Equivalence class DNA_4.0_40062.1 Current
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2DP6|1|C+ 2DP6|1|D (rep) | 5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*CP*GP*CP*AP*AP*CP*A)-3' | Crystal structure of uracil-DNA glycosylase in complex with AP:C containing DNA | X-ray diffraction | 1.8 | 2007-05-22 | ||||
2 | 2DEM|1|C+ 2DEM|1|D | 5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*AP*GP*CP*AP*AP*CP*A)-3' | synthetic construct | Crystal structure of Uracil-DNA glycosylase in complex with AP:A containing DNA | X-ray diffraction | 1.95 | 2007-04-24 | |||
3 | 2DDG|1|C+ 2DDG|1|D | 5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*GP*GP*CP*AP*AP*CP*A)-3' | Crystal structure of uracil-DNA glycosylase in complex with AP:G containing DNA | X-ray diffraction | 2.1 | 2007-02-13 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 2DEM|1|C+2DEM|1|D | Crystal structure of Uracil-DNA glycosylase in complex with AP:A containing DNA | X-RAY DIFFRACTION | 1.95 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
2 | 2DP6|1|C+2DP6|1|D | Crystal structure of uracil-DNA glycosylase in complex with AP:C containing DNA | X-RAY DIFFRACTION | 1.8 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
3 | 2DDG|1|C+2DDG|1|D | Crystal structure of uracil-DNA glycosylase in complex with AP:G containing DNA | X-RAY DIFFRACTION | 2.1 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
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