Equivalence class DNA_4.0_31423.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1VRO|1|A+ 1VRO|1|B (rep) | 5'-D(*CP*(GMS)P*CP*GP*CP*G)-3' | Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates for MAD Phasing of a DNA Structure | X-ray diffraction | 1.1 | 2005-04-19 | ||||
| 2 | 2F8W|1|A+ 2F8W|1|B | 5'-D(*CP*AP*CP*GP*TP*G)-3' | Crystal structure of d(CACGTG)2 | X-ray diffraction | 1.2 | 2006-01-31 | ||||
| 3 | 3QBA|1|B | Z-DNA | Reintroducing Electrostatics into Macromolecular Crystallographic Refinement: Z-DNA (X-ray) | X-ray diffraction | 1.53 | 2011-03-02 | ||||
| 4 | 2OBZ|1|A+ 2OBZ|1|B | 5'-D(*CP*GP*CP*GP*(BRU)P*G)-3' | Crystal structure of the The brominated Z-DNA duplex d(CGCG[BrU]G) | X-ray diffraction | 1.1 | 2007-12-25 | ||||
| 5 | 1WOE|1|A+ 1WOE|1|B | Z-DNA hexamer | X-ray structure of a Z-DNA hexamer d(CGCGCG) | X-ray diffraction | 1.5 | 2005-07-26 | ||||
| 6 | 2HTO|1|A+ 2HTO|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DA)-3'), DNA (5'-D(*DTP*DGP*DCP*DGP*DCP*DG)-3') | Ruthenium hexammine ion interactions with Z-DNA | X-ray diffraction | 1.54 | 2006-08-08 | ||||
| 7 | 3FQB|1|A+ 3FQB|1|B | 5'-D(*CP*AP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*TP*G)-3' | Barium interactions with Z-DNA | X-ray diffraction | 1.67 | 2009-02-10 | ||||
| 8 | 3E9W|1|A+ 3E9W|1|B | 5'-D(*CP*AP*CP*AP*CP*G)-3', 5'-D(*CP*GP*TP*GP*TP*G)-3' | X-Ray Crystal Structure of the hexamer DCACACG:Crystal grown in the presence of cobalt(III)hexammine Chloride. | X-ray diffraction | 2.05 | 2008-09-30 | ||||
| 9 | 3F8O|1|A+ 3F8O|1|B | DNA (5'-D(*DCP*DAP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DCP*DGP*DCP*DGP*DTP*DG)-3') | Structure of d(CACGCG).d(CGCGTG) with low concentration of PdCl2 | X-ray diffraction | 1.72 | 2008-11-25 | ||||
| 10 | 3FQ5|1|A+ 3FQ5|1|B | 5'-D(*CP*AP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*TP*G)-3' | synthetic construct | Crystal Structure of d(CACGCG).d(CGCGTG) with 10mM MnCl2 | X-ray diffraction | 2.8 | 2009-02-10 | |||
| 11 | 3FQ5|1|C+ 3FQ5|1|D | 5'-D(*CP*AP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*TP*G)-3' | synthetic construct | Crystal Structure of d(CACGCG).d(CGCGTG) with 10mM MnCl2 | X-ray diffraction | 2.8 | 2009-02-10 | |||
| 12 | 3GCY|1|A+ 3GCY|1|B | 5'-D(*CP*AP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*TP*G)-3' | Crystal studies of d(CACGCG).d(CGCGTG) grown in presence of calcium chloride | X-ray diffraction | 1.8 | 2009-04-07 | ||||
| 13 | 3G2A|1|A+ 3G2A|1|B | 5'-D(*CP*AP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*TP*G)-3' | Crystal structure of d(CACGCG).d(CGCGTG) grown in presence of 1mM MnCl2 | X-ray diffraction | 2 | 2009-03-03 | ||||
