TP*GP*G)-3' | INFLUENCE OF GROOVE INTERACTIONS ON DNA HOLLIDAY JUNCTION FORMATION | X-ray diffraction | 1.9 | 2004-08-31 | ||||
| 102 | 1ZFA|1|A+ 1ZFA|1|B | 5'-D(*CP*CP*TP*CP*CP*GP*GP*AP*GP*G)-3' | GGA Duplex A-DNA | X-ray diffraction | 1.56 | 2005-05-10 | ||||
| 103 | 3ODA|1|I+ 3ODA|1|J | 5'-D(*GP*CP*CP*TP*GP*CP*AP*GP*GP*C)-3' | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-ray diffraction | 2.64 | 2011-01-12 | ||||
| 104 | 3ODA|1|K+ 3ODA|1|L | 5'-D(*GP*CP*CP*TP*GP*CP*AP*GP*GP*C)-3' | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-ray diffraction | 2.64 | 2011-01-12 | ||||
| 105 | 3ODA|1|M+ 3ODA|1|N | 5'-D(*GP*CP*CP*TP*GP*CP*AP*GP*GP*C)-3' | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-ray diffraction | 2.64 | 2011-01-12 | ||||
| 106 | 3ODA|1|O+ 3ODA|1|P | 5'-D(*GP*CP*CP*TP*GP*CP*AP*GP*GP*C)-3' | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-ray diffraction | 2.64 | 2011-01-12 | ||||
| 107 | 3HS1|1|A+ 3HS1|1|B | 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3' | Structure of Holliday junction formed by d(CCGGTACCGG); Crystal grown with CoCl2 | X-ray diffraction | 2.51 | 2010-06-16 | ||||
| 108 | 1ZEZ|1|A+ 1ZEZ|1|B | 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3' | ACC Holliday Junction | X-ray diffraction | 2 | 2005-05-10 | ||||
| 109 | 2ORG|1|A+ 2ORG|1|B | DNA (5'-D(*CP*CP*GP*GP*TP*AP*(BRU)P*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3') | Directing Macromolecular Conformation Through Halogen Bonds | X-ray diffraction | 2 | 2007-03-27 | ||||
| 110 | 1ZFC|1|A+ 1ZFC|1|B | 5'-D(*CP*CP*GP*AP*TP*AP*TP*CP*GP*G)-3' | ATC Duplex B-DNA | X-ray diffraction | 2 | 2005-05-10 | ||||
| 111 | 2B1C|1|A+ 2B1C|1|B | 5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3', 5'-D(*GP*GP*TP*CP*CP*CP*AP*CP*GP*C)-3' | 5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3' Zif268 binding site | X-ray diffraction | 2.2 | 2005-09-27 | ||||
| 112 | 1WD1|1|B+ 1WD1|1|C | 5'-D(*CP*CP*TP*AP*CP*GP*TP*AP*GP*G)-3' | Crystal structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers | X-ray diffraction | 2.2 | 2004-08-03 | ||||
| 113 | 3HQE|1|A+ 3HQE|1|B | 5'-D(*CP*GP*GP*GP*CP*GP*CP*CP*CP*G)-3' | Crystal Structure of the decamer CGGGCGCCCG forming a Holliday junction | X-ray diffraction | 2.94 | 2010-06-09 | ||||
| 114 | 2NP6|1|B+ 2NP6|1|C | 5'-D(*GP*TP*TP*CP*GP*(3DR)P*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target position | X-ray diffraction | 2.1 | 2007-11-13 | ||||
| 115 | 2NP6|1|E+ 2NP6|1|F | 5'-D(*GP*TP*TP*CP*GP*(3DR)P*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target position | X-ray diffraction | 2.1 | 2007-11-13 | ||||
| 116 | 3G2D|1|I+ 3G2D|1|H | 5'-D(*CP*CP*TP*GP*UP*GP*CP*GP*AP*T)-3', 5'-D(*CP*GP*CP*G*CP*AP*GP*GP*C)-3' | Complex of Mth0212 and a 4 bp dsDNA with 3'-overhang | X-ray diffraction | 2.3 | 2010-03-09 | ||||
| 117 | 3G2D|1|K+ 3G2D|1|G | 5'-D(*CP*CP*TP*GP*UP*GP*CP*GP*AP*T)-3', 5'-D(*CP*GP*CP*G*CP*AP*GP*GP*C)-3' | Complex of Mth0212 and a 4 bp dsDNA with 3'-overhang | X-ray diffraction | 2.3 | 2010-03-09 | ||||
| 118 | 467D|1|A+ 467D|1|B | DNA (5'-D(*CP*CP*GP*GP*GP*AP*CP*CP*GP*G)-3') | The structure of a decamer forming a four-way junction | X-ray diffraction | 2.16 | 2000-04-22 | ||||
| 119 | 1JUC|1|A+ 1JUC|1|B | 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3' | Crystal Structure Analysis of a Holliday Junction Formed by CCGGTACCGG | X-ray diffraction | 2.35 | 2002-02-22 | ||||
| 120 | 1NT8|1|A+ 1NT8|1|B | 5'-d(CpCpGpGpTpApCpCpGpG)-3' | Structural Characterisation of the Holliday junction formed by the sequence CCGGTACCGG at 2.00 A | X-ray diffraction | 2 | 2003-02-11 | ||||
| 121 | 1WV6|1|A+ 1WV6|1|B | 5'-D(*GP*CP*GP*TP*AP*(2BT)P*AP*CP*GP*C)-3' | X-ray structure of the A-decamer GCGTATACGC with a single 2'-O-butyl thymine in place of T6, Sr-form | X-ray diffraction | 2.55 | 2005-06-28 | ||||
| 122 | 1L4J|1|A+ 1L4J|1|B+ 1L4J|1|C+ 1L4J|1|D | 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3' | Holliday Junction TCGGTACCGA with Na and Ca Binding Sites. | X-ray diffraction | 1.85 | 2003-03-04 | ||||
| 123 | 1ZEW|1|A+ 1ZEW|1|B | 5'-D(*CP*CP*TP*CP*TP*AP*GP*AP*GP*G)-3' | B-DNA | X-ray diffraction | 2.25 | 2005-05-10 | ||||
| 124 | 1M6G|1|A+ 1M6G|1|B | 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3' | Structural Characterisation of the Holliday Junction TCGGTACCGA | X-ray diffraction | 1.652 | 2003-05-06 | ||||
| 125 | 1ZEY|1|A+ 1ZEY|1|B | 5'-D(*CP*CP*CP*CP*GP*CP*GP*GP*GP*G)-3' | CGG A-DNA | X-ray diffraction | 1.7 | 2005-05-10 | ||||
| 126 | 1H9D|1|E+ 1H9D|1|F | DNA (5'-(*GP*TP*TP*GP*CP*GP*GP*TP*TP*G)-3'), DNA (5'-(*CP*AP*AP*CP*CP*GP*CP*AP*AP*C)-3') | Aml1/cbf-beta/dna complex | X-ray diffraction | 2.6 | 2001-03-31 | ||||
| 127 | 1H9D|1|G+ 1H9D|1|H | DNA (5'-(*GP*TP*TP*GP*CP*GP*GP*TP*TP*G)-3'), DNA (5'-(*CP*AP*AP*CP*CP*GP*CP*AP*AP*C)-3') | Aml1/cbf-beta/dna complex | X-ray diffraction | 2.6 | 2001-03-31 | ||||
| 128 | 3GNK|1|A+ 3GNK|1|B+ 3GNK|1|C+ 3GNK|1|D | 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3' | Calcium bound to the Holliday junction sequence d(TCGGCGCCGA)4 | X-ray diffraction | 2.1 | 2009-03-31 | ||||
| 129 | 1D1U|1|C+ 1D1U|1|B | DNA (5'-D(*AP*CP*GP*GP*CP*AP*CP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*GP*TP*G)-3') | USE OF AN N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE TO FACILITATE CRYSTALLIZATION AND ANALYSIS OF A PSEUDO-16-MER DNA MOLECULE CONTAINING G-A MISPAIRS | X-ray diffraction | 2.3 | 2000-04-02 | ||||
| 130 | 1J3E|1|B+ 1J3E|1|C | 5'-D(*AP*AP*GP*GP*(6MA)P*TP*CP*CP*AP*A)-3', 5'-D(*TP*TP*GP*GP*AP*GP*CP*CP*TP*T)-3' | Crystal Structure of the E.coli SeqA protein complexed with N6-methyladenine- guanine mismatch DNA | X-ray diffraction | 2.5 | 2004-05-18 | ||||
| 131 | 2WBU|1|B+ 2WBU|1|C | 5'-D(*DGP*DAP*DGP*DGP*DCP*DGP*DTP* DGP*DGP*DC)-3', 5'-D(*DGP*DCP*DCP*DAP*DCP*DGP*DCP* DCP*DTP*DC)-3' | CRYSTAL STRUCTURE OF THE ZINC FINGER DOMAIN OF KLF4 BOUND TO ITS TARGET DNA | X-ray diffraction | 2.5 | 2010-04-07 | ||||
| 132 | 1YFI|1|C+ 1YFI|1|D | 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3' | Crystal Structure of restriction endonuclease MspI in complex with its cognate DNA in P212121 space group | X-ray diffraction | 2.7 | 2006-01-10 | ||||
| 133 | 1YFI|1|E+ 1YFI|1|F | 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3' | Crystal Structure of restriction endonuclease MspI in complex with its cognate DNA in P212121 space group | X-ray diffraction | 2.7 | 2006-01-10 | ||||
| 134 | 3PBX|1|A+ 3PBX|1|B | DNA | Strontium bound to the sequence d(CCGGCGCCGG) | X-ray diffraction | 1.879 | 2011-02-02 | ||||
| 135 | 1WVL|1|C+ 1WVL|1|D | 5'-D(*CP*CP*TP*AP*TP*AP*TP*AP*GP*G)-3' | Crystal Structure of Multimeric DNA-binding Protein Sac7d-GCN4 with DNA decamer | X-ray diffraction | 2.6 | 2005-08-02 | ||||
| 136 | 3R86|1|B | DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3') | Crystal structure of d(CCGGTACCGG)2 as B-DNA duplex grown with 5 mM CoCl2 | X-ray diffraction | 2.8 | 2011-04-06 | ||||
| 137 | 3R86|1|A | DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3') | Crystal structure of d(CCGGTACCGG)2 as B-DNA duplex grown with 5 mM CoCl2 | X-ray diffraction | 2.8 | 2011-04-06 | ||||
| 138 | 1NQS|1|A+ 1NQS|1|B | 5'-d(TpCpGpGpTpApCpCpGpA)-3' | Structural Characterisation of the Holliday Junction formed by the sequence d(TCGGTACCGA) at 1.97 A | X-ray diffraction | 1.97 | 2003-02-04 | ||||
| 139 | 4SKN|1|A+ 4SKN|1|B | DNA (5'-D(*TP*GP*GP*GP*(D1P)P*GP*GP*CP*TP*T)-3'), DNA (5'-D(*AP*AP*AP*GP*CP*CP*GP*CP*CP*C)-3') | A NUCLEOTIDE-FLIPPING MECHANISM FROM THE STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO DNA | X-ray diffraction | 2.9 | 1999-02-26 | ||||
| 140 | 2R8K|1|T+ 2R8K|1|P | 5'-D(P*DGP*DGP*DCP*DTP*DCP*DAP*DCP*DCP*DAP*DC)-3', 5'-D(*DGP*DTP*DGP*DGP*DTP*DGP*DAP*DGP*DC)-3' | Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA | X-ray diffraction | 3.3 | 2007-12-11 | ||||
| 141 | 2R8K|1|U+ 2R8K|1|Q | 5'-D(P*DGP*DGP*DCP*DTP*DCP*DAP*DCP*DCP*DAP*DC)-3', 5'-D(*DGP*DTP*DGP*DGP*DTP*DGP*DAP*DGP*DC)-3' | Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA | X-ray diffraction | 3.3 | 2007-12-11 | ||||
| 142 | 1XPX|1|C+ 1XPX|1|D | 5'-D(*CP*AP*GP*GP*CP*AP*TP*GP*CP*T)-3', 5'-D(*AP*GP*CP*AP*TP*GP*CP*CP*TP*G)-3' | Structural basis of prospero-DNA interaction; implications for transcription regulation in developing cells | X-ray diffraction | 2.8 | 2005-05-03 | ||||
| 143 | 3GOO|1|A+ 3GOO|1|B | 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3' | Strontium bound to the Holliday junction sequence d(TCGGCGCCGA)4 | X-ray diffraction | 2.5 | 2009-04-07 | ||||
| 144 | 3IXN|1|A+ 3IXN|1|B | DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3') | Crystal structure of d(CCGGTACCGG) as B-DNA duplex | X-ray diffraction | 2.87 | 2010-09-15 | ||||
| 145 | 3EY0|1|A+ 3EY0|1|B | 5'-D(*DAP*DTP*DAP*DTP*DAP*DTP*DAP*DTP*DAP*DT)-3' | A new form of DNA-drug interaction in the minor groove of a coiled coil | X-ray diffraction | 2.52 | 2009-10-27 | ||||
| 146 | 1IU3|1|B+ 1IU3|1|A | 5'-D(*TP*TP*GP*GP*AP*TP*CP*CP*TP*T)-3', 5'-D(*AP*AP*GP*GP*AP*TP*CP*CP*AP*A)-3' | CRYSTAL STRUCTURE OF THE E.COLI SEQA PROTEIN COMPLEXED WITH HEMIMETHYLATED DNA | X-ray diffraction | 3 | 2003-06-17 | ||||
| 147 | 1IU3|1|D+ 1IU3|1|E | 5'-D(*AP*AP*GP*GP*AP*TP*CP*CP*AP*A)-3', 5'-D(*TP*TP*GP*GP*AP*TP*CP*CP*TP*T)-3' | CRYSTAL STRUCTURE OF THE E.COLI SEQA PROTEIN COMPLEXED WITH HEMIMETHYLATED DNA | X-ray diffraction | 3 | 2003-06-17 | ||||
| 148 | 1Z8V|1|A+ 1Z8V|1|B | (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3') | The Structure of d(GGCCAATTGG) Complexed with Netropsin | X-ray diffraction | 1.75 | 2006-03-14 | ||||
| 149 | 3QYM|1|I | 5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*T)-3' | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-ray diffraction | 3.2 | 2011-04-06 | ||||
| 150 | 3QYM|1|J | 5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*T)-3' | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-ray diffraction | 3.2 | 2011-04-06 | ||||
| 151 | 3QYM|1|K | 5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*T)-3' | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-ray diffraction | 3.2 | 2011-04-06 | ||||
| 152 | 3QYM|1|L | 5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*T)-3' | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-ray diffraction | 3.2 | 2011-04-06 | ||||
| 153 | 3QYM|1|M | 5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*T)-3' | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-ray diffraction | 3.2 | 2011-04-06 | ||||
| 154 | 3QYM|1|N | 5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*T)-3' | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-ray diffraction | 3.2 | 2011-04-06 | ||||
| 155 | 3QYM|1|O | 5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*T)-3' | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-ray diffraction | 3.2 | 2011-04-06 | ||||
| 156 | 3QYM|1|P | 5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*T)-3' | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-ray diffraction | 3.2 | 2011-04-06 | ||||
| 157 | 1ZFE|1|A+ 1ZFE|1|B | 5'-D(*CP*CP*TP*GP*CP*GP*CP*AP*GP*G)-3' | GCA Duplex B-DNA | X-ray diffraction | 2.5 | 2005-05-10 | ||||
| 158 | 3GOM|1|A+ 3GOM|1|B | 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3' | Barium bound to the Holliday junction sequence d(TCGGCGCCGA)4 | X-ray diffraction | 2.3 | 2009-04-07 | ||||
