Equivalence class DNA_4.0_38081.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3IV5|1|C+ 3IV5|1|D (rep) | DNA (27-MER) | Crystal structure of Fis bound to 27 bp optimal binding sequence F1 | X-ray diffraction | 2.9 | 2010-04-28 | ||||
| 2 | 3JRE|1|C+ 3JRE|1|D | DNA (27-MER) | Crystal structure of Fis bound to 27 bp DNA F26 containing A-tract at center | X-ray diffraction | 3.17 | 2010-04-28 | ||||
| 3 | 3JRF|1|C+ 3JRF|1|D | DNA (27-MER) | Crystal structure of Fis bound to 27 bp DNA F27 containing a C/G at center | X-ray diffraction | 3.05 | 2010-04-28 | ||||
| 4 | 3JRH|1|C+ 3JRH|1|D | DNA (27-MER) | Crystal structure of Fis bound to 27 bp non consensus sequence DNA F21 | X-ray diffraction | 2.88 | 2010-04-28 | ||||
| 5 | 3JR9|1|C+ 3JR9|1|D | DNA (27-MER) | Crystal structure of Fis bound to 27 bp optimal binding sequence F2 | X-ray diffraction | 2.9 | 2010-04-28 | ||||
| 6 | 3JRI|1|C+ 3JRI|1|D | DNA (27-MER) | Crystal structure of Fis bound to 27 bp non consensus sequence DNA F23 | X-ray diffraction | 3.11 | 2010-04-28 | ||||
| 7 | 3JRC|1|C+ 3JRC|1|D | DNA (27-MER) | Crystal structure of Fis bound to 27 bp DNA F29 containing 5 G/Cs at center | X-ray diffraction | 3.08 | 2010-04-28 | ||||
| 8 | 3JRA|1|C+ 3JRA|1|D | DNA (27-MER) | Crystal structure of Fis bound to 27bp non consensus sequence DNA F6 | X-ray diffraction | 3.11 | 2010-04-28 | ||||
| 9 | 3JRB|1|C+ 3JRB|1|D | DNA (27-MER) | Crystal structure of Fis bound to 27 bp DNA F24 containing T-tract at center | X-ray diffraction | 3.1 | 2010-04-28 | ||||
| 10 | 3JRD|1|C+ 3JRD|1|D | DNA (27-MER) | Crystal structure of Fis bound to 27 bp DNA F25 containing T2A3 sequence at center | X-ray diffraction | 3.1 | 2010-04-28 | ||||
| 11 | 3JRG|1|C+ 3JRG|1|D | DNA (27-MER) | Crystal structure of Fis bound to 27 bp non consensus sequence DNA F18 | X-ray diffraction | 3.11 | 2010-04-28 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3JRI|1|C+3JRI|1|D | Crystal structure of Fis bound to 27 bp non consensus sequence DNA F23 | X-RAY DIFFRACTION | 3.11 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 2 | 3JRG|1|C+3JRG|1|D | Crystal structure of Fis bound to 27 bp non consensus sequence DNA F18 | X-RAY DIFFRACTION | 3.11 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 3 | 3JR9|1|C+3JR9|1|D | Crystal structure of Fis bound to 27 bp optimal binding sequence F2 | X-RAY DIFFRACTION | 2.9 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 4 | 3IV5|1|C+3IV5|1|D | Crystal structure of Fis bound to 27 bp optimal binding sequence F1 | X-RAY DIFFRACTION | 2.9 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 5 | 3JRH|1|C+3JRH|1|D | Crystal structure of Fis bound to 27 bp non consensus sequence DNA F21 | X-RAY DIFFRACTION | 2.88 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 6 | 3JRB|1|C+3JRB|1|D | Crystal structure of Fis bound to 27 bp DNA F24 containing T-tract at center | X-RAY DIFFRACTION | 3.1 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 7 | 3JRD|1|C+3JRD|1|D | Crystal structure of Fis bound to 27 bp DNA F25 containing T2A3 sequence at center | X-RAY DIFFRACTION | 3.1 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 8 | 3JRF|1|C+3JRF|1|D | Crystal structure of Fis bound to 27 bp DNA F27 containing a C/G at center | X-RAY DIFFRACTION | 3.05 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 9 | 3JRE|1|C+3JRE|1|D | Crystal structure of Fis bound to 27 bp DNA F26 containing A-tract at center | X-RAY DIFFRACTION | 3.17 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 10 | 3JRC|1|C+3JRC|1|D | Crystal structure of Fis bound to 27 bp DNA F29 containing 5 G/Cs at center | X-RAY DIFFRACTION | 3.08 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 11 | 3JRA|1|C+3JRA|1|D | Crystal structure of Fis bound to 27bp non consensus sequence DNA F6 | X-RAY DIFFRACTION | 3.11 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
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