| 14 | 3GDA|1|A+ 3GDA|1|B | 5'-D(*CP*AP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*TP*G)-3' | Crystal study of d(CACGCG).d(CGCGTG) grwon in presence of stannous chloride | X-ray diffraction | 1.88 | 2009-04-07 | ||||
| 15 | 1XA2|1|A+ 1XA2|1|B | 5'-D(*CP*GP*CP*GP*CP*A)-3', 5'-D(*TP*GP*CP*GP*CP*G)-3' | Cobalt hexammine induced tautomeric shift in Z-DNA: the structure of d(CGCGCA).d(TGCGCG) in two crystal forms | X-ray diffraction | 1.71 | 2004-11-16 | ||||
| 16 | 1LJX|1|A+ 1LJX|1|B | 5'-D(*TP*GP*CP*GP*CP*A)-3' | THE STRUCTURE OF D(TPGPCPGPCPA)2 AT 293K: COMPARISON OF THE EFFECT OF SEQUENCE AND TEMPERATURE | X-ray diffraction | 1.64 | 2002-05-03 | ||||
| 17 | 1XAM|1|A+ 1XAM|1|B | CGCGCA, TGCGCG | Cobalt hexammine induced tautameric shift in Z-DNA: structure of d(CGCGCA).d(TGCGCG) in two crystal forms. | X-ray diffraction | 1.86 | 2004-11-16 | ||||
| 18 | 3G2R|1|A | 5'-D(*CP*GP*TP*GP*CP*G)-3' | Crystal structure of d(CACGCG).d(CGCGTG) cocrystallized with MnCl2 | X-ray diffraction | 2.15 | 2009-03-03 | ||||
| 19 | 2HTT|1|A+ 2HTT|1|B | DNA (5'-D(*DTP*DGP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DA)-3') | Ruthenium Hexammine ion interactions with Z-DNA | X-ray diffraction | 2.6 | 2006-08-08 | ||||
| 20 | 1I0T|1|A+ 1I0T|1|B | 5'-D(*CP*GP*CP*GP*CP*G)-3' | 0.6 A STRUCTURE OF Z-DNA CGCGCG | X-ray diffraction | 0.6 | 2001-04-04 | ||||
| 21 | 2DCG|1|A+ 2DCG|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | MOLECULAR STRUCTURE OF A LEFT-HANDED DOUBLE HELICAL DNA FRAGMENT AT ATOMIC RESOLUTION | X-ray diffraction | 0.9 | 1989-01-09 | ||||
| 22 | 1ICK|1|A+ 1ICK|1|B | 5'-D(*CP*GP*CP*GP*CP*G)-3' | LEFT-HANDED Z-DNA HEXAMER DUPLEX D(CGCGCG)2 | X-ray diffraction | 0.95 | 2001-04-12 | ||||
| 23 | 293D|1|A+ 293D|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE-2: THE CRYSTAL STRUCTURE OF THE D(CG)3 AND SPERMIDINE COMPLEX | X-ray diffraction | 1 | 1996-12-02 | ||||
| 24 | 292D|1|A+ 292D|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE:THE CRYSTAL STRUCTURE OF THE D(CG)3 AND N-(2-AMINOETHYL)-1,4-DIAMINOBUTANE COMPLEX | X-ray diffraction | 1 | 1996-12-02 | ||||
| 25 | 336D|1|A+ 336D|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | INTERACTION BETWEEN LEFT-HANDED Z-DNA AND POLYAMINE-3 THE CRYSTAL STRUCTURE OF THE D(CG)3 AND THERMOSPERMINE COMPLEX | X-ray diffraction | 1 | 1998-04-10 | ||||
| 26 | 131D|1|A+ 131D|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | THE LOW-TEMPERATURE CRYSTAL STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA REVEALS BINDING OF A SPERMINE MOLECULE IN THE MINOR GROOVE | X-ray diffraction | 1 | 1993-10-15 | ||||
| 27 | 1D48|1|A+ 1D48|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA (MAGNESIUM FREE) AT 1 ANGSTROM RESOLUTION | X-ray diffraction | 1 | 1992-04-15 | ||||