| 159 | 2OXM|1|C+ 2OXM|1|B | DNA (5'-D(*AP*AP*AP*GP*AP*TP*(4MF)P*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*TP*AP*TP*CP*TP*T)-3') | Crystal structure of a UNG2/modified DNA complex that represent a stabilized short-lived extrahelical state in ezymatic DNA base flipping | X-ray diffraction | 2.5 | 2007-10-30 | ||||
| 160 | 1ZFM|1|A+ 1ZFM|1|B | 5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3' | AGC Duplex B-DNA | X-ray diffraction | 2.2 | 2005-05-10 | ||||
| 161 | 3GOJ|1|A+ 3GOJ|1|B | 5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3' | Barium bound to the Holliday sequence d(CCGGCGCCGG)4 | X-ray diffraction | 2.6 | 2009-04-07 | ||||
| 162 | 3G38|1|G+ 3G38|1|K | 5'-D(*CP*CP*TP*GP*UP*GP*CP*GP*AP*T)-3', 5'-D(*CP*GP*CP*GP*CP*AP*GP*GP*C)-3' | The catalytically inactive mutant Mth0212 (D151N) in complex with an 8 bp dsDNA | X-ray diffraction | 3.04 | 2010-03-09 | ||||
| 163 | 1ZFH|1|A+ 1ZFH|1|B | 5'-D(*CP*CP*TP*AP*AP*TP*TP*AP*GP*G)-3' | TTA Duplex B-DNA | X-ray diffraction | 2.51 | 2005-05-10 | ||||
| 164 | 1ZFF|1|A | 5'-D(*CP*CP*GP*AP*AP*TP*TP*CP*GP*G)-3' | TTC Duplex B-DNA | X-ray diffraction | 0.94 | 2005-05-10 | ||||
| 165 | 1SK5|1|A+ 1SK5|1|B | 5'-D(*CP*TP*TP*TP*TP*AP*AP*AP*AP*G)-3' | The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition | X-ray diffraction | 0.89 | 2005-06-21 | ||||
| 166 | 3GGI|1|A | 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3' | Locating monovalent cations in one turn of G/C rich B-DNA | X-ray diffraction | 0.98 | 2010-03-09 | ||||
| 167 | 440D|1|A+ 440D|1|B | DNA (5'-D(*AP*GP*GP*GP*GP*CP*CP*CP*CP*T)-3') | HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) | X-ray diffraction | 1.1 | 1999-01-15 | ||||
| 168 | 431D|1|A+ 431D|1|B | DNA (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3') | 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3' | X-ray diffraction | 1.15 | 1999-09-15 | ||||
| 169 | 1D8X|1|A+ 1D8X|1|B | 5'-D(*CP*CP*GP*AP*AP*TP*GP*AP*GP*G)-3' | CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G A BASE PAIRS | X-ray diffraction | 1.2 | 1999-11-05 | ||||
| 170 | 1XUW|1|A+ 1XUW|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(NMT)P*AP*CP*GP*C)-3') | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-ray diffraction | 1.25 | 2004-12-14 | ||||
| 171 | 1XUX|1|A+ 1XUX|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(NMS)P*AP*CP*GP*C)-3') | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-ray diffraction | 1.3 | 2004-12-14 | ||||
| 172 | 1MA8|1|A+ 1MA8|1|B | 5'-D(*GP*CP*GP*TP*AP*UMSP*AP*CP*GP*C)-3' | A-DNA decamer GCGTA(UMS)ACGC with incorporated 2'-methylseleno-uridine | X-ray diffraction | 1.3 | 2002-12-11 | ||||
| 173 | 1D61|1|A | DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3') | THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: MONOCLINIC FORM | X-ray diffraction | 1.3 | 1993-04-15 | ||||
| 174 | 232D|1|A | DNA (5'-D(*AP*GP*GP*CP*AP*TP*GP*CP*CP*T)-3') | THE HIGH RESOLUTION CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGGCATGCCT) | X-ray diffraction | 1.3 | 1996-03-22 | ||||
| 175 | 3DNB|1|A | DNA (5'-D(*CP*CP*AP*AP*GP*AP*TP*TP*GP*G)-3') | HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER | X-ray diffraction | 1.3 | 1989-01-09 | ||||
| 176 | 1XUX|1|C+ 1XUX|1|D | DNA (5'-D(*GP*CP*GP*TP*AP*(NMS)P*AP*CP*GP*C)-3') | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-ray diffraction | 1.3 | 2004-12-14 | ||||
| 177 | 5DNB|1|A | DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3') | STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-G-T-T-G-G AND COMPARISON WITH ISOMORPHOUS DECAMERS C-C-A-A-G-A-T-T-G-G AND C-C-A-G-G-C-C-T-G-G | X-ray diffraction | 1.4 | 1991-10-15 | ||||
| 178 | 441D|1|A | DNA (5'-D(*AP*GP*GP*GP*GP*CP*CP*CP*CP*T)-3') | synthetic construct | HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) | X-ray diffraction | 1.5 | 1999-01-15 | |||
| 179 | 1D49|1|A+ 1D49|1|B | DNA (5'-D(*CP*GP*AP*TP*TP*AP*AP*TP*CP*G)-3') | THE STRUCTURE OF A B-DNA DECAMER WITH A CENTRAL T-A STEP: C-G-A-T-T-A-A-T-C-G | X-ray diffraction | 1.5 | 1992-04-15 | ||||
| 180 | 1D23|1|A+ 1D23|1|B | DNA (5'-D(*CP*GP*AP*TP*CP*GP*AP*TP*CP*G)-3') | THE STRUCTURE OF B-HELICAL C-G-A-T-C-G-A-T-C-G AND COMPARISON WITH C-C-A-A-C-G-T-T-G-G. THE EFFECT OF BASE PAIR REVERSALS | X-ray diffraction | 1.5 | 1991-10-15 | ||||
| 181 | 1D9R|1|A+ 1D9R|1|B | 5'-D(*CP*CP*GP*AP*AP*(BRU)P*GP*AP*GP*G)-3' | CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS | X-ray diffraction | 1.5 | 1999-11-05 | ||||
| 182 | 1CW9|1|A+ 1CW9|1|B | 5'-D(*CP*CP*AP*GP*(G47)P*CP*CP*TP*GP*G)-3' | DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE | X-ray diffraction | 1.55 | 1999-10-14 | ||||
| 183 | 1CW9|1|C+ 1CW9|1|D | 5'-D(*CP*CP*AP*GP*(G47)P*CP*CP*TP*GP*G)-3' | DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE | X-ray diffraction | 1.55 | 1999-10-14 | ||||
| 184 | 183D|1|A | DNA (5'-D(*CP*CP*AP*(8OG)P*CP*GP*CP*TP*GP*G)-3') | X-RAY STRUCTURE OF A DNA DECAMER CONTAINING 7, 8-DIHYDRO-8-OXOGUANINE | X-ray diffraction | 1.6 | 1995-02-27 | ||||
| 185 | 213D|1|A+ 213D|1|B | DNA (5'-D(*CP*CP*IP*GP*GP*CP*CP*(5CM)P*GP*G)-3') | CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCIGGCCM5CGG) AT 1.6 ANGSTROMS SHOWING THE UNEXPECTED WOBBLE I.M5C BASE PAIR | X-ray diffraction | 1.6 | 1996-01-31 | ||||
| 186 | 1DNZ|1|A | DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') | A-DNA DECAMER ACCGGCCGGT WITH MAGNESIUM BINDING SITES | X-ray diffraction | 1.6 | 2000-04-10 | ||||
| 187 | 410D|1|A+ 410D|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(T38)P*AP*CP*GP*C)-3') | DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-ETHOXYMETHYLENE RIBONUCLEOSIDE | X-ray diffraction | 1.6 | 1998-07-17 | ||||
| 188 | 1BD1|1|A | DNA (5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G)-3') | CRYSTALLOGRAPHIC STUDY OF ONE TURN OF G/C-RICH B-DNA | X-ray diffraction | 1.6 | 1990-01-15 | ||||
| 189 | 1DCR|1|A+ 1DCR|1|B | 5'-D(*CP*CP*GP*AP*AP*(BRU)P*GP*AP*GP*G)-3' | CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS | X-ray diffraction | 1.6 | 1999-11-19 | ||||
| 190 | 160D|1|A+ 160D|1|B | DNA (5'-D(*CP*CP*CP*GP*GP*CP*CP*GP*GP*G)-3') | HIGH RESOLUTION CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCCGGCCGGG): NOVEL INTERMOLECULAR BASE-PAIRED G*(G.C) TRIPLETS | X-ray diffraction | 1.65 | 1994-05-18 | ||||
| 191 | 1D56|1|A+ 1D56|1|B | DNA (5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*CP*G)-3') | ALTERNATIVE STRUCTURES FOR ALTERNATING POLY(DA-DT) TRACTS: THE STRUCTURE OF THE B-DNA DECAMER C-G-A-T-A-T-A-T-C-G | X-ray diffraction | 1.7 | 1992-09-15 | ||||
| 192 | 123D|1|A+ 123D|1|B | DNA (5'-D(*CP*CP*AP*GP*GP*CP*(5CM)P*TP*GP*G)-3') | DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR | X-ray diffraction | 1.7 | 1993-10-15 | ||||
| 193 | 137D|1|A+ 137D|1|B | DNA (5'-D(*GP*CP*GP*GP*GP*CP*CP*CP*GP*C)-3') | A-DNA DECAMER D(GCGGGCCCGC)-ORTHORHOMBIC CRYSTAL FORM | X-ray diffraction | 1.7 | 1994-01-15 | ||||
| 194 | 383D|1|A+ 383D|1|B | DNA (5'-D(*CP*(5CM)P*GP*CP*(5CM)P*GP*GP*(5CM)P*GP*G)-3') | Hydration and recognition of methylated CPG steps in DNA | X-ray diffraction | 1.7 | 1998-04-08 | ||||
| 195 | 348D|1|A | DNA (5'-D(*GP*AP*CP*CP*GP*CP*GP*GP*TP*C)-3') | X-RAY CRYSTAL STRUCTURES OF THE DECAMER DGACCGCGGTC: LOW SALT CONCENTRATION | X-ray diffraction | 1.7 | 1997-10-09 | ||||
| 196 | 196D|1|A+ 196D|1|B | DNA (5'-D(*CP*TP*CP*TP*CP*GP*AP*GP*AP*G)-3') | CRYSTAL STRUCTURE OF C-T-C-T-C-G-A-G-A-G: IMPLICATIONS FOR THE STRUCTURE OF THE HOLLIDAY JUNCTION | X-ray diffraction | 1.7 | 1995-02-27 | ||||
| 197 | 122D|1|A+ 122D|1|B | DNA (5'-D(*CP*CP*AP*GP*GP*CP*(5CM)P*TP*GP*G)-3') | DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR | X-ray diffraction | 1.7 | 1993-10-15 | ||||
| 198 | 1D02|1|C+ 1D02|1|D | DNA (5'-D(*GP*CP*CP*AP*AP*TP*TP*GP*GP*C)-3') | CRYSTAL STRUCTURE OF MUNI RESTRICTION ENDONUCLEASE IN COMPLEX WITH COGNATE DNA | X-ray diffraction | 1.7 | 2000-03-08 | ||||
| 199 | 3KDE|1|A+ 3KDE|1|B | 5'-D(*GP*TP*TP*AP*AP*GP*(BRU)P*GP*GP*A)-3', 5'-D(*(BRU)P*CP*CP*AP*CP*TP*TP*AP*AP*C)-3' | Crystal structure of the THAP domain from D. melanogaster P-element transposase in complex with its natural DNA binding site | X-ray diffraction | 1.74 | 2009-12-08 | ||||
| 200 | 2D25|1|A+ 2D25|1|B | DNA (5'-D(*CP*CP*AP*GP*GP*CP*(5CM)P*TP*GP*G)-3') | C-C-A-G-G-C-M5C-T-G-G; HELICAL FINE STRUCTURE, HYDRATION, AND COMPARISON WITH C-C-A-G-G-C-C-T-G-G | X-ray diffraction | 1.75 | 1991-04-23 | ||||
| 201 | 2GWA|1|A+ 2GWA|1|B | 5'-D(*Tp*Cp*Gp*Gp*Tp*Ap*Cp*Cp*Gp*A)-3' | Crystal Structure of a Complex Formed Between the DNA Holliday Junction and a Bis-Acridine Molecule. | X-ray diffraction | 1.75 | 2006-06-06 | ||||
| 202 | 3JXZ|1|B+ 3JXZ|1|C | DNA (5'-D(*TP*GP*GP*GP*(3DR)P*GP*GP*CP*TP*T)-3'), DNA (5'-D(*AP*AP*AP*GP*CP*CP*TP*CP*CP*C)-3') | Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T) | X-ray diffraction | 1.75 | 2010-09-22 | ||||
| 203 | 138D|1|A | DNA (5'-D(*GP*CP*GP*GP*GP*CP*CP*CP*GP*C)-3') | A-DNA DECAMER D(GCGGGCCCGC)-HEXAGONAL CRYSTAL FORM | X-ray diffraction | 1.8 | 1994-01-15 | ||||
| 204 | 396D|1|A | DNA (5'-D(*GP*GP*CP*CP*GP*CP*GP*GP*CP*C)-3') | synthetic construct | CRYSTAL STRUCTURES OF TWO ISOMOPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC) | X-ray diffraction | 1.8 | 1998-05-01 | |||
| 205 | 334D|1|A+ 334D|1|B | DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3') | DEFINING GC-SPECIFICITY IN THE MINOR GROOVE: SIDE-BY-SIDE BINDING OF THE DI-IMIDAZOLE LEXITROPSIN TO C-A-T-G-G-C-C-A-T-G | X-ray diffraction | 1.8 | 1997-08-29 | ||||
| 206 | 1EMH|1|C+ 1EMH|1|B | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*(P2U)P*AP*TP*CP*TP*T)-3') | CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA | X-ray diffraction | 1.8 | 2000-05-16 | ||||
| 207 | 307D|1|A+ 307D|1|B | DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3') | Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis | X-ray diffraction | 1.85 | 1997-01-27 | ||||
| 208 | 1JTL|1|A+ 1JTL|1|B | 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3' | The crystal structure of d(GGCCAATTGG) Complexed with Distamycin | X-ray diffraction | 1.85 | 2002-08-09 | ||||
| 209 | 307D|1|C+ 307D|1|D | DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3') | Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis | X-ray diffraction | 1.85 | 1997-01-27 | ||||
| 210 | 307D|1|E+ 307D|1|F | DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3') | Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis | X-ray diffraction | 1.85 | 1997-01-27 | ||||
| 211 | 432D|1|A+ 432D|1|B | DNA (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3') | D(GGCCAATTGG) COMPLEXED WITH DAPI | X-ray diffraction | 1.89 | 1999-12-18 | ||||
| 212 | 212D|1|A | DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') | INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA | X-ray diffraction | 1.9 | 1996-01-31 | ||||
| 213 | 349D|1|A | DNA (5'-D(*GP*AP*CP*CP*GP*CP*GP*GP*TP*C)-3') | X-RAY CRYSTAL STRUCTURES OF THE DECAMER DGACCGCGGTC: HIGH SALT CONCENTRATION | X-ray diffraction | 1.9 | 1997-10-09 | ||||
| 214 | 414D|1|A+ 414D|1|B | DNA (5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3') | 5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3' | X-ray diffraction | 1.9 | 1999-06-14 | ||||
| 215 | 221D|1|A+ 221D|1|B | DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') | INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA | X-ray diffraction | 1.9 | 1996-01-31 | ||||
