Equivalence class DNA_4.0_31495.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3K59|1|T+ 3K59|1|P (rep) | DNA (5'-D(*TP*AP*GP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3') | Crystal structure of E.coli Pol II-normal DNA-dCTP ternary complex | X-ray diffraction | 1.92 | 2010-02-09 | ||||
| 2 | 3K58|1|T+ 3K58|1|P | DNA (5'-D(*TP*AP*AP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3') | Crystal structure of E.coli Pol II-normal DNA-dTTP ternary complex | X-ray diffraction | 2.05 | 2010-02-09 | ||||
| 3 | 3MAQ|1|T+ 3MAQ|1|P | DNA (5'-D(*TP*AP*CP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3') | Crystal structure of E.coli Pol II-normal DNA-dGTP ternary complex | X-ray diffraction | 2.4 | 2010-04-07 |
Release history
| Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 0.13 | 0.14 | 0.15 | 0.16 | 0.17 | 0.18 | 0.19 | 0.20 | 0.21 | 0.22 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2011-02-05 | 2011-02-12 | 2011-02-16 | 2011-02-19 | 2011-02-26 | 2011-03-05 | 2011-03-12 | 2011-03-19 | 2011-03-26 | 2011-04-02 | 2011-04-09 | 2011-04-11 | 2011-04-16 | 2011-04-23 | 2011-04-30 | 2011-05-07 | 2011-05-14 | 2011-05-21 | 2011-05-28 | 2011-06-04 | 2011-06-11 | 2011-06-18 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3K59|1|T+3K59|1|P | Crystal structure of E.coli Pol II-normal DNA-dCTP ternary complex | X-RAY DIFFRACTION | 1.92 | 17 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 2 | 3K58|1|T+3K58|1|P | Crystal structure of E.coli Pol II-normal DNA-dTTP ternary complex | X-RAY DIFFRACTION | 2.05 | 17 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 3 | 3MAQ|1|T+3MAQ|1|P | Crystal structure of E.coli Pol II-normal DNA-dGTP ternary complex | X-RAY DIFFRACTION | 2.4 | 17 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
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