| 28 | 1DJ6|1|A+ 1DJ6|1|B | 5'-D(*CP*GP*CP*GP*CP*G)-3' | COMPLEX OF A Z-DNA HEXAMER, D(CG)3, WITH SYNTHETIC POLYAMINE AT ROOM TEMPERATURE | X-ray diffraction | 1 | 1999-12-18 | ||||
| 29 | 1DCG|1|A+ 1DCG|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | THE MOLECULAR STRUCTURE OF THE LEFT-HANDED Z-DNA DOUBLE HELIX AT 1.0 ANGSTROM ATOMIC RESOLUTION. GEOMETRY, CONFORMATION, AND IONIC INTERACTIONS OF D(CGCGCG) | X-ray diffraction | 1 | 1989-01-09 | ||||
| 30 | 2ELG|1|A+ 2ELG|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3') | The rare crystallographic structure of d(CGCGCG)2: The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)2 at 10 degree celsius | X-ray diffraction | 1 | 2008-04-01 | ||||
| 31 | 1D39|1|A+ 1D39|1|B | DNA (5'-D(*CP*(CU)GP*CP*(CU)GP*CP*(CU)G)-3') | COVALENT MODIFICATION OF GUANINE BASES IN DOUBLE STRANDED DNA: THE 1.2 ANGSTROMS Z-DNA STRUCTURE OF D(CGCGCG) IN THE PRESENCE OF CUCL2 | X-ray diffraction | 1.2 | 1992-04-15 | ||||
| 32 | 145D|1|A+ 145D|1|B | DNA (5'-D(*(MCY)P*GP*GP*GP*(5CM)P*G)-3'), DNA (5'-D(*(MCY)P*GP*CP*CP*(5CM)P*G)-3') | Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) | X-ray diffraction | 1.25 | 1994-01-15 | ||||
| 33 | 145D|1|C+ 145D|1|D | DNA (5'-D(*(MCY)P*GP*CP*CP*(5CM)P*G)-3'), DNA (5'-D(*(5CM)P*DGP*DGP*DGP*(5CM)P*DG)-3') | Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) | X-ray diffraction | 1.25 | 1994-01-15 | ||||
| 34 | 1D41|1|A | DNA (5'-D(*(5CM)P*GP*UP*AP*(5CM)P*G)-3') | STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG) | X-ray diffraction | 1.3 | 1992-04-15 | ||||
| 35 | 1D40|1|A | DNA (5'-D(*(5CM)P*(CU)GP*UP*AP*(5CM)P*(CU)G)-3') | BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2 | X-ray diffraction | 1.3 | 1992-04-15 | ||||
| 36 | 1D76|1|A+ 1D76|1|B | DNA (5'-D(*CP*GP*UP*(1AP)P*CP*G)-3') | CRYSTAL AND MOLECULAR STRUCTURE OF A DNA FRAGMENT CONTAINING A 2-AMINO ADENINE MODIFICATION: THE RELATIONSHIP BETWEEN CONFORMATION, PACKING, AND HYDRATION IN Z-DNA HEXAMERS | X-ray diffraction | 1.3 | 1992-09-15 | ||||
| 37 | 362D|1|A+ 362D|1|B | DNA (5'-D(*TP*GP*CP*GP*CP*A)-3') | THE STRUCTURE OF D(TGCGCA)2 AND A COMPARISON TO OTHER Z-DNA HEXAMERS | X-ray diffraction | 1.3 | 1997-11-20 | ||||
| 38 | 1OMK|1|A+ 1OMK|1|B | 5'-D(*CP*AP*CP*GP*(5IU)P*G)-3' | The Crystal Structure of d(CACG(5IU)G) | X-ray diffraction | 1.3 | 2003-11-04 | ||||
| 39 | 1D40|1|B | DNA (5'-D(*(5CM)P*(CU)GP*UP*AP*(5CM)P*(CU)G)-3') | BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2 | X-ray diffraction | 1.3 | 1992-04-15 | ||||
| 40 | 1D41|1|B | DNA (5'-D(*(5CM)P*GP*UP*AP*(5CM)P*G)-3') | STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG) | X-ray diffraction | 1.3 | 1992-04-15 | ||||