| 216 | 395D|1|A | DNA (5'-D(*GP*TP*AP*CP*GP*CP*GP*TP*AP*C)-3') | CRYSTAL STRUCTURES OF TWO ISOMORPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC) | X-ray diffraction | 1.9 | 1998-05-01 | ||||
| 217 | 158D|1|A+ 158D|1|B | DNA (5'-D(*CP*CP*AP*AP*GP*CP*TP*TP*GP*G)-3') | CRYSTALLOGRAPHIC ANALYSIS OF C-C-A-A-G-C-T-T-G-G AND ITS IMPLICATIONS FOR BENDING IN B-DNA | X-ray diffraction | 1.9 | 1994-05-31 | ||||
| 218 | 260D|1|A | DNA (5'-D(*GP*CP*AP*CP*GP*CP*GP*TP*GP*C)-3') | CRYSTAL STRUCTURE OF THE SELF-COMPLEMENTARY 5'-PURINE START DECAMER D(GCACGCGTGC) IN THE A-DNA CONFORMATION-PART II | X-ray diffraction | 1.9 | 1996-06-27 | ||||
| 219 | 414D|1|C+ 414D|1|D | DNA (5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3') | 5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3' | X-ray diffraction | 1.9 | 1999-06-14 | ||||
| 220 | 1Q3F|1|C+ 1Q3F|1|B | 5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3', 5'-D(*TP*GP*TP*(NRI)P*AP*TP*CP*TP*T)-3' | Uracil DNA glycosylase bound to a cationic 1-aza-2'-deoxyribose-containing DNA | X-ray diffraction | 1.9 | 2004-03-23 | ||||
| 221 | 411D|1|A+ 411D|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(T39)P*AP*CP*GP*C)-3') | DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-METHOXYETHYL RIBONUCLEOSIDE | X-ray diffraction | 1.93 | 1998-07-17 | ||||
| 222 | 1BC8|1|A+ 1BC8|1|B | DNA (5'-D(*TP*AP*CP*CP*GP*GP*AP*AP*GP*T)-3'), DNA (5'-D(*AP*AP*CP*TP*TP*CP*CP*GP*GP*T)-3') | STRUCTURES OF SAP-1 BOUND TO DNA SEQUENCES FROM THE E74 AND C-FOS PROMOTERS PROVIDE INSIGHTS INTO HOW ETS PROTEINS DISCRIMINATE BETWEEN RELATED DNA TARGETS | X-ray diffraction | 1.93 | 1998-12-01 | ||||
| 223 | 327D|1|A | DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*CP*GP*CP*GP*C)-3') | CRYSTAL STRUCTURES OF D(GM5CGM5CGCGCGC) | X-ray diffraction | 1.94 | 1997-05-22 | ||||
| 224 | 1D57|1|A+ 1D57|1|B | DNA (5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*CP*G)-3') | ALTERNATIVE STRUCTURES FOR ALTERNATING POLY(DA-DT) TRACTS: THE STRUCTURE OF THE B-DNA DECAMER C-G-A-T-A-T-A-T-C-G | X-ray diffraction | 2 | 1992-09-15 | ||||
| 225 | 318D|1|A+ 318D|1|B | DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(CBR)P*GP*G)-3') | CRYSTAL STRUCTURES OF D(CCGGGCC(BR)5CGG)-HEXAGONAL FORM | X-ray diffraction | 2 | 1997-05-22 | ||||
| 226 | 238D|1|A | DNA (5'-D(*AP*GP*GP*(CBR)P*AP*TP*GP*CP*CP*T)-3') | CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGG(BR)CATGCCT): COMPARISON WITH D(AGGCATGCCT) AND IMPLICATIONS FOR COBALT HEXAMMINE BINDING TO DNA | X-ray diffraction | 2 | 1996-01-30 | ||||
| 227 | 1WQY|1|A+ 1WQY|1|B | 5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3' | X-RAY structural analysis of B-DNA decamer D(CCATTAATGG)2 crystal grown in D2O solution | X-ray diffraction | 2 | 2005-06-21 | ||||
| 228 | 220D|1|A | DNA (5'-D(*AP*CP*CP*CP*GP*CP*GP*GP*GP*T)-3') | INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA | X-ray diffraction | 2 | 1996-01-31 | ||||
| 229 | 1D13|1|A | DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') | MOLECULAR STRUCTURE OF AN A-DNA DECAMER D(ACCGGCCGGT) | X-ray diffraction | 2 | 1990-10-15 | ||||
| 230 | 126D|1|A+ 126D|1|B | DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3') | CRYSTAL STRUCTURE OF CATGGCCATG AND ITS IMPLICATIONS FOR A-TRACT BENDING MODELS | X-ray diffraction | 2 | 1993-10-15 | ||||
| 231 | 1SM5|1|A+ 1SM5|1|B | 5'-D(*GP*CP*(BRU)P*TP*AP*AP*TP*(BRU)P*CP*G)-3', 5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3' | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-ray diffraction | 2 | 2004-05-25 | ||||
| 232 | 365D|1|A+ 365D|1|B | DNA (5'-D(*CP*CP*AP*GP*GP*(CBR)P*CP*TP*GP*G)-3') | STRUCTURAL BASIS FOR G C RECOGNITION IN THE DNA MINOR GROOVE | X-ray diffraction | 2 | 1998-02-05 | ||||
| 233 | 1DA3|1|A+ 1DA3|1|B | DNA (5'-D(*CP*GP*AP*TP*CP*GP*(6MA)P*TP*CP*G)-3') | THE CRYSTAL STRUCTURE OF THE TRIGONAL DECAMER C-G-A-T-C-G-6MEA-T-C-G: A B-DNA HELIX WITH 10.6 BASE-PAIRS PER TURN | X-ray diffraction | 2 | 1993-04-15 | ||||
| 234 | 240D|1|A+ 240D|1|B | DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3') | EFFECT OF END BASE STEPS ON DNA FORM: CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCGGGCCCGG) | X-ray diffraction | 2 | 1996-06-20 | ||||
| 235 | 272D|1|A+ 272D|1|B | DNA (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3') | PARALLEL AND ANTIPARALLEL (G.GC)2 TRIPLE HELIX FRAGMENTS IN A CRYSTAL STRUCTURE | X-ray diffraction | 2 | 1996-09-20 | ||||
| 236 | 1D62|1|A | 5'-D(*CP*CP*AP*AP*IP*AP*TP*TP*GP*G)-3' | THE STRUCTURE OF A /B-DNA$ DECAMER WITH AN I(SLASH)*A MISMATCH AND COMPARISON WITH THE G(SLASH)*A MISMATCH | X-ray diffraction | 2 | 1993-07-15 | ||||
| 237 | 1SM5|1|C+ 1SM5|1|D | 5'-D(*GP*CP*(BRU)P*TP*AP*AP*TP*(BRU)P*CP*G)-3', 5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3' | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-ray diffraction | 2 | 2004-05-25 | ||||
| 238 | 1JGG|1|C+ 1JGG|1|D | 5'-D(P*TP*AP*AP*TP*TP*GP*AP*AP*TP*T)-3', 5'-D(P*AP*AP*TP*TP*CP*AP*AP*TP*TP*A)-3' | Even-skipped Homeodomain Complexed to AT-rich DNA | X-ray diffraction | 2 | 2001-07-06 | ||||
| 239 | 1EMJ|1|C+ 1EMJ|1|B | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*(ASU)P*AP*TP*CP*TP*T)-3') | URACIL-DNA GLYCOSYLASE BOUND TO DNA CONTAINING A 4'-THIO-2'DEOXYURIDINE ANALOG PRODUCT | X-ray diffraction | 2 | 2000-05-16 | ||||
| 240 | 1DCW|1|A+ 1DCW|1|B+ 1DCW|1|C+ 1DCW|1|D | DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3') | STRUCTURE OF A FOUR-WAY JUNCTION IN AN INVERTED REPEAT SEQUENCE. | X-ray diffraction | 2.1 | 2000-04-17 | ||||
| 241 | 408D|1|A+ 408D|1|B | DNA (5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*G)-3') | STRUCTURAL BASIS FOR RECOGNITION OF A-T AND T-A BASE PAIRS IN THE MINOR GROOVE OF B-DNA | X-ray diffraction | 2.1 | 1998-10-19 | ||||
| 242 | 320D|1|A+ 320D|1|B | DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3') | CRYSTAL STRUCTURES OF D(CCGGGCCCGG)-ORTHOGONAL FORM | X-ray diffraction | 2.15 | 1997-05-22 | ||||
| 243 | 321D|1|A+ 321D|1|B | DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3') | CRYSTAL STRUCTURES OF D(CCGGGCCCGG)-ORTHOGONAL FORM | X-ray diffraction | 2.15 | 1997-05-22 | ||||
| 244 | 326D|1|A+ 326D|1|B | DNA (5'-D(*CP*(5CM)P*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3') | CRYSTAL STRUCTURES OF D(CM5CGGGCCM5CGG)-ORTHOGONAL FORM | X-ray diffraction | 2.15 | 1997-05-22 | ||||
| 245 | 384D|1|A+ 384D|1|B | 5'-D(*CP*(5CM)P*GP*CP*(5CM)P*GP*GP*(5CM)P*GP*G)-3' | HYDRATION AND RECOGNITION OF METHYLATED CPG STEPS IN DNA | X-ray diffraction | 2.15 | 1998-03-10 | ||||
| 246 | 1CVY|1|A+ 1CVY|1|B | 5'-D(*CP*CP*AP*GP*AP*TP*CP*TP*GP*G)-3' | CRYSTAL STRUCTURE OF POLYAMIDE DIMER (IMPYPYPYBETADP)2 BOUND TO CCAGATCTGG | X-ray diffraction | 2.15 | 2000-01-15 | ||||
| 247 | 323D|1|A+ 323D|1|B | DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3') | CRYSTAL STRUCTURES OF D(CCGGGCCM5CGG)-ORTHOGONAL FORM | X-ray diffraction | 2.15 | 1997-05-22 | ||||
| 248 | 324D|1|A+ 324D|1|B | DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3') | CRYSTAL STRUCTURES OF D(CCGGGCCM5CGG)-ORTHOGONAL FORM | X-ray diffraction | 2.15 | 1997-05-22 | ||||
| 249 | 1D60|1|A+ 1D60|1|B | DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3') | THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: TRIGONAL FORM | X-ray diffraction | 2.2 | 1993-04-15 | ||||
| 250 | 1CGC|1|A+ 1CGC|1|B | DNA (5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | DOUBLE HELIX CONFORMATION GROOVE DIMENSIONS AND LIGAND BINDING POTENTIAL OF A G/C-STRETCH IN B-DNA | X-ray diffraction | 2.2 | 1993-04-15 | ||||
| 251 | 401D|1|A | DNA (5'-D(*GP*AP*CP*CP*GP*CP*GP*GP*TP*C)-3') | STRUCTURE OF A DNA IN LOW SALT CONDITIONS D(GACCGCGGTC) | X-ray diffraction | 2.2 | 1998-07-06 | ||||
| 252 | 1FHY|1|A+ 1FHY|1|B | DNA (5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3') | PSORALEN CROSS-LINKED D(CCGCTAGCGG) FORMS HOLLIDAY JUNCTION | X-ray diffraction | 2.2 | 2001-04-21 | ||||
| 253 | 382D|1|A | DNA (5'-D(*CP*CP*GP*CP*CP*GP*GP*CP*GP*G)-3') | HYDRATION AND RECOGNITION OF METHYLATED CPG STEPS IN DNA. | X-ray diffraction | 2.2 | 1999-10-14 | ||||
| 254 | 319D|1|A+ 319D|1|B | DNA (5'-D(*CP*CP*GP*GP*GP*(CBR)P*CP*CP*GP*G)-3') | CRYSTAL STRUCTURES OF D(CCGGG(BR)5CCCGG)-ORTHOGONAL FORM | X-ray diffraction | 2.2 | 1997-05-22 | ||||
| 255 | 1FHZ|1|A+ 1FHZ|1|B | DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3') | PSORALEN CROSS-LINKED D(CCGGTACCGG) FORMS HOLLIDAY JUNCTION | X-ray diffraction | 2.2 | 2001-04-21 | ||||
| 256 | 407D|1|A+ 407D|1|B | DNA (5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*G)-3') | synthetic construct | STRUCTURAL BASIS FOR RECOGNITION OF A-T AND T-A BASE PAIRS IN THE MINOR GROOVE OF B-DNA | X-ray diffraction | 2.2 | 1998-10-19 | |||
| 257 | 1MJM|1|C+ 1MJM|1|D | HALF CONSENSUS DNA OPERATOR DUPLEX | METHIONINE APOREPRESSOR MUTANT (Q44K) COMPLEXED TO HALF OF THE CONSENSUS OPERATOR SEQUENCE | X-ray diffraction | 2.2 | 1999-08-02 | ||||
| 258 | 1QRV|1|C+ 1QRV|1|D | DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3') | CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA | X-ray diffraction | 2.2 | 1999-12-18 | ||||
| 259 | 1CVX|1|A+ 1CVX|1|B | 5'-D(*CP*CP*AP*GP*AP*TP*CP*TP*GP*G)-3' | CRYSTAL STRUCTURE OF POLYAMIDE DIMER (IMPYHPPYBETADP)2 BOUND TO B-DNA DECAMER CCAGATCTGG | X-ray diffraction | 2.27 | 2000-01-15 | ||||
| 260 | 167D|1|A+ 167D|1|B | DNA (5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3') | THE CRYSTAL STRUCTURE OF C-C-A-T-T-A-A-T-G-G: IMPLICATIONS FOR BENDING OF B-DNA AT T-A STEPS | X-ray diffraction | 2.3 | 1994-08-31 | ||||
| 261 | 274D|1|A | DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*(DRUG)GP*G)-3') | CRYSTAL STRUCTURE OF A COVALENT DNA-DRUG ADDUCT: ANTHRAMYCIN BOUND TO C-C-A-A-C-G-T-T-G-G, AND A MOLECULAR EXPLANATION OF SPECIFICITY | X-ray diffraction | 2.3 | 1994-10-21 | ||||
| 262 | 252D|1|A+ 252D|1|B | DNA (5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF THE B-DNA DECAMER D(CGCAATTGCG)2; SEQUENCE-DEPENDENT CROSSED HELIX PACKING | X-ray diffraction | 2.3 | 1996-04-09 | ||||
| 263 | 1K2Z|1|A+ 1K2Z|1|B | 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3' | The Crystal Structure of d(GGCCAATTGG) Complexed with Distamycin. | X-ray diffraction | 2.38 | 2002-08-09 | ||||
| 264 | 2FKC|1|C+ 2FKC|1|D | 5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3' | Crystal Form I of Pre-Reactive Complex of Restriction Endonuclease HinP1I with Cognate DNA and Calcium Ion | X-ray diffraction | 2.39 | 2006-02-21 | ||||
| 265 | 2FL3|1|C+ 2FL3|1|D | 5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3' | Binary Complex of Restriction Endonuclease HinP1I with Cognate DNA | X-ray diffraction | 2.39 | 2006-02-21 | ||||
| 266 | 474D|1|A | DNA (5'-D(*CP*CP*CP*(CBR)P*CP*IP*IP*IP*IP*I)-3') | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-ray diffraction | 2.4 | 1998-12-02 | ||||
| 267 | 375D|1|A | DNA (5'-D(*CP*CP*CP*CP*CP*IP*IP*IP*IP*I)-3') | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-ray diffraction | 2.4 | 1998-12-02 | ||||
| 268 | 261D|1|A+ 261D|1|B | DNA (5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF THE DNA DECAMER D(CGCAATTGCG) COMPLEXED WITH THE MINOR GROOVE BINDING DRUG NETROPSIN | X-ray diffraction | 2.4 | 1997-04-22 | ||||
| 269 | 335D|1|A | DNA (5'-D(*GP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3') | THE CRYSTAL STRUCTURE OF THE DNA DECAMER D(GGCAATTGCG) CONTAINS BOTH MAJOR AND MINOR GROOVE BINDING G.(G.C) TRIPLETS | X-ray diffraction | 2.4 | 1998-08-10 | ||||
