Equivalence class DNA_4.0_39850.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1JB7|1|D (rep) | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | DNA G-Quartets in a 1.86 A Resolution Structure of an Oxytricha nova Telomeric Protein-DNA Complex | X-ray diffraction | 1.86 | 2001-06-11 | ||||
| 2 | 1PH4|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*CP*G)-3' | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGCG | X-ray diffraction | 2.3 | 2003-06-17 | ||||
| 3 | 1PH3|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*TP*G)-3' | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGTG | X-ray diffraction | 2.3 | 2003-06-17 | ||||
| 4 | 1PH8|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*CP*GP*G)-3' | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGCGG | X-ray diffraction | 2.36 | 2003-06-17 | ||||
| 5 | 1PA6|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*AP*GP*G)-3' | Crystal structure of the OXYTRICHA nova telomere end-binding protein complexed with noncognate ssDNA GGGGTTTTGAGG | X-ray diffraction | 2.45 | 2003-06-10 | ||||
| 6 | 1PH9|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*AP*GP*G)-3' | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGAGG | X-ray diffraction | 2.5 | 2003-06-17 | ||||
| 7 | 1PHJ|1|D | 5'-D(*GP*GP*(3DR)P*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GG(3DR)GTTTTGGGG | X-ray diffraction | 2.5 | 2003-06-17 | ||||
| 8 | 1OTC|1|D | DNA (5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3') | THE O. NOVA TELOMERE END BINDING PROTEIN COMPLEXED WITH SINGLE STRAND DNA | X-ray diffraction | 2.8 | 1999-04-12 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1PA6|1|D | Crystal structure of the OXYTRICHA nova telomere end-binding protein complexed with noncognate ssDNA GGGGTTTTGAGG | X-RAY DIFFRACTION | 2.45 | 12 | function,quadruplex,structure,telomeric DNA | chromatin,structural,telomere |
| 2 | 1PH3|1|D | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGTG | X-RAY DIFFRACTION | 2.3 | 12 | quadruplex,structure | chromatin,structural,telomere |
| 3 | 1PH4|1|D | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGCG | X-RAY DIFFRACTION | 2.3 | 12 | quadruplex,structure | chromatin,structural,telomere |
| 4 | 1JB7|1|D | DNA G-Quartets in a 1.86 A Resolution Structure of an Oxytricha nova Telomeric Protein-DNA Complex | X-RAY DIFFRACTION | 1.86 | 12 | function,quadruplex,structure,telomeric DNA | chromatin,structural,telomere |
| 5 | 1OTC|1|D | THE O. NOVA TELOMERE END BINDING PROTEIN COMPLEXED WITH SINGLE STRAND DNA | X-RAY DIFFRACTION | 2.8 | 12 | function,quadruplex,structure,telomeric DNA | chromatin,structural,telomere |
| 6 | 1PH9|1|D | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGAGG | X-RAY DIFFRACTION | 2.5 | 12 | quadruplex,structure | chromatin,structural,telomere |
| 7 | 1PH8|1|D | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGCGG | X-RAY DIFFRACTION | 2.36 | 12 | quadruplex,structure | chromatin,structural,telomere |
| 8 | 1PHJ|1|D | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GG(3DR)GTTTTGGGG | X-RAY DIFFRACTION | 2.5 | 12 | quadruplex,structure | chromatin,structural,telomere |
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