| 41 | 210D|1|A | DNA (5'-D(*CP*GP*TP*(1AP)P*CP*G)-3') | CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A)CG] AND ITS PLATINATED DERIVATIVE | X-ray diffraction | 1.35 | 1996-03-22 | ||||
| 42 | 1DN5|1|A | DNA (5'-D(*(CBR)P*GP*(CBR)P*GP*(CBR)P*G)-3') | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-ray diffraction | 1.4 | 1987-04-16 | ||||
| 43 | 1DN5|1|B | DNA (5'-D(*(CBR)P*GP*(CBR)P*GP*(CBR)P*G)-3') | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-ray diffraction | 1.4 | 1987-04-16 | ||||
| 44 | 417D|1|A+ 417D|1|B | DNA (5'-D(*CP*AP*CP*GP*(C46)P*G)-3') | A THYMINE-LIKE BASE ANALOGUE FORMS WOBBLE PAIRS WITH ADENINE | X-ray diffraction | 1.5 | 1998-09-30 | ||||
| 45 | 1DNF|1|A+ 1DNF|1|B | DNA (5'-D(*CP*GP*CP*GP*(UFP)P*G)-3') | EFFECTS OF 5-FLUOROURACIL/GUANINE WOBBLE BASE PAIRS IN Z-DNA. MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGFG) | X-ray diffraction | 1.5 | 1990-10-15 | ||||
| 46 | 2IE1|1|A+ 2IE1|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3') | Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography | X-ray diffraction | 1.6 | 2007-10-09 | ||||
| 47 | 181D|1|A+ 181D|1|B | DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3') | SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) | X-ray diffraction | 1.6 | 1995-07-19 | ||||
| 48 | 1DN4|1|A | DNA (5'-D(*(CBR)P*GP*(CBR)P*GP*(CBR)P*G)-3') | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-ray diffraction | 1.6 | 1987-04-16 | ||||
| 49 | 211D|1|A | DNA (5'-D(*CP*GP*TP*(1AP)P*CP*(PT(NH3)3)G)-3') | THE CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A) CG] AND ITS PLATINATED DERIVATIVE | X-ray diffraction | 1.6 | 1996-03-22 | ||||
| 50 | 1DN4|1|B | DNA (5'-D(*(CBR)P*GP*(CBR)P*GP*(CBR)P*G)-3') | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-ray diffraction | 1.6 | 1987-04-16 | ||||
| 51 | 351D|1|A+ 351D|1|B | DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3') | X-RAY CRYSTAL STRUCTURES OF THE HEXAMER DCACGCG: CRYSTALS GROWN IN THE PRESENCE OF RUTHENIUM (II) HEXAMMINE CHLORIDE | X-ray diffraction | 1.64 | 1997-09-30 | ||||
| 52 | 400D|1|A+ 400D|1|B | DNA (5'-D(*(5CM)P*GP*GP*CP*(5CM)P*G)-3') | synthetic construct | THE INTRINSIC STRUCTURE AND STABILITY OF OUT-OF-ALTERNATION BASE PAIRS IN Z-DNA | X-ray diffraction | 1.65 | 1998-07-09 | |||
| 53 | 242D|1|A+ 242D|1|B | DNA (5'-D(*CP*GP*CP*GP*(CBR)P*G)-3') | MAD PHASING STRATEGIES EXPLORED WITH A BROMINATED OLIGONUCLEOTIDE CRYSTAL AT 1.65 A RESOLUTION. | X-ray diffraction | 1.65 | 1996-09-19 | ||||
| 54 | 1DA2|1|A+ 1DA2|1|B | DNA (5'-D(*CP*GP*CP*GP*(C45)P*G)-3') | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO4CG): N4-METHOXYCYTOSINE/GUANINE BASE-PAIRS IN Z-DNA | X-ray diffraction | 1.7 | 1993-07-15 | ||||