| 270 | 1DVL|1|A | 5'-D(*CP*CP*IP*IP*CP*IP*CP*CP*IP*I)-3' | CRYSTAL STRUCTURE OF THE 1:1 NETROPSIN-DECAMER D(CCIICICCII)2 COMPLEX WITH ONLY ONE DRUG BOUND AT ONE END | X-ray diffraction | 2.4 | 2002-03-29 | ||||
| 271 | 474D|1|B | DNA (5'-D(*CP*CP*CP*(CBR)P*CP*IP*IP*IP*IP*I)-3') | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-ray diffraction | 2.4 | 1998-12-02 | ||||
| 272 | 375D|1|B | DNA (5'-D(*CP*CP*CP*CP*CP*IP*IP*IP*IP*I)-3') | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-ray diffraction | 2.4 | 1998-12-02 | ||||
| 273 | 1DVL|1|B | 5'-D(*CP*CP*IP*IP*CP*IP*CP*CP*IP*I)-3' | CRYSTAL STRUCTURE OF THE 1:1 NETROPSIN-DECAMER D(CCIICICCII)2 COMPLEX WITH ONLY ONE DRUG BOUND AT ONE END | X-ray diffraction | 2.4 | 2002-03-29 | ||||
| 274 | 375D|1|C | DNA (5'-D(*CP*CP*CP*CP*CP*IP*IP*IP*IP*I)-3') | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-ray diffraction | 2.4 | 1998-12-02 | ||||
| 275 | 474D|1|C | DNA (5'-D(*CP*CP*CP*(CBR)P*CP*IP*IP*IP*IP*I)-3') | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-ray diffraction | 2.4 | 1998-12-02 | ||||
| 276 | 474D|1|D | DNA (5'-D(*CP*CP*CP*(CBR)P*CP*IP*IP*IP*IP*I)-3') | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-ray diffraction | 2.4 | 1998-12-02 | ||||
| 277 | 375D|1|D | DNA (5'-D(*CP*CP*CP*CP*CP*IP*IP*IP*IP*I)-3') | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-ray diffraction | 2.4 | 1998-12-02 | ||||
| 278 | 1DCV|1|A+ 1DCV|1|B | DNA (5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3') | B-DNA DECAMER WITH CENTRAL TA DINUCLEOTIDE | X-ray diffraction | 2.5 | 2000-04-17 | ||||
| 279 | 1QC1|1|A+ 1QC1|1|B | 5'-D(*CP*CP*GP*CP*CP*GP*GP*CP*GP*G)-3' | CRYSTAL STRUCTURE OF THE SELF-FITTED B-DNA DECAMER D(CCGCCGGCGG) | X-ray diffraction | 2.5 | 1999-05-28 | ||||
| 280 | 237D|1|A | DNA (5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF A DNA DECAMER SHOWING A NOVEL PSEUDO FOUR-WAY HELIX-HELIX JUNCTION | X-ray diffraction | 2.5 | 1996-03-22 | ||||
| 281 | 286D|1|A+ 286D|1|B | DNA (5'-D(*CP*CP*IP*IP*IP*CP*CP*CP*GP*G)-3') | X-RAY AND SOLUTION STUDIES OF DNA OLIGOMERS AND IMPLICATIONS FOR THE STRUCTURAL BASIS OF A-TRACT-DEPENDENT CURVATURE | X-ray diffraction | 2.5 | 1997-05-08 | ||||
| 282 | 325D|1|A+ 325D|1|B | DNA (5'-D(*CP*(5CM)P*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3') | CRYSTAL STRUCTURES OF D(CM5CGGGCCM5CGG)-HEXAGONAL FORM | X-ray diffraction | 2.5 | 1997-05-22 | ||||
| 283 | 1N4E|1|A+ 1N4E|1|B | 5'-D(*GP*CP*TP*TP*AP*AP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3' | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-ray diffraction | 2.5 | 2003-02-04 | ||||
| 284 | 1T4I|1|A+ 1T4I|1|B | 5'-D(*GP*CP*TP*TP*AP*AP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3' | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-ray diffraction | 2.5 | 2004-05-25 | ||||
| 285 | 358D|1|A | DNA (5'-D(*CP*(CBR)P*CP*CP*CP*IP*IP*IP*IP*I)-3') | CRYSTAL STRUCTURE OF THE 2:1 NETROPSIN-DNA DECAMER D(CBRCCCCIIIII) COMPLEX WITH END-TO-END BINDING | X-ray diffraction | 2.5 | 2000-05-07 | ||||
| 286 | 322D|1|A+ 322D|1|B | DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3') | CRYSTAL STRUCTURES OF D(CCGGGCCM5CGG)-HEXAGONAL FORM | X-ray diffraction | 2.5 | 1997-05-22 | ||||
| 287 | 358D|1|B | DNA (5'-D(*CP*(CBR)P*CP*CP*CP*IP*IP*IP*IP*I)-3') | CRYSTAL STRUCTURE OF THE 2:1 NETROPSIN-DNA DECAMER D(CBRCCCCIIIII) COMPLEX WITH END-TO-END BINDING | X-ray diffraction | 2.5 | 2000-05-07 | ||||
| 288 | 1N4E|1|C+ 1N4E|1|D | 5'-D(*GP*CP*TP*TP*AP*AP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3' | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-ray diffraction | 2.5 | 2003-02-04 | ||||
| 289 | 1T4I|1|C+ 1T4I|1|D | 5'-D(*GP*CP*TP*TP*AP*AP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3' | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-ray diffraction | 2.5 | 2004-05-25 | ||||
| 290 | 2FLC|1|E+ 2FLC|1|D+ 2FLC|1|C | 5'-D(*CP*CP*AP*G)-3', 5'-D(P*CP*GP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3' | Post-Reactive Complex of Restriction Endonuclease HinP1I with Nicked Cognate DNA and Magnesium Ions | X-ray diffraction | 2.59 | 2006-02-21 | ||||
| 291 | 309D|1|A+ 309D|1|B | DNA (5'-D(*CP*GP*AP*CP*GP*AP*TP*CP*GP*T)-3') | A DNA DECAMER WITH A STICKY END: THE CRYSTAL STRUCTURE OF D-CGACGATCGT | X-ray diffraction | 2.6 | 1997-01-22 | ||||
| 292 | 1CMA|1|C+ 1CMA|1|D | DNA (5'-D(*TP*TP*AP*GP*AP*CP*GP*TP*CP*T)-3'), DNA (5'-D(*AP*GP*AP*CP*GP*TP*CP*TP*A)-3') | MET REPRESSOR/DNA COMPLEX + S-ADENOSYL-METHIONINE | X-ray diffraction | 2.8 | 1993-10-31 | ||||
| 293 | 1WQZ|1|A+ 1WQZ|1|B | 5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3' | synthetic construct | Complicated water orientations in the minor groove of B-DNA decamer D(CCATTAATGG)2 observed by neutron diffraction measurements | Neutron diffraction | 3 | 2005-06-21 | |||
| 294 | 446D|1|A+ 446D|1|B | DNA (5'-D(*CP*GP*TP*AP*TP*AP*TP*AP*CP*G)-3') | STRUCTURE OF THE OLIGONUCLEOTIDE D(CGTATATACG) AS A SITE SPECIFIC COMPLEX WITH NICKEL IONS | X-ray diffraction | 3 | 1999-03-18 | ||||
| 295 | 446D|1|C+ 446D|1|D | DNA (5'-D(*CP*GP*TP*AP*TP*AP*TP*AP*CP*G)-3') | STRUCTURE OF THE OLIGONUCLEOTIDE D(CGTATATACG) AS A SITE SPECIFIC COMPLEX WITH NICKEL IONS | X-ray diffraction | 3 | 1999-03-18 | ||||
| 296 | 4RVE|1|D+ 4RVE|1|E | DNA (5'-D(*GP*GP*GP*AP*TP*AP*TP*CP*CP*C)-3') | THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS COMPLEXES WITH COGNATE AND NON-COGNATE DNA SEGMENTS | X-ray diffraction | 3 | 1993-04-15 | ||||
| 297 | 4RVE|1|F | DNA (5'-D(*GP*GP*GP*AP*TP*AP*TP*CP*CP*C)-3') | THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS COMPLEXES WITH COGNATE AND NON-COGNATE DNA SEGMENTS | X-ray diffraction | 3 | 1993-04-15 | ||||
| 298 | 1G3V|1|A+ 1G3V|1|B | 5'-D(*CP*GP*TP*GP*TP*AP*CP*AP*CP*G)-3' | CRYSTAL STRUCTURE OF NICKEL-D[CGTGTACACG]2 | X-ray diffraction | 3.1 | 2002-01-11 | ||||
| 299 | 1G3V|1|C+ 1G3V|1|D | 5'-D(*CP*GP*TP*GP*TP*AP*CP*AP*CP*G)-3' | CRYSTAL STRUCTURE OF NICKEL-D[CGTGTACACG]2 | X-ray diffraction | 3.1 | 2002-01-11 | ||||
| 300 | 1MJP|1|C+ 1MJP|1|D | CONSENSUS OPERATOR DUPLEX | METHIONINE APOREPRESSOR MUTANT (Q44K) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR | X-ray diffraction | 3.4 | 1999-08-02 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1XPX|1|C+1XPX|1|D | Structural basis of prospero-DNA interaction; implications for transcription regulation in developing cells | X-RAY DIFFRACTION | 2.8 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 2 | 274D|1|A | CRYSTAL STRUCTURE OF A COVALENT DNA-DRUG ADDUCT: ANTHRAMYCIN BOUND TO C-C-A-A-C-G-T-T-G-G, AND A MOLECULAR EXPLANATION OF SPECIFICITY | X-RAY DIFFRACTION | 2.3 | 10 | B-form double helix,double helix,structure | |
| 3 | 3JY1|1|B+3JY1|1|C | Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from C) | X-RAY DIFFRACTION | 1.754 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 4 | 1T4I|1|A+1T4I|1|B | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-RAY DIFFRACTION | 2.5 | 10 | B-form double helix,double helix,structure | |
| 5 | 2IH2|1|E+2IH2|1|F | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 5-methylpyrimidin-2(1H)-one at the target base partner position | X-RAY DIFFRACTION | 1.61 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 6 | 414D|1|C+414D|1|D | 5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3' | X-RAY DIFFRACTION | 1.9 | 10 | double helix,structure | |
| 7 | 1D02|1|C+1D02|1|D | CRYSTAL STRUCTURE OF MUNI RESTRICTION ENDONUCLEASE IN COMPLEX WITH COGNATE DNA | X-RAY DIFFRACTION | 1.7 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 8 | 260D|1|A | CRYSTAL STRUCTURE OF THE SELF-COMPLEMENTARY 5'-PURINE START DECAMER D(GCACGCGTGC) IN THE A-DNA CONFORMATION-PART II | X-RAY DIFFRACTION | 1.9 | 10 | A-form double helix,double helix,structure | |
| 9 | 1WVL|1|C+1WVL|1|D | Crystal Structure of Multimeric DNA-binding Protein Sac7d-GCN4 with DNA decamer | X-RAY DIFFRACTION | 2.6 | 10 | chromatin,nucleosome,structural | |
| 10 | 1IU3|1|B+1IU3|1|A | CRYSTAL STRUCTURE OF THE E.COLI SEQA PROTEIN COMPLEXED WITH HEMIMETHYLATED DNA | X-RAY DIFFRACTION | 3 | 10 | DNA replication/repair,regulatory | |
| 11 | 383D|1|A+383D|1|B | Hydration and recognition of methylated CPG steps in DNA | X-RAY DIFFRACTION | 1.7 | 10 | A-form double helix,double helix,structure | |
| 12 | 431D|1|A+431D|1|B | 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3' | X-RAY DIFFRACTION | 1.15 | 10 | B-form double helix,double helix,structure | |
| 13 | 1YB9|1|A+1YB9|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(N,N-dimethylaminooxy)ethyl] Thymidine (T*) | X-RAY DIFFRACTION | 1.65 | 10 | A-form double helix,double helix,structure | |
| 14 | 2JG3|1|B+2JG3|1|C | MtaqI with BAZ | X-RAY DIFFRACTION | 1.9 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 15 | 2JG3|1|E+2JG3|1|F | MtaqI with BAZ | X-RAY DIFFRACTION | 1.9 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 16 | 1FHZ|1|A+1FHZ|1|B | PSORALEN CROSS-LINKED D(CCGGTACCGG) FORMS HOLLIDAY JUNCTION | X-RAY DIFFRACTION | 2.2 | 10 | Holliday junction,structure | |
| 17 | 3OD8|1|O+3OD8|1|P | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,regulatory,transferase |
| 18 | 1D60|1|A+1D60|1|B | THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: TRIGONAL FORM | X-RAY DIFFRACTION | 2.2 | 10 | B-form double helix,double helix,structure | |
| 19 | 1MA8|1|A+1MA8|1|B | A-DNA decamer GCGTA(UMS)ACGC with incorporated 2'-methylseleno-uridine | X-RAY DIFFRACTION | 1.3 | 10 | A-form double helix,double helix,structure | |
| 20 | 2ORF|1|A+2ORF|1|B | Directing Macromolecular Conformation Through Halogen Bonds | X-RAY DIFFRACTION | 1.85 | 10 | Holliday junction,structure | |
| 21 | 1JUC|1|A+1JUC|1|B | Crystal Structure Analysis of a Holliday Junction Formed by CCGGTACCGG | X-RAY DIFFRACTION | 2.35 | 10 | Holliday junction,structure | |
| 22 | 1MJM|1|C+1MJM|1|D | METHIONINE APOREPRESSOR MUTANT (Q44K) COMPLEXED TO HALF OF THE CONSENSUS OPERATOR SEQUENCE | X-RAY DIFFRACTION | 2.2 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription |
| 23 | 2VOA|1|C+2VOA|1|D | Structure of an AP Endonuclease from Archaeoglobus fulgidus | X-RAY DIFFRACTION | 1.7 | 10 | double helix,structure | enzyme,hydrolase,lyase,nuclease |
| 24 | 261D|1|A+261D|1|B | CRYSTAL STRUCTURE OF THE DNA DECAMER D(CGCAATTGCG) COMPLEXED WITH THE MINOR GROOVE BINDING DRUG NETROPSIN | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | |
| 25 | 1D1U|1|C+1D1U|1|B | USE OF AN N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE TO FACILITATE CRYSTALLIZATION AND ANALYSIS OF A PSEUDO-16-MER DNA MOLECULE CONTAINING G-A MISPAIRS | X-RAY DIFFRACTION | 2.3 | 10 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 26 | 2IH4|1|B+2IH4|1|C | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing pyrrolo-dC at the target base partner position | X-RAY DIFFRACTION | 2.1 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 27 | 2FLC|1|E+2FLC|1|D+2FLC|1|C | Post-Reactive Complex of Restriction Endonuclease HinP1I with Nicked Cognate DNA and Magnesium Ions | X-RAY DIFFRACTION | 2.59 | 10 | double helix,structure | enzyme,hydrolase,nuclease |
| 28 | 1ZF9|1|A+1ZF9|1|B | GGG Duplex A-DNA | X-RAY DIFFRACTION | 1.38 | 10 | A-form double helix,double helix,structure | |
| 29 | 324D|1|A+324D|1|B | CRYSTAL STRUCTURES OF D(CCGGGCCM5CGG)-ORTHOGONAL FORM | X-RAY DIFFRACTION | 2.15 | 10 | A-form double helix,double helix,structure | |