| 55 | 223D|1|A+ 223D|1|B | DNA (5'-D(*CP*GP*CP*GP*(C46)P*G)-3') | DIRECT OBSERVATION OF TWO BASE-PAIRING MODES OF A CYTOSINE-THYMINE ANALOGUE WITH GUANINE IN A DNA Z-FORM DUPLEX: SIGNIFICANCE FOR BASE ANALOGUE MUTAGENESIS | X-ray diffraction | 1.7 | 1995-12-09 | ||||
| 56 | 1V9G|1|A+ 1V9G|1|B | 5'-D(*CP*GP*CP*GP*CP*G)-3' | synthetic construct | Neutron Crystallographic analysis of the Z-DNA hexamer CGCGCG | Neutron diffraction | 1.8 | 2005-01-26 | |||
| 57 | 133D|1|A+ 133D|1|B | DNA (5'-D(*CP*GP*CP*GP*(C34)P*G)-3') | THE CRYSTAL STRUCTURE OF N4-METHYLCYTOSINE.GUANOSIN BASE-PAIRS IN THE SYNTHETIC HEXANUCLEOTIDE D(CGCGM(4)CG) | X-ray diffraction | 1.8 | 1994-01-15 | ||||
| 58 | 1D24|1|A+ 1D24|1|B | DNA (5'-D(*CP*GP*CP*(6OG)P*CP*G)-3') | CRYSTAL AND MOLECULAR STRUCTURE OF A DNA DUPLEX CONTAINING THE CARCINOGENIC LESION O6-METHYLGUANINE | X-ray diffraction | 1.9 | 1992-04-07 | ||||
| 59 | 390D|1|A+ 390D|1|B | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-ray diffraction | 2 | 1998-05-05 | ||||
| 60 | 390D|1|C | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-ray diffraction | 2 | 1998-05-05 | ||||
| 61 | 239D|1|A+ 239D|1|B | DNA (5'-D(*CP*CP*CP*GP*GP*G)-3') | POLYMORPHISM IN LEFT HANDED DNA: THE CRYSTAL STRUCTURE OF D(CCCGGG)2 | X-ray diffraction | 2.05 | 1996-11-08 | ||||
| 62 | 1DA1|1|A+ 1DA1|1|B | DNA (5'-D(*(BRU)P*GP*CP*GP*CP*G)-3') | STRUCTURAL CHARACTERISATION OF THE BROMOURACIL-GUANINE BASE PAIR MISMATCH IN A Z-DNA FRAGMENT | X-ray diffraction | 2.25 | 1993-07-15 | ||||
| 63 | 180D|1|A+ 180D|1|B | DNA (5'-D(*CP*GP*CP*AP*CP*G)-3'), DNA (5'-D(*CP*GP*TP*GP*CP*G)-3') | SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) | X-ray diffraction | 2.5 | 1995-07-19 | ||||
| 64 | 391D|1|A+ 391D|1|B | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-ray diffraction | 2.75 | 1998-05-05 | ||||
| 65 | 391D|1|C+ 391D|1|D | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-ray diffraction | 2.75 | 1998-05-05 | ||||
| 66 | 391D|1|E+ 391D|1|F | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-ray diffraction | 2.75 | 1998-05-05 | ||||
| 67 | 392D|1|A+ 392D|1|B | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-ray diffraction | 3 | 1998-05-05 | ||||
| 68 | 392D|1|C+ 392D|1|D | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-ray diffraction | 3 | 1998-05-05 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 239D|1|A+239D|1|B | POLYMORPHISM IN LEFT HANDED DNA: THE CRYSTAL STRUCTURE OF D(CCCGGG)2 | X-RAY DIFFRACTION | 2.05 | 6 | Z-form double helix,double helix,structure | |
| 2 | 210D|1|A | CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A)CG] AND ITS PLATINATED DERIVATIVE | X-RAY DIFFRACTION | 1.35 | 6 | Z-form double helix,double helix,structure | |
| 3 | 390D|1|A+390D|1|B | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-RAY DIFFRACTION | 2 | 6 | Z-form double helix,double helix,structure | |
| 4 | 1DA1|1|A+1DA1|1|B | STRUCTURAL CHARACTERISATION OF THE BROMOURACIL-GUANINE BASE PAIR MISMATCH IN A Z-DNA FRAGMENT | X-RAY DIFFRACTION | 2.25 | 6 | Z-form double helix,double helix,structure | |
| 5 | 145D|1|A+145D|1|B | Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) | X-RAY DIFFRACTION | 1.25 | 6 | Z-form double helix,double helix,structure | |
| 6 | 1LJX|1|A+1LJX|1|B | THE STRUCTURE OF D(TPGPCPGPCPA)2 AT 293K: COMPARISON OF THE EFFECT OF SEQUENCE AND TEMPERATURE | X-RAY DIFFRACTION | 1.64 | 6 | Z-form double helix,double helix,structure | |
| 7 | 362D|1|A+362D|1|B | THE STRUCTURE OF D(TGCGCA)2 AND A COMPARISON TO OTHER Z-DNA HEXAMERS | X-RAY DIFFRACTION | 1.3 | 6 | Z-form double helix,double helix,structure | |
| 8 | 400D|1|A+400D|1|B | THE INTRINSIC STRUCTURE AND STABILITY OF OUT-OF-ALTERNATION BASE PAIRS IN Z-DNA | X-RAY DIFFRACTION | 1.65 | 6 | Z-form double helix,double helix,structure | |
| 9 | 1D24|1|A+1D24|1|B | CRYSTAL AND MOLECULAR STRUCTURE OF A DNA DUPLEX CONTAINING THE CARCINOGENIC LESION O6-METHYLGUANINE | X-RAY DIFFRACTION | 1.9 | 6 | Z-form double helix,double helix,structure | |
| 10 | 131D|1|A+131D|1|B | THE LOW-TEMPERATURE CRYSTAL STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA REVEALS BINDING OF A SPERMINE MOLECULE IN THE MINOR GROOVE | X-RAY DIFFRACTION | 1 | 6 | Z-form double helix,double helix,structure | |
| 11 | 1I0T|1|A+1I0T|1|B | 0.6 A STRUCTURE OF Z-DNA CGCGCG | X-RAY DIFFRACTION | 0.6 | 6 | Z-form double helix,double helix,structure | |
| 12 | 2F8W|1|A+2F8W|1|B | Crystal structure of d(CACGTG)2 | X-RAY DIFFRACTION | 1.2 | 6 | Z-form double helix,double helix,structure | |
| 13 | 1WOE|1|A+1WOE|1|B | X-ray structure of a Z-DNA hexamer d(CGCGCG) | X-RAY DIFFRACTION | 1.5 | 6 | Z-form double helix,double helix,structure | |
| 14 | 1V9G|1|A+1V9G|1|B | Neutron Crystallographic analysis of the Z-DNA hexamer CGCGCG | NEUTRON DIFFRACTION | 1.8 | 6 | Z-form double helix,double helix,structure | |
| 15 | 3FQ5|1|C+3FQ5|1|D | Crystal Structure of d(CACGCG).d(CGCGTG) with 10mM MnCl2 | X-RAY DIFFRACTION | 2.8 | 6 | Z-form double helix,double helix,structure | |
| 16 | 1D48|1|A+1D48|1|B | STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA (MAGNESIUM FREE) AT 1 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 1 | 6 | Z-form double helix,double helix,structure | |
| 17 | 1D41|1|B | STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG) | X-RAY DIFFRACTION | 1.3 | 6 | Z-form double helix,double helix,structure | |
| 18 | 1D40|1|B | BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2 | X-RAY DIFFRACTION | 1.3 | 6 | Z-form double helix,double helix,structure | |