| 30 | 2D25|1|A+2D25|1|B | C-C-A-G-G-C-M5C-T-G-G; HELICAL FINE STRUCTURE, HYDRATION, AND COMPARISON WITH C-C-A-G-G-C-C-T-G-G | X-RAY DIFFRACTION | 1.75 | 10 | B-form double helix,double helix,structure | |
| 31 | 446D|1|A+446D|1|B | STRUCTURE OF THE OLIGONUCLEOTIDE D(CGTATATACG) AS A SITE SPECIFIC COMPLEX WITH NICKEL IONS | X-RAY DIFFRACTION | 3 | 10 | B-form double helix,double helix,structure | |
| 32 | 1SA3|1|E+1SA3|1|F | An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site | X-RAY DIFFRACTION | 1.95 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 33 | 1ZF5|1|A | GCT duplex B-DNA | X-RAY DIFFRACTION | 0.99 | 10 | B-form double helix,double helix,structure | |
| 34 | 1D8X|1|A+1D8X|1|B | CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G A BASE PAIRS | X-RAY DIFFRACTION | 1.2 | 10 | double helix,feature,mispair,structure | |
| 35 | 3EY2|1|A+3EY2|1|B | A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution | X-RAY DIFFRACTION | 1.04 | 10 | A-form double helix,double helix,structure | |
| 36 | 1K2Z|1|A+1K2Z|1|B | The Crystal Structure of d(GGCCAATTGG) Complexed with Distamycin. | X-RAY DIFFRACTION | 2.38 | 10 | B-form double helix,double helix,structure | |
| 37 | 3BDP|1|P+3BDP|1|T | DNA POLYMERASE I/DNA COMPLEX | X-RAY DIFFRACTION | 1.9 | 10 | double helix,structure | enzyme,polymerase,transferase |
| 38 | 1DNZ|1|A | A-DNA DECAMER ACCGGCCGGT WITH MAGNESIUM BINDING SITES | X-RAY DIFFRACTION | 1.6 | 10 | A-form double helix,double helix,structure | |
| 39 | 3PA0|1|B | Crystal Structure of Chiral Gamma-PNA with Complementary DNA Strand: Insight Into the Stability and Specificity of Recognition an Conformational Preorganization | X-RAY DIFFRACTION | 1.6 | 10 | NAKB_NA_annotation | NAKB_protein_annotation |
| 40 | 3IXN|1|A+3IXN|1|B | Crystal structure of d(CCGGTACCGG) as B-DNA duplex | X-RAY DIFFRACTION | 2.87 | 10 | double helix,structure | |
| 41 | 1DVL|1|B | CRYSTAL STRUCTURE OF THE 1:1 NETROPSIN-DECAMER D(CCIICICCII)2 COMPLEX WITH ONLY ONE DRUG BOUND AT ONE END | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | |
| 42 | 3QYM|1|O | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-RAY DIFFRACTION | 3.2 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 43 | 1ZF4|1|A+1ZF4|1|B | ATC Four-stranded DNA Holliday Junction | X-RAY DIFFRACTION | 1.65 | 10 | Holliday junction,structure | |
| 44 | 1ZFF|1|A | TTC Duplex B-DNA | X-RAY DIFFRACTION | 0.94 | 10 | double helix,structure | |
| 45 | 5DNB|1|A | STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-G-T-T-G-G AND COMPARISON WITH ISOMORPHOUS DECAMERS C-C-A-A-G-A-T-T-G-G AND C-C-A-G-G-C-C-T-G-G | X-RAY DIFFRACTION | 1.4 | 10 | B-form double helix,double helix,structure | |
| 46 | 1T4I|1|C+1T4I|1|D | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-RAY DIFFRACTION | 2.5 | 10 | B-form double helix,double helix,structure | |
| 47 | 3I5E|1|A | Allosteric Modulation of DNA by Small Molecules | X-RAY DIFFRACTION | 0.98 | 10 | B-form double helix,double helix,structure | |
| 48 | 2NP6|1|B+2NP6|1|C | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target position | X-RAY DIFFRACTION | 2.1 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 49 | 1BD1|1|A | CRYSTALLOGRAPHIC STUDY OF ONE TURN OF G/C-RICH B-DNA | X-RAY DIFFRACTION | 1.6 | 10 | B-form double helix,double helix,structure | |
| 50 | 1IKK|1|A+1IKK|1|B | Intrinsic Bending and Deformability at the T-A step of CCTTTAAAGG: A Comparative Analysis of T-A and A-T steps within A-tracts | X-RAY DIFFRACTION | 1.6 | 10 | B-form double helix,double helix,structure | |
| 51 | 3GOM|1|A+3GOM|1|B | Barium bound to the Holliday junction sequence d(TCGGCGCCGA)4 | X-RAY DIFFRACTION | 2.3 | 10 | Holliday junction,structure | |
| 52 | 334D|1|A+334D|1|B | DEFINING GC-SPECIFICITY IN THE MINOR GROOVE: SIDE-BY-SIDE BINDING OF THE DI-IMIDAZOLE LEXITROPSIN TO C-A-T-G-G-C-C-A-T-G | X-RAY DIFFRACTION | 1.8 | 10 | B-form double helix,double helix,structure | |
| 53 | 358D|1|B | CRYSTAL STRUCTURE OF THE 2:1 NETROPSIN-DNA DECAMER D(CBRCCCCIIIII) COMPLEX WITH END-TO-END BINDING | X-RAY DIFFRACTION | 2.5 | 10 | B-form double helix,double helix,structure | |
| 54 | 3I5L|1|A+3I5L|1|B | Allosteric Modulation of DNA by Small Molecules | X-RAY DIFFRACTION | 1.18 | 10 | B-form double helix,double helix,structure | |
| 55 | 349D|1|A | X-RAY CRYSTAL STRUCTURES OF THE DECAMER DGACCGCGGTC: HIGH SALT CONCENTRATION | X-RAY DIFFRACTION | 1.9 | 10 | A-form double helix,double helix,structure | |
| 56 | 323D|1|A+323D|1|B | CRYSTAL STRUCTURES OF D(CCGGGCCM5CGG)-ORTHOGONAL FORM | X-RAY DIFFRACTION | 2.15 | 10 | A-form double helix,double helix,structure | |
| 57 | 408D|1|A+408D|1|B | STRUCTURAL BASIS FOR RECOGNITION OF A-T AND T-A BASE PAIRS IN THE MINOR GROOVE OF B-DNA | X-RAY DIFFRACTION | 2.1 | 10 | B-form double helix,double helix,structure | |
| 58 | 1G3V|1|C+1G3V|1|D | CRYSTAL STRUCTURE OF NICKEL-D[CGTGTACACG]2 | X-RAY DIFFRACTION | 3.1 | 10 | B-form double helix,double helix,structure | |
| 59 | 1L6B|1|A+1L6B|1|B | CRYSTAL STRUCTURE ANALYSIS OF THE ALL DNA HOLLIDAY JUNCTION STRUCTURE OF CCGGTACM5CGG | X-RAY DIFFRACTION | 1.5 | 10 | Holliday junction,structure | |
| 60 | 1CVX|1|A+1CVX|1|B | CRYSTAL STRUCTURE OF POLYAMIDE DIMER (IMPYHPPYBETADP)2 BOUND TO B-DNA DECAMER CCAGATCTGG | X-RAY DIFFRACTION | 2.27 | 10 | B-form double helix,double helix,structure | |
| 61 | 2FIJ|1|A+2FIJ|1|B | Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-aU-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and Arabino-Uridine (aU) | X-RAY DIFFRACTION | 1.19 | 10 | double helix,structure | |
| 62 | 3G2D|1|I+3G2D|1|H | Complex of Mth0212 and a 4 bp dsDNA with 3'-overhang | X-RAY DIFFRACTION | 2.3 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 63 | 1D13|1|A | MOLECULAR STRUCTURE OF AN A-DNA DECAMER D(ACCGGCCGGT) | X-RAY DIFFRACTION | 2 | 10 | A-form double helix,double helix,structure | |
| 64 | 3QYM|1|P | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-RAY DIFFRACTION | 3.2 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 65 | 3LDY|1|C+3LDY|1|B | An extraordinary mechanism of DNA perturbation exhibited by the rare-cutting HNH restriction endonuclease PacI | X-RAY DIFFRACTION | 1.97 | 10 | B-form double helix,double helix,feature,mispair,structure | enzyme,hydrolase,nuclease |
| 66 | 3QYM|1|N | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-RAY DIFFRACTION | 3.2 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 67 | 2WIW|1|C+2WIW|1|D | Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate | X-RAY DIFFRACTION | 1.8 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 68 | 3G38|1|G+3G38|1|K | The catalytically inactive mutant Mth0212 (D151N) in complex with an 8 bp dsDNA | X-RAY DIFFRACTION | 3.04 | 10 | double helix,structure | enzyme,hydrolase,nuclease |
| 69 | 2OYT|1|C+2OYT|1|B | Crystal Structure of UNG2/DNA(TM) | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 70 | 1SA3|1|C+1SA3|1|D | An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site | X-RAY DIFFRACTION | 1.95 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 71 | 3ODA|1|O+3ODA|1|P | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-RAY DIFFRACTION | 2.64 | 10 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,regulatory,transferase |
| 72 | 1ZF6|1|A+1ZF6|1|B | TGG DUPLEX A-DNA | X-RAY DIFFRACTION | 1.5 | 10 | A-form double helix,double helix,structure | |
| 73 | 348D|1|A | X-RAY CRYSTAL STRUCTURES OF THE DECAMER DGACCGCGGTC: LOW SALT CONCENTRATION | X-RAY DIFFRACTION | 1.7 | 10 | A-form double helix,double helix,structure | |
| 74 | 1S23|1|A | Crystal Structure Analysis of the B-DNA Decamer CGCAATTGCG | X-RAY DIFFRACTION | 1.6 | 10 | B-form double helix,double helix,structure | |
| 75 | 1H9D|1|E+1H9D|1|F | Aml1/cbf-beta/dna complex | X-RAY DIFFRACTION | 2.6 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,runt,transcription |
| 76 | 2IH5|1|B+2IH5|1|C | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target base partner position | X-RAY DIFFRACTION | 1.8 | 10 | enzyme,methylase,transferase | |
| 77 | 3R86|1|B | Crystal structure of d(CCGGTACCGG)2 as B-DNA duplex grown with 5 mM CoCl2 | X-RAY DIFFRACTION | 2.8 | 19 | double helix,structure | |
| 78 | 474D|1|B | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | |
| 79 | 137D|1|A+137D|1|B | A-DNA DECAMER D(GCGGGCCCGC)-ORTHORHOMBIC CRYSTAL FORM | X-RAY DIFFRACTION | 1.7 | 10 | A-form double helix,double helix,structure | |
| 80 | 1NT8|1|A+1NT8|1|B | Structural Characterisation of the Holliday junction formed by the sequence CCGGTACCGG at 2.00 A | X-RAY DIFFRACTION | 2 | 10 | Holliday junction,structure | |
| 81 | 3EY0|1|A+3EY0|1|B | A new form of DNA-drug interaction in the minor groove of a coiled coil | X-RAY DIFFRACTION | 2.52 | 10 | NAKB_NA_annotation | NAKB_protein_annotation |
| 82 | 2OXM|1|C+2OXM|1|B | Crystal structure of a UNG2/modified DNA complex that represent a stabilized short-lived extrahelical state in ezymatic DNA base flipping | X-RAY DIFFRACTION | 2.5 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 83 | 2R8K|1|U+2R8K|1|Q | Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA | X-RAY DIFFRACTION | 3.3 | 10 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 84 | 1Y7F|1|A+1Y7F|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-[hydroxy(methyleneamino)oxy]ethyl] Thymidine (T*) | X-RAY DIFFRACTION | 1.6 | 10 | A-form double helix,double helix,structure | |
| 85 | 1ZF0|1|A+1ZF0|1|B | B-DNA | X-RAY DIFFRACTION | 1.5 | 10 | B-form double helix,double helix,structure | |
| 86 | 3Q0D|1|B | Crystal structure of SUVH5 SRA- hemi methylated CG DNA complex | X-RAY DIFFRACTION | 2.3704 | 27 | enzyme,methylase,transferase | |
| 87 | 3QYM|1|L | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-RAY DIFFRACTION | 3.2 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 88 | 1ZFA|1|A+1ZFA|1|B | GGA Duplex A-DNA | X-RAY DIFFRACTION | 1.56 | 10 | A-form double helix,double helix,structure | |
| 89 | 196D|1|A+196D|1|B | CRYSTAL STRUCTURE OF C-T-C-T-C-G-A-G-A-G: IMPLICATIONS FOR THE STRUCTURE OF THE HOLLIDAY JUNCTION | X-RAY DIFFRACTION | 1.7 | 10 | B-form double helix,double helix,structure | |
| 90 | 1S1K|1|A | INFLUENCE OF GROOVE INTERACTIONS ON DNA HOLLIDAY JUNCTION FORMATION | X-RAY DIFFRACTION | 1.9 | 10 | B-form double helix,double helix,structure | |
| 91 | 1D57|1|A+1D57|1|B | ALTERNATIVE STRUCTURES FOR ALTERNATING POLY(DA-DT) TRACTS: THE STRUCTURE OF THE B-DNA DECAMER C-G-A-T-A-T-A-T-C-G | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
| 92 | 158D|1|A+158D|1|B | CRYSTALLOGRAPHIC ANALYSIS OF C-C-A-A-G-C-T-T-G-G AND ITS IMPLICATIONS FOR BENDING IN B-DNA | X-RAY DIFFRACTION | 1.9 | 10 | B-form double helix,double helix,structure | |
| 93 | 1G38|1|E+1G38|1|F | ADENINE-SPECIFIC METHYLTRANSFERASE M. TAQ I/DNA COMPLEX | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 94 | 1CVY|1|A+1CVY|1|B | CRYSTAL STRUCTURE OF POLYAMIDE DIMER (IMPYPYPYBETADP)2 BOUND TO CCAGATCTGG | X-RAY DIFFRACTION | 2.15 | 10 | B-form double helix,double helix,structure | |
| 95 | 1ZF3|1|A+1ZF3|1|B | ATC Four-stranded DNA Holliday Junction | X-RAY DIFFRACTION | 1.84 | 10 | Holliday junction,structure | |
| 96 | 1I6J|1|C+1I6J|1|B | CRYSTAL STRUCTURE OF A PSEUDO-16-MER DNA WITH STACKED GUANINES AND TWO G-A MISPAIRS COMPLEXED WITH THE N-TERMINAL FRAGMENT OF MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 97 | 410D|1|A+410D|1|B | DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-ETHOXYMETHYLENE RIBONUCLEOSIDE | X-RAY DIFFRACTION | 1.6 | 10 | A-form double helix,double helix,structure | |
| 98 | 3KDE|1|A+3KDE|1|B | Crystal structure of the THAP domain from D. melanogaster P-element transposase in complex with its natural DNA binding site | X-RAY DIFFRACTION | 1.74 | 10 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,recombinase,regulatory |
| 99 | 1ZF2|1|A+1ZF2|1|B | Four-stranded DNA Holliday Junction (CCC) | X-RAY DIFFRACTION | 1.95 | 10 | Holliday junction,structure | |
| 100 | 395D|1|A | CRYSTAL STRUCTURES OF TWO ISOMORPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC) | X-RAY DIFFRACTION | 1.9 | 10 | A-form double helix,double helix,structure | |
| 101 | 1J3E|1|B+1J3E|1|C | Crystal Structure of the E.coli SeqA protein complexed with N6-methyladenine- guanine mismatch DNA | X-RAY DIFFRACTION | 2.5 | 10 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
| 102 | 1YFI|1|C+1YFI|1|D | Crystal Structure of restriction endonuclease MspI in complex with its cognate DNA in P212121 space group | X-RAY DIFFRACTION | 2.7 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 103 | 325D|1|A+325D|1|B | CRYSTAL STRUCTURES OF D(CM5CGGGCCM5CGG)-HEXAGONAL FORM | X-RAY DIFFRACTION | 2.5 | 10 | A-form double helix,double helix,structure | |
| 104 | 375D|1|A | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | |
| 105 | 2IBT|1|E+2IBT|1|F | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position and an abasic site analog at the target base partner position | X-RAY DIFFRACTION | 1.7 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 106 | 2FKC|1|C+2FKC|1|D | Crystal Form I of Pre-Reactive Complex of Restriction Endonuclease HinP1I with Cognate DNA and Calcium Ion | X-RAY DIFFRACTION | 2.39 | 10 | double helix,structure | enzyme,hydrolase,nuclease |
| 107 | 1ZEZ|1|A+1ZEZ|1|B | ACC Holliday Junction | X-RAY DIFFRACTION | 2 | 10 | Holliday junction,structure | |
| 108 | 4RVE|1|F | THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS COMPLEXES WITH COGNATE AND NON-COGNATE DNA SEGMENTS | X-RAY DIFFRACTION | 3 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 109 | 2FL3|1|C+2FL3|1|D | Binary Complex of Restriction Endonuclease HinP1I with Cognate DNA | X-RAY DIFFRACTION | 2.39 | 10 | double helix,structure | enzyme,hydrolase,nuclease |
| 110 | 2ORG|1|A+2ORG|1|B | Directing Macromolecular Conformation Through Halogen Bonds | X-RAY DIFFRACTION | 2 | 10 | Holliday junction,structure | |
| 111 | 3OD8|1|I | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,regulatory,transferase |
| 112 | 3Q0D|1|C | Crystal structure of SUVH5 SRA- hemi methylated CG DNA complex | X-RAY DIFFRACTION | 2.3704 | 24 | enzyme,methylase,transferase | |
| 113 | 1WQZ|1|A+1WQZ|1|B | Complicated water orientations in the minor groove of B-DNA decamer D(CCATTAATGG)2 observed by neutron diffraction measurements | NEUTRON DIFFRACTION | 3 | 10 | B-form double helix,double helix,structure | |
| 114 | 1N4E|1|C+1N4E|1|D | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-RAY DIFFRACTION | 2.5 | 10 | B-form double helix,double helix,structure | |
| 115 | 396D|1|A | CRYSTAL STRUCTURES OF TWO ISOMOPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC) | X-RAY DIFFRACTION | 1.8 | 10 | A-form double helix,double helix,structure | |
| 116 | 318D|1|A+318D|1|B | CRYSTAL STRUCTURES OF D(CCGGGCC(BR)5CGG)-HEXAGONAL FORM | X-RAY DIFFRACTION | 2 | 10 | A-form double helix,double helix,structure | |
| 117 | 1D62|1|A | THE STRUCTURE OF A /B-DNA$ DECAMER WITH AN I(SLASH)*A MISMATCH AND COMPARISON WITH THE G(SLASH)*A MISMATCH | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
| 118 | 414D|1|A+414D|1|B | 5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3' | X-RAY DIFFRACTION | 1.9 | 10 | double helix,structure | |
| 119 | 322D|1|A+322D|1|B | CRYSTAL STRUCTURES OF D(CCGGGCCM5CGG)-HEXAGONAL FORM | X-RAY DIFFRACTION | 2.5 | 10 | A-form double helix,double helix,structure | |
| 120 | 1Y84|1|A+1Y84|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(imidazolyl)ethyl] Thymidine (T*) | X-RAY DIFFRACTION | 1.6 | 10 | A-form double helix,double helix,structure | |
| 121 | 375D|1|B | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | |
| 122 | 2IBS|1|E+2IBS|1|F | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 123 | 1MLX|1|A+1MLX|1|B | Crystal Structure Analysis of a 2'-O-[2-(Methylthio)-ethyl]-Modified Oligodeoxynucleotide Duplex | X-RAY DIFFRACTION | 1.25 | 10 | A-form double helix,double helix,structure | |
| 124 | 1WV5|1|A+1WV5|1|B | X-ray structure of the A-decamer GCGTATACGC with a single 2'-o-butyl thymine in place of T6, Mg-form | X-RAY DIFFRACTION | 2.3 | 10 | A-form double helix,double helix,structure | |
| 125 | 1M77|1|A | Near Atomic Resolution Crystal Structure of an A-DNA Decamer d(CCCGATCGGG): Cobalt Hexammine Interactions with A-DNA | X-RAY DIFFRACTION | 1.25 | 10 | A-form double helix,double helix,structure | |
| 126 | 473D|1|A+473D|1|B | NI2+/GUANINE INTERACTIONS AND NETROPSIN/GUANINE STACKING IN D(CGTATATACG)2 | X-RAY DIFFRACTION | 1.58 | 10 | B-form double helix,double helix,structure | |
| 127 | 122D|1|A+122D|1|B | DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR | X-RAY DIFFRACTION | 1.7 | 10 | B-form double helix,double helix,structure | |
| 128 | 1XUX|1|A+1XUX|1|B | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-RAY DIFFRACTION | 1.3 | 10 | A-form double helix,double helix,structure | |
| 129 | 2R8K|1|T+2R8K|1|P | Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA | X-RAY DIFFRACTION | 3.3 | 10 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 130 | 1CMA|1|C+1CMA|1|D | MET REPRESSOR/DNA COMPLEX + S-ADENOSYL-METHIONINE | X-RAY DIFFRACTION | 2.8 | 10 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | |
| 131 | 1Y9S|1|A+1Y9S|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-propargyl Thymidine (T*) | X-RAY DIFFRACTION | 1.55 | 10 | A-form double helix,double helix,structure | |
| 132 | 1BC8|1|A+1BC8|1|B | STRUCTURES OF SAP-1 BOUND TO DNA SEQUENCES FROM THE E74 AND C-FOS PROMOTERS PROVIDE INSIGHTS INTO HOW ETS PROTEINS DISCRIMINATE BETWEEN RELATED DNA TARGETS | X-RAY DIFFRACTION | 1.93 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 133 | 126D|1|A+126D|1|B | CRYSTAL STRUCTURE OF CATGGCCATG AND ITS IMPLICATIONS FOR A-TRACT BENDING MODELS | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
| 134 | 1ZFC|1|A+1ZFC|1|B | ATC Duplex B-DNA | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
| 135 | 1I0O|1|A+1I0O|1|B | 1.6 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE THYMINE IN PLACE OF T6, HIGH K-SALT | X-RAY DIFFRACTION | 2 | 10 | A-form double helix,double helix,structure | |
| 136 | 272D|1|A+272D|1|B | PARALLEL AND ANTIPARALLEL (G.GC)2 TRIPLE HELIX FRAGMENTS IN A CRYSTAL STRUCTURE | X-RAY DIFFRACTION | 2 | 10 | structure,triple helix | |
| 137 | 382D|1|A | HYDRATION AND RECOGNITION OF METHYLATED CPG STEPS IN DNA. | X-RAY DIFFRACTION | 2.2 | 10 | A-form double helix,double helix,structure | |
| 138 | 3JXZ|1|B+3JXZ|1|C | Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T) | X-RAY DIFFRACTION | 1.75 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 139 | 1WV6|1|A+1WV6|1|B | X-ray structure of the A-decamer GCGTATACGC with a single 2'-O-butyl thymine in place of T6, Sr-form | X-RAY DIFFRACTION | 2.55 | 10 | A-form double helix,double helix,structure | |
| 140 | 1H9D|1|G+1H9D|1|H | Aml1/cbf-beta/dna complex | X-RAY DIFFRACTION | 2.6 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,runt,transcription |
| 141 | 4SKN|1|A+4SKN|1|B | A NUCLEOTIDE-FLIPPING MECHANISM FROM THE STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO DNA | X-RAY DIFFRACTION | 2.9 | 10 | enzyme,hydrolase | |
| 142 | 474D|1|A | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | |
| 143 | 319D|1|A+319D|1|B | CRYSTAL STRUCTURES OF D(CCGGG(BR)5CCCGG)-ORTHOGONAL FORM | X-RAY DIFFRACTION | 2.2 | 10 | A-form double helix,double helix,structure | |
| 144 | 3GOJ|1|A+3GOJ|1|B | Barium bound to the Holliday sequence d(CCGGCGCCGG)4 | X-RAY DIFFRACTION | 2.6 | 10 | Holliday junction,structure | |
| 145 | 3PA0|1|A | Crystal Structure of Chiral Gamma-PNA with Complementary DNA Strand: Insight Into the Stability and Specificity of Recognition an Conformational Preorganization | X-RAY DIFFRACTION | 1.6 | 10 | NAKB_NA_annotation | NAKB_protein_annotation |
| 146 | 1G38|1|B+1G38|1|C | ADENINE-SPECIFIC METHYLTRANSFERASE M. TAQ I/DNA COMPLEX | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 147 | 3QYM|1|J | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-RAY DIFFRACTION | 3.2 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 148 | 1ZEY|1|A+1ZEY|1|B | CGG A-DNA | X-RAY DIFFRACTION | 1.7 | 10 | double helix,structure | |
| 149 | 237D|1|A | CRYSTAL STRUCTURE OF A DNA DECAMER SHOWING A NOVEL PSEUDO FOUR-WAY HELIX-HELIX JUNCTION | X-RAY DIFFRACTION | 2.5 | 10 | B-form double helix,double helix,structure | |
| 150 | 3ODA|1|I+3ODA|1|J | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-RAY DIFFRACTION | 2.64 | 10 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,regulatory,transferase |
| 151 | 1DPL|1|A+1DPL|1|B | A-DNA DECAMER GCGTA(T23)TACGC WITH INCORPORATED 2'-METHOXY-3'-METHYLENEPHOSPHATE-THYMIDINE | X-RAY DIFFRACTION | 0.83 | 10 | A-form double helix,double helix,structure | |
| 152 | 1P4Z|1|A | Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
| 153 | 1SM5|1|C+1SM5|1|D | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
| 154 | 3OZ5|1|A+3OZ5|1|B | S-Methyl Carbocyclic LNA | X-RAY DIFFRACTION | 1.36 | 10 | A-form double helix,double helix,structure | |
| 155 | 365D|1|A+365D|1|B | STRUCTURAL BASIS FOR G C RECOGNITION IN THE DNA MINOR GROOVE | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
| 156 | 326D|1|A+326D|1|B | CRYSTAL STRUCTURES OF D(CM5CGGGCCM5CGG)-ORTHOGONAL FORM | X-RAY DIFFRACTION | 2.15 | 10 | A-form double helix,double helix,structure | |
| 157 | 1ZFG|1|A+1ZFG|1|B | CTC Duplex B-DNA | X-RAY DIFFRACTION | 1.75 | 10 | double helix,structure | |
| 158 | 321D|1|A+321D|1|B | CRYSTAL STRUCTURES OF D(CCGGGCCCGG)-ORTHOGONAL FORM | X-RAY DIFFRACTION | 2.15 | 10 | A-form double helix,double helix,structure | |
| 159 | 1WD0|1|B+1WD0|1|C | Crystal structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers | X-RAY DIFFRACTION | 1.9 | 10 | chromatin,nucleosome,structural | |
| 160 | 1L4J|1|A+1L4J|1|B+1L4J|1|C+1L4J|1|D | Holliday Junction TCGGTACCGA with Na and Ca Binding Sites. | X-RAY DIFFRACTION | 1.85 | 10 | Holliday junction,structure | |
| 161 | 2B1C|1|A+2B1C|1|B | 5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3' Zif268 binding site | X-RAY DIFFRACTION | 2.2 | 10 | A-form double helix,double helix,structure | |
| 162 | 1CW9|1|C+1CW9|1|D | DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE | X-RAY DIFFRACTION | 1.55 | 10 | B-form double helix,double helix,structure | |
| 163 | 1JTL|1|A+1JTL|1|B | The crystal structure of d(GGCCAATTGG) Complexed with Distamycin | X-RAY DIFFRACTION | 1.85 | 10 | B-form double helix,double helix,structure | |
| 164 | 3ODA|1|M+3ODA|1|N | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-RAY DIFFRACTION | 2.64 | 10 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,regulatory,transferase |
| 165 | 3QYM|1|I | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-RAY DIFFRACTION | 3.2 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 166 | 1S1L|1|A+1S1L|1|B | Influence of Groove Interactions on the Formation of DNA Holliday Junctions | X-RAY DIFFRACTION | 2.2 | 10 | Holliday junction,structure | |