| 19 | 1DN5|1|B | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-RAY DIFFRACTION | 1.4 | 6 | Z-form double helix,double helix,structure | |
| 20 | 1DN4|1|B | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-RAY DIFFRACTION | 1.6 | 6 | Z-form double helix,double helix,structure | |
| 21 | 391D|1|C+391D|1|D | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-RAY DIFFRACTION | 2.75 | 6 | Z-form double helix,double helix,structure | |
| 22 | 1DNF|1|A+1DNF|1|B | EFFECTS OF 5-FLUOROURACIL/GUANINE WOBBLE BASE PAIRS IN Z-DNA. MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGFG) | X-RAY DIFFRACTION | 1.5 | 6 | Z-form double helix,double helix,structure | |
| 23 | 417D|1|A+417D|1|B | A THYMINE-LIKE BASE ANALOGUE FORMS WOBBLE PAIRS WITH ADENINE | X-RAY DIFFRACTION | 1.5 | 6 | Z-form double helix,double helix,structure | |
| 24 | 391D|1|A+391D|1|B | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-RAY DIFFRACTION | 2.75 | 6 | Z-form double helix,double helix,structure | |
| 25 | 1D76|1|A+1D76|1|B | CRYSTAL AND MOLECULAR STRUCTURE OF A DNA FRAGMENT CONTAINING A 2-AMINO ADENINE MODIFICATION: THE RELATIONSHIP BETWEEN CONFORMATION, PACKING, AND HYDRATION IN Z-DNA HEXAMERS | X-RAY DIFFRACTION | 1.3 | 6 | Z-form double helix,double helix,structure | |
| 26 | 1DJ6|1|A+1DJ6|1|B | COMPLEX OF A Z-DNA HEXAMER, D(CG)3, WITH SYNTHETIC POLYAMINE AT ROOM TEMPERATURE | X-RAY DIFFRACTION | 1 | 6 | Z-form double helix,double helix,structure | |
| 27 | 1ICK|1|A+1ICK|1|B | LEFT-HANDED Z-DNA HEXAMER DUPLEX D(CGCGCG)2 | X-RAY DIFFRACTION | 0.95 | 6 | Z-form double helix,double helix,structure | |
| 28 | 2DCG|1|A+2DCG|1|B | MOLECULAR STRUCTURE OF A LEFT-HANDED DOUBLE HELICAL DNA FRAGMENT AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 0.9 | 6 | Z-form double helix,double helix,structure | |
| 29 | 292D|1|A+292D|1|B | INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE:THE CRYSTAL STRUCTURE OF THE D(CG)3 AND N-(2-AMINOETHYL)-1,4-DIAMINOBUTANE COMPLEX | X-RAY DIFFRACTION | 1 | 6 | Z-form double helix,double helix,structure | |
| 30 | 293D|1|A+293D|1|B | INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE-2: THE CRYSTAL STRUCTURE OF THE D(CG)3 AND SPERMIDINE COMPLEX | X-RAY DIFFRACTION | 1 | 6 | Z-form double helix,double helix,structure | |
| 31 | 336D|1|A+336D|1|B | INTERACTION BETWEEN LEFT-HANDED Z-DNA AND POLYAMINE-3 THE CRYSTAL STRUCTURE OF THE D(CG)3 AND THERMOSPERMINE COMPLEX | X-RAY DIFFRACTION | 1 | 6 | Z-form double helix,double helix,structure | |
| 32 | 1D39|1|A+1D39|1|B | COVALENT MODIFICATION OF GUANINE BASES IN DOUBLE STRANDED DNA: THE 1.2 ANGSTROMS Z-DNA STRUCTURE OF D(CGCGCG) IN THE PRESENCE OF CUCL2 | X-RAY DIFFRACTION | 1.2 | 6 | Z-form double helix,double helix,structure | |