| 167 | 1ZFM|1|A+1ZFM|1|B | AGC Duplex B-DNA | X-RAY DIFFRACTION | 2.2 | 10 | double helix,structure | |
| 168 | 2AXB|1|A+2AXB|1|B | Crystal Structure Analysis Of A 2-O-[2-(methoxy)ethyl]-2-thiothymidine Modified Oligodeoxynucleotide Duplex | X-RAY DIFFRACTION | 1.61 | 10 | A-form double helix,double helix,structure | |
| 169 | 1G3V|1|A+1G3V|1|B | CRYSTAL STRUCTURE OF NICKEL-D[CGTGTACACG]2 | X-RAY DIFFRACTION | 3.1 | 10 | B-form double helix,double helix,structure | |
| 170 | 1EN8|1|A | 1 A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM | X-RAY DIFFRACTION | 0.985 | 10 | B-form double helix,double helix,structure | |
| 171 | 1DCR|1|A+1DCR|1|B | CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS | X-RAY DIFFRACTION | 1.6 | 10 | double helix,feature,mispair,structure | |
| 172 | 3OD8|1|M | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,regulatory,transferase |
| 173 | 358D|1|A | CRYSTAL STRUCTURE OF THE 2:1 NETROPSIN-DNA DECAMER D(CBRCCCCIIIII) COMPLEX WITH END-TO-END BINDING | X-RAY DIFFRACTION | 2.5 | 10 | B-form double helix,double helix,structure | |
| 174 | 1D23|1|A+1D23|1|B | THE STRUCTURE OF B-HELICAL C-G-A-T-C-G-A-T-C-G AND COMPARISON WITH C-C-A-A-C-G-T-T-G-G. THE EFFECT OF BASE PAIR REVERSALS | X-RAY DIFFRACTION | 1.5 | 10 | B-form double helix,double helix,structure | |
| 175 | 1ZFH|1|A+1ZFH|1|B | TTA Duplex B-DNA | X-RAY DIFFRACTION | 2.51 | 10 | double helix,structure | |
| 176 | 1M6G|1|A+1M6G|1|B | Structural Characterisation of the Holliday Junction TCGGTACCGA | X-RAY DIFFRACTION | 1.652 | 10 | Holliday junction,structure | |
| 177 | 212D|1|A | INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA | X-RAY DIFFRACTION | 1.9 | 10 | A-form double helix,double helix,structure | |
| 178 | 440D|1|A+440D|1|B | HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) | X-RAY DIFFRACTION | 1.1 | 10 | A-form double helix,double helix,structure | |
| 179 | 1CW9|1|A+1CW9|1|B | DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE | X-RAY DIFFRACTION | 1.55 | 10 | B-form double helix,double helix,structure | |
| 180 | 3G2D|1|K+3G2D|1|G | Complex of Mth0212 and a 4 bp dsDNA with 3'-overhang | X-RAY DIFFRACTION | 2.3 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 181 | 3HPO|1|C+3HPO|1|B | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus Y714S mutant bound to G:T mismatch | X-RAY DIFFRACTION | 1.75 | 10 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 182 | 1D56|1|A+1D56|1|B | ALTERNATIVE STRUCTURES FOR ALTERNATING POLY(DA-DT) TRACTS: THE STRUCTURE OF THE B-DNA DECAMER C-G-A-T-A-T-A-T-C-G | X-RAY DIFFRACTION | 1.7 | 10 | B-form double helix,double helix,structure | |
| 183 | 1ZFE|1|A+1ZFE|1|B | GCA Duplex B-DNA | X-RAY DIFFRACTION | 2.5 | 10 | double helix,structure | |
| 184 | 3R86|1|A | Crystal structure of d(CCGGTACCGG)2 as B-DNA duplex grown with 5 mM CoCl2 | X-RAY DIFFRACTION | 2.8 | 15 | double helix,structure | |
| 185 | 3GNK|1|A+3GNK|1|B+3GNK|1|C+3GNK|1|D | Calcium bound to the Holliday junction sequence d(TCGGCGCCGA)4 | X-RAY DIFFRACTION | 2.1 | 10 | Holliday junction,structure | |
| 186 | 3QYM|1|M | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-RAY DIFFRACTION | 3.2 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 187 | 1Y9F|1|A+1Y9F|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-allyl Thymidine (T*) | X-RAY DIFFRACTION | 1.6 | 10 | A-form double helix,double helix,structure | |
| 188 | 474D|1|D | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | |
| 189 | 1ZEW|1|A+1ZEW|1|B | B-DNA | X-RAY DIFFRACTION | 2.25 | 10 | double helix,structure | |
| 190 | 2NP6|1|E+2NP6|1|F | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target position | X-RAY DIFFRACTION | 2.1 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 191 | 240D|1|A+240D|1|B | EFFECT OF END BASE STEPS ON DNA FORM: CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCGGGCCCGG) | X-RAY DIFFRACTION | 2 | 10 | A-form double helix,double helix,structure | |
| 192 | 1SM5|1|A+1SM5|1|B | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
| 193 | 1Q3F|1|C+1Q3F|1|B | Uracil DNA glycosylase bound to a cationic 1-aza-2'-deoxyribose-containing DNA | X-RAY DIFFRACTION | 1.9 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 194 | 1CGC|1|A+1CGC|1|B | DOUBLE HELIX CONFORMATION GROOVE DIMENSIONS AND LIGAND BINDING POTENTIAL OF A G/C-STRETCH IN B-DNA | X-RAY DIFFRACTION | 2.2 | 10 | B-form double helix,double helix,structure | |
| 195 | 3ODA|1|K+3ODA|1|L | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-RAY DIFFRACTION | 2.64 | 10 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,regulatory,transferase |
| 196 | 160D|1|A+160D|1|B | HIGH RESOLUTION CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCCGGCCGGG): NOVEL INTERMOLECULAR BASE-PAIRED G*(G.C) TRIPLETS | X-RAY DIFFRACTION | 1.65 | 10 | A-form double helix,double helix,structure | |
| 197 | 3Q0B|1|A | Crystal structure of SUVH5 SRA- fully methylated CG DNA complex in space group P42212 | X-RAY DIFFRACTION | 2.2 | 10 | enzyme,methylase,transferase | |
| 198 | 252D|1|A+252D|1|B | CRYSTAL STRUCTURE OF THE B-DNA DECAMER D(CGCAATTGCG)2; SEQUENCE-DEPENDENT CROSSED HELIX PACKING | X-RAY DIFFRACTION | 2.3 | 10 | B-form double helix,double helix,structure | |
| 199 | 1YBC|1|A+1YBC|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(benzyloxy)ethyl] Thymidine (T*) | X-RAY DIFFRACTION | 1.8 | 10 | A-form double helix,double helix,structure | |
| 200 | 1EN9|1|A | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. | X-RAY DIFFRACTION | 0.985 | 10 | B-form double helix,double helix,structure | |
| 201 | 1I0J|1|A+1I0J|1|B | 1.06 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE (T23) THYMINE IN PLACE OF T6, HIGH CS-SALT | X-RAY DIFFRACTION | 1.06 | 10 | A-form double helix,double helix,structure | |
| 202 | 1FHY|1|A+1FHY|1|B | PSORALEN CROSS-LINKED D(CCGCTAGCGG) FORMS HOLLIDAY JUNCTION | X-RAY DIFFRACTION | 2.2 | 10 | Holliday junction,structure | |
| 203 | 441D|1|A | HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) | X-RAY DIFFRACTION | 1.5 | 10 | double helix,structure | |
| 204 | 384D|1|A+384D|1|B | HYDRATION AND RECOGNITION OF METHYLATED CPG STEPS IN DNA | X-RAY DIFFRACTION | 2.15 | 10 | A-form double helix,double helix,structure | |
| 205 | 307D|1|A+307D|1|B | Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis | X-RAY DIFFRACTION | 1.85 | 10 | B-form double helix,double helix,structure | |
| 206 | 2BDP|1|T+2BDP|1|P | CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA | X-RAY DIFFRACTION | 1.8 | 10 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 207 | 1DA3|1|A+1DA3|1|B | THE CRYSTAL STRUCTURE OF THE TRIGONAL DECAMER C-G-A-T-C-G-6MEA-T-C-G: A B-DNA HELIX WITH 10.6 BASE-PAIRS PER TURN | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
| 208 | 3QYM|1|K | Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site | X-RAY DIFFRACTION | 3.2 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 209 | 1ZF1|1|A+1ZF1|1|B | CCC A-DNA | X-RAY DIFFRACTION | 1.35 | 10 | A-form double helix,double helix,structure | |
| 210 | 1ZF7|1|A+1ZF7|1|B | GAC Duplex B-DNA | X-RAY DIFFRACTION | 1.05 | 10 | B-form double helix,double helix,structure | |
| 211 | 1IU3|1|D+1IU3|1|E | CRYSTAL STRUCTURE OF THE E.COLI SEQA PROTEIN COMPLEXED WITH HEMIMETHYLATED DNA | X-RAY DIFFRACTION | 3 | 10 | DNA replication/repair,regulatory | |
| 212 | 2GWA|1|A+2GWA|1|B | Crystal Structure of a Complex Formed Between the DNA Holliday Junction and a Bis-Acridine Molecule. | X-RAY DIFFRACTION | 1.75 | 10 | Holliday junction,structure | |
| 213 | 123D|1|A+123D|1|B | DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR | X-RAY DIFFRACTION | 1.7 | 10 | B-form double helix,double helix,structure | |
| 214 | 1Z8V|1|A+1Z8V|1|B | The Structure of d(GGCCAATTGG) Complexed with Netropsin | X-RAY DIFFRACTION | 1.75 | 10 | B-form double helix,double helix,structure | |
| 215 | 1DCV|1|A+1DCV|1|B | B-DNA DECAMER WITH CENTRAL TA DINUCLEOTIDE | X-RAY DIFFRACTION | 2.5 | 10 | double helix,structure | |
| 216 | 307D|1|E+307D|1|F | Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis | X-RAY DIFFRACTION | 1.85 | 10 | B-form double helix,double helix,structure | |
| 217 | 1SK5|1|A+1SK5|1|B | The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition | X-RAY DIFFRACTION | 0.89 | 10 | B-form double helix,double helix,structure | |
| 218 | 307D|1|C+307D|1|D | Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis | X-RAY DIFFRACTION | 1.85 | 10 | B-form double helix,double helix,structure | |
| 219 | 1PWF|1|A+1PWF|1|B | One Sugar Pucker Fits All: Pairing Versatility Despite Conformational Uniformity in TNA | X-RAY DIFFRACTION | 1.16 | 10 | double helix,structure | |
| 220 | 138D|1|A | A-DNA DECAMER D(GCGGGCCCGC)-HEXAGONAL CRYSTAL FORM | X-RAY DIFFRACTION | 1.8 | 10 | A-form double helix,double helix,structure | |
| 221 | 1KGK|1|A+1KGK|1|B | Direct Observation of a Cytosine Analog that Forms Five Hydrogen Bonds to Guanosine; Guanyl G-Clamp | X-RAY DIFFRACTION | 1 | 10 | A-form double helix,double helix,structure | |
| 222 | 1NVY|1|A+1NVY|1|B | Strontium bound to the Holliday junction sequence d(TCGGTACCGA)4 | X-RAY DIFFRACTION | 1.5 | 10 | Holliday junction,structure | |
| 223 | 1Y8V|1|A+1Y8V|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-propyl Thymidine (T*) | X-RAY DIFFRACTION | 1.5 | 10 | A-form double helix,double helix,structure | |
| 224 | 3IGT|1|A+3IGT|1|B+3IGT|1|C+3IGT|1|D | A rare nucleotide base tautomer in the structure of an asymmetric DNA junction | X-RAY DIFFRACTION | 1.9 | 10 | Holliday junction,structure | |
| 225 | 1NVN|1|A+1NVN|1|B | Structural Characterisation of the Holliday junction formed by the sequence CCGGTACCGG at 1.8 A | X-RAY DIFFRACTION | 1.8 | 10 | Holliday junction,structure | |
| 226 | 407D|1|A+407D|1|B | STRUCTURAL BASIS FOR RECOGNITION OF A-T AND T-A BASE PAIRS IN THE MINOR GROOVE OF B-DNA | X-RAY DIFFRACTION | 2.2 | 10 | B-form double helix,double helix,structure | |
| 227 | 2IBS|1|B+2IBS|1|C | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 228 | 3IFF|1|A+3IFF|1|B | 2'-SeMe-A modified DNA decamer | X-RAY DIFFRACTION | 1.75 | 10 | double helix,structure | |
| 229 | 1NR8|1|A | The crystal structure of a D-Lysine-based chiral PNA-DNA duplex | X-RAY DIFFRACTION | 1.66 | 10 | NAKB_NA_annotation | NAKB_protein_annotation |
| 230 | 1QC1|1|A+1QC1|1|B | CRYSTAL STRUCTURE OF THE SELF-FITTED B-DNA DECAMER D(CCGCCGGCGG) | X-RAY DIFFRACTION | 2.5 | 10 | B-form double helix,double helix,structure | |
| 231 | 1ZEX|1|A+1ZEX|1|B | CCG A-DNA | X-RAY DIFFRACTION | 1.65 | 10 | A-form double helix,double helix,structure | |
| 232 | 2IH2|1|B+2IH2|1|C | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 5-methylpyrimidin-2(1H)-one at the target base partner position | X-RAY DIFFRACTION | 1.61 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 233 | 1XUX|1|C+1XUX|1|D | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-RAY DIFFRACTION | 1.3 | 10 | A-form double helix,double helix,structure | |
| 234 | 2IBT|1|B+2IBT|1|C | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position and an abasic site analog at the target base partner position | X-RAY DIFFRACTION | 1.7 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 235 | 1EMH|1|C+1EMH|1|B | CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA | X-RAY DIFFRACTION | 1.8 | 10 | double helix,structure | enzyme,hydrolase |
| 236 | 467D|1|A+467D|1|B | The structure of a decamer forming a four-way junction | X-RAY DIFFRACTION | 2.16 | 10 | Holliday junction,structure | |
| 237 | 3HS1|1|A+3HS1|1|B | Structure of Holliday junction formed by d(CCGGTACCGG); Crystal grown with CoCl2 | X-RAY DIFFRACTION | 2.51 | 10 | Holliday junction,structure | |
| 238 | 220D|1|A | INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA | X-RAY DIFFRACTION | 2 | 10 | A-form double helix,double helix,structure | |
| 239 | 4RVE|1|D+4RVE|1|E | THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS COMPLEXES WITH COGNATE AND NON-COGNATE DNA SEGMENTS | X-RAY DIFFRACTION | 3 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 240 | 432D|1|A+432D|1|B | D(GGCCAATTGG) COMPLEXED WITH DAPI | X-RAY DIFFRACTION | 1.89 | 10 | B-form double helix,double helix,structure | |
| 241 | 2B2B|1|A+2B2B|1|B | Structural distortions in psoralen cross-linked DNA | X-RAY DIFFRACTION | 1.5 | 10 | Holliday junction,structure | |
| 242 | 1XUW|1|A+1XUW|1|B | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-RAY DIFFRACTION | 1.25 | 10 | A-form double helix,double helix,structure | |
| 243 | 1MJP|1|C+1MJP|1|D | METHIONINE APOREPRESSOR MUTANT (Q44K) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR | X-RAY DIFFRACTION | 3.4 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription |
| 244 | 1P54|1|A+1P54|1|B | Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions | X-RAY DIFFRACTION | 1.9 | 10 | Holliday junction,structure | |
| 245 | 1D61|1|A | THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: MONOCLINIC FORM | X-RAY DIFFRACTION | 1.3 | 10 | B-form double helix,double helix,structure | |
| 246 | 3GGI|1|A | Locating monovalent cations in one turn of G/C rich B-DNA | X-RAY DIFFRACTION | 0.98 | 10 | B-form double helix,double helix,structure | |
| 247 | 3OZ4|1|A+3OZ4|1|B | R-Methyl Carbocyclic LNA | X-RAY DIFFRACTION | 1.59 | 10 | A-form double helix,double helix,structure | |
| 248 | 2B1B|1|A+2B1B|1|B | 5'-D(*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3' Zif268 binding site | X-RAY DIFFRACTION | 1.9 | 10 | A-form double helix,double helix,structure | |
| 249 | 1Y86|1|A+1Y86|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(fluoro)ethyl] Thymidine (T*) | X-RAY DIFFRACTION | 1.7 | 10 | A-form double helix,double helix,structure | |
| 250 | 1NQS|1|A+1NQS|1|B | Structural Characterisation of the Holliday Junction formed by the sequence d(TCGGTACCGA) at 1.97 A | X-RAY DIFFRACTION | 1.97 | 10 | Holliday junction,structure | |
| 251 | 3PBX|1|A+3PBX|1|B | Strontium bound to the sequence d(CCGGCGCCGG) | X-RAY DIFFRACTION | 1.879 | 10 | Holliday junction,structure | |
| 252 | 327D|1|A | CRYSTAL STRUCTURES OF D(GM5CGM5CGCGCGC) | X-RAY DIFFRACTION | 1.94 | 10 | A-form double helix,double helix,structure | |
| 253 | 1QRV|1|C+1QRV|1|D | CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA | X-RAY DIFFRACTION | 2.2 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),HMG box,chromatin,other α-helix,regulatory,structural,transcription |
| 254 | 2IH4|1|E+2IH4|1|F | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing pyrrolo-dC at the target base partner position | X-RAY DIFFRACTION | 2.1 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 255 | 320D|1|A+320D|1|B | CRYSTAL STRUCTURES OF D(CCGGGCCCGG)-ORTHOGONAL FORM | X-RAY DIFFRACTION | 2.15 | 10 | A-form double helix,double helix,structure | |
| 256 | 238D|1|A | CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGG(BR)CATGCCT): COMPARISON WITH D(AGGCATGCCT) AND IMPLICATIONS FOR COBALT HEXAMMINE BINDING TO DNA | X-RAY DIFFRACTION | 2 | 10 | A-form double helix,double helix,structure | |
| 257 | 446D|1|C+446D|1|D | STRUCTURE OF THE OLIGONUCLEOTIDE D(CGTATATACG) AS A SITE SPECIFIC COMPLEX WITH NICKEL IONS | X-RAY DIFFRACTION | 3 | 10 | B-form double helix,double helix,structure | |
| 258 | 3OD8|1|K | Human PARP-1 zinc finger 1 (Zn1) bound to DNA | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,regulatory,transferase |
| 259 | 2WBU|1|B+2WBU|1|C | CRYSTAL STRUCTURE OF THE ZINC FINGER DOMAIN OF KLF4 BOUND TO ITS TARGET DNA | X-RAY DIFFRACTION | 2.5 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 260 | 1WD1|1|B+1WD1|1|C | Crystal structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers | X-RAY DIFFRACTION | 2.2 | 10 | B-form double helix,double helix,structure | chromatin,nucleosome,structural |
| 261 | 232D|1|A | THE HIGH RESOLUTION CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGGCATGCCT) | X-RAY DIFFRACTION | 1.3 | 10 | A-form double helix,double helix,structure | |
| 262 | 3HQE|1|A+3HQE|1|B | Crystal Structure of the decamer CGGGCGCCCG forming a Holliday junction | X-RAY DIFFRACTION | 2.94 | 10 | Holliday junction,structure | |
| 263 | 375D|1|D | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | |
| 264 | 1N4E|1|A+1N4E|1|B | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-RAY DIFFRACTION | 2.5 | 10 | B-form double helix,double helix,structure | |
| 265 | 3OZ3|1|A+3OZ3|1|B | Vinyl Carbocyclic LNA | X-RAY DIFFRACTION | 1.57 | 10 | A-form double helix,double helix,structure | |
| 266 | 3DNB|1|A | HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER | X-RAY DIFFRACTION | 1.3 | 10 | B-form double helix,double helix,feature,mispair,structure | |
| 267 | 1EMJ|1|C+1EMJ|1|B | URACIL-DNA GLYCOSYLASE BOUND TO DNA CONTAINING A 4'-THIO-2'DEOXYURIDINE ANALOG PRODUCT | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 268 | 1ENE|1|A | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. | X-RAY DIFFRACTION | 0.985 | 10 | B-form double helix,double helix,structure | |
| 269 | 1NZG|1|A+1NZG|1|B | Crystal structure of A-DNA decamer GCGTA(3ME)ACGC, with a modified 5-methyluridine | X-RAY DIFFRACTION | 1.6 | 10 | A-form double helix,double helix,structure | |
| 270 | 1DCW|1|A+1DCW|1|B+1DCW|1|C+1DCW|1|D | STRUCTURE OF A FOUR-WAY JUNCTION IN AN INVERTED REPEAT SEQUENCE. | X-RAY DIFFRACTION | 2.1 | 10 | Holliday junction,structure | |
| 271 | 1R3G|1|A+1R3G|1|B | 1.16A X-ray structure of the synthetic DNA fragment with the incorporated 2'-O-[(2-Guanidinium)ethyl]-5-methyluridine residues | X-RAY DIFFRACTION | 1.16 | 10 | A-form double helix,double helix,structure | |
| 272 | 1Y8L|1|A+1Y8L|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(trifluoro)ethyl] Thymidine (T*) | X-RAY DIFFRACTION | 1.5 | 10 | A-form double helix,double helix,structure | |
| 273 | 1D49|1|A+1D49|1|B | THE STRUCTURE OF A B-DNA DECAMER WITH A CENTRAL T-A STEP: C-G-A-T-T-A-A-T-C-G | X-RAY DIFFRACTION | 1.5 | 10 | B-form double helix,double helix,structure | |
| 274 | 1ZF8|1|A+1ZF8|1|B | GGT Duplex A-DNA | X-RAY DIFFRACTION | 1.48 | 10 | A-form double helix,double helix,structure | |
| 275 | 1JGG|1|C+1JGG|1|D | Even-skipped Homeodomain Complexed to AT-rich DNA | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 276 | 3GOO|1|A+3GOO|1|B | Strontium bound to the Holliday junction sequence d(TCGGCGCCGA)4 | X-RAY DIFFRACTION | 2.5 | 10 | Holliday junction,structure | |
| 277 | 1DVL|1|A | CRYSTAL STRUCTURE OF THE 1:1 NETROPSIN-DECAMER D(CCIICICCII)2 COMPLEX WITH ONLY ONE DRUG BOUND AT ONE END | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | |
| 278 | 3OMJ|1|A+3OMJ|1|B | Structural Basis for Cyclic Py-Im Polyamide Allosteric Inhibition of Nuclear Receptor Binding | X-RAY DIFFRACTION | 0.95 | 10 | B-form double helix,double helix,structure | |
| 279 | 309D|1|A+309D|1|B | A DNA DECAMER WITH A STICKY END: THE CRYSTAL STRUCTURE OF D-CGACGATCGT | X-RAY DIFFRACTION | 2.6 | 10 | B-form double helix,double helix,structure | |
| 280 | 1YFI|1|E+1YFI|1|F | Crystal Structure of restriction endonuclease MspI in complex with its cognate DNA in P212121 space group | X-RAY DIFFRACTION | 2.7 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 281 | 1D9R|1|A+1D9R|1|B | CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS | X-RAY DIFFRACTION | 1.5 | 10 | double helix,feature,mispair,structure | |
| 282 | 1I5W|1|A+1I5W|1|B | A-DNA DECAMER GCGTA(TLN)ACGC | X-RAY DIFFRACTION | 1.4 | 10 | A-form double helix,double helix,structure | |
| 283 | 2OKS|1|A | X-ray Structure of a DNA Repair Substrate Containing an Alkyl Interstrand Crosslink at 1.65 Resolution | X-RAY DIFFRACTION | 1.65 | 10 | B-form double helix,double helix,structure | |
| 284 | 474D|1|C | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | |
| 285 | 1WQY|1|A+1WQY|1|B | X-RAY structural analysis of B-DNA decamer D(CCATTAATGG)2 crystal grown in D2O solution | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
| 286 | 335D|1|A | THE CRYSTAL STRUCTURE OF THE DNA DECAMER D(GGCAATTGCG) CONTAINS BOTH MAJOR AND MINOR GROOVE BINDING G.(G.C) TRIPLETS | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | |
| 287 | 221D|1|A+221D|1|B | INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA | X-RAY DIFFRACTION | 1.9 | 10 | A-form double helix,double helix,structure | |
| 288 | 2ORH|1|A+2ORH|1|B | Directing Macromolecular Conformation Through Halogen Bonds | X-RAY DIFFRACTION | 1.9 | 10 | Holliday junction,structure | |
| 289 | 167D|1|A+167D|1|B | THE CRYSTAL STRUCTURE OF C-C-A-T-T-A-A-T-G-G: IMPLICATIONS FOR BENDING OF B-DNA AT T-A STEPS | X-RAY DIFFRACTION | 2.3 | 10 | B-form double helix,double helix,structure | |
| 290 | 411D|1|A+411D|1|B | DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-METHOXYETHYL RIBONUCLEOSIDE | X-RAY DIFFRACTION | 1.93 | 10 | A-form double helix,double helix,structure | |
| 291 | 401D|1|A | STRUCTURE OF A DNA IN LOW SALT CONDITIONS D(GACCGCGGTC) | X-RAY DIFFRACTION | 2.2 | 10 | double helix,structure | |
| 292 | 2FIL|1|C+2FIL|1|D | Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-faT-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and 2'-Fluoroarabino-Thymidine (faT) | X-RAY DIFFRACTION | 1.69 | 10 | double helix,structure | |
| 293 | 183D|1|A | X-RAY STRUCTURE OF A DNA DECAMER CONTAINING 7, 8-DIHYDRO-8-OXOGUANINE | X-RAY DIFFRACTION | 1.6 | 10 | B-form double helix,double helix,structure | |
| 294 | 2FIL|1|A+2FIL|1|B | Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-faT-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and 2'-Fluoroarabino-Thymidine (faT) | X-RAY DIFFRACTION | 1.69 | 10 | double helix,structure | |
| 295 | 2NP7|1|B+2NP7|1|C | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target position and pyrrolo-dC at the target base partner position | X-RAY DIFFRACTION | 1.9 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 296 | 375D|1|C | A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2 | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | |
| 297 | 213D|1|A+213D|1|B | CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCIGGCCM5CGG) AT 1.6 ANGSTROMS SHOWING THE UNEXPECTED WOBBLE I.M5C BASE PAIR | X-RAY DIFFRACTION | 1.6 | 10 | A-form double helix,double helix,structure | |
| 298 | 1ZFB|1|A+1ZFB|1|B | GGC Duplex B-DNA | X-RAY DIFFRACTION | 1.65 | 10 | B-form double helix,double helix,structure | |
| 299 | 286D|1|A+286D|1|B | X-RAY AND SOLUTION STUDIES OF DNA OLIGOMERS AND IMPLICATIONS FOR THE STRUCTURAL BASIS OF A-TRACT-DEPENDENT CURVATURE | X-RAY DIFFRACTION | 2.5 | 10 | B-form double helix,double helix,structure | |
| 300 | 1P4Y|1|A+1P4Y|1|B | Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions | X-RAY DIFFRACTION | 1.7 | 10 | Holliday junction,structure |
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