| 33 | 1DCG|1|A+1DCG|1|B | THE MOLECULAR STRUCTURE OF THE LEFT-HANDED Z-DNA DOUBLE HELIX AT 1.0 ANGSTROM ATOMIC RESOLUTION. GEOMETRY, CONFORMATION, AND IONIC INTERACTIONS OF D(CGCGCG) | X-RAY DIFFRACTION | 1 | 6 | Z-form double helix,double helix,structure | |
| 34 | 242D|1|A+242D|1|B | MAD PHASING STRATEGIES EXPLORED WITH A BROMINATED OLIGONUCLEOTIDE CRYSTAL AT 1.65 A RESOLUTION. | X-RAY DIFFRACTION | 1.65 | 6 | Z-form double helix,double helix,structure | |
| 35 | 1D41|1|A | STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG) | X-RAY DIFFRACTION | 1.3 | 6 | Z-form double helix,double helix,structure | |
| 36 | 351D|1|A+351D|1|B | X-RAY CRYSTAL STRUCTURES OF THE HEXAMER DCACGCG: CRYSTALS GROWN IN THE PRESENCE OF RUTHENIUM (II) HEXAMMINE CHLORIDE | X-RAY DIFFRACTION | 1.64 | 6 | Z-form double helix,double helix,structure | |
| 37 | 181D|1|A+181D|1|B | SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) | X-RAY DIFFRACTION | 1.6 | 6 | Z-form double helix,double helix,structure | |
| 38 | 3G2A|1|A+3G2A|1|B | Crystal structure of d(CACGCG).d(CGCGTG) grown in presence of 1mM MnCl2 | X-RAY DIFFRACTION | 2 | 6 | Z-form double helix,double helix,structure | |
| 39 | 1DN5|1|A | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-RAY DIFFRACTION | 1.4 | 6 | Z-form double helix,double helix,structure | |
| 40 | 1DN4|1|A | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-RAY DIFFRACTION | 1.6 | 6 | Z-form double helix,double helix,structure | |
| 41 | 1XAM|1|A+1XAM|1|B | Cobalt hexammine induced tautameric shift in Z-DNA: structure of d(CGCGCA).d(TGCGCG) in two crystal forms. | X-RAY DIFFRACTION | 1.86 | 6 | Z-form double helix,double helix,structure | |
| 42 | 133D|1|A+133D|1|B | THE CRYSTAL STRUCTURE OF N4-METHYLCYTOSINE.GUANOSIN BASE-PAIRS IN THE SYNTHETIC HEXANUCLEOTIDE D(CGCGM(4)CG) | X-RAY DIFFRACTION | 1.8 | 6 | Z-form double helix,double helix,structure | |
| 43 | 2HTO|1|A+2HTO|1|B | Ruthenium hexammine ion interactions with Z-DNA | X-RAY DIFFRACTION | 1.54 | 6 | Z-form double helix,double helix,structure | |
| 44 | 1XA2|1|A+1XA2|1|B | Cobalt hexammine induced tautomeric shift in Z-DNA: the structure of d(CGCGCA).d(TGCGCG) in two crystal forms | X-RAY DIFFRACTION | 1.71 | 6 | Z-form double helix,double helix,structure | |
| 45 | 392D|1|C+392D|1|D | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-RAY DIFFRACTION | 3 | 6 | Z-form double helix,double helix,structure | |
| 46 | 392D|1|A+392D|1|B | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-RAY DIFFRACTION | 3 | 6 | Z-form double helix,double helix,structure | |
| 47 | 1DA2|1|A+1DA2|1|B | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO4CG): N4-METHOXYCYTOSINE/GUANINE BASE-PAIRS IN Z-DNA | X-RAY DIFFRACTION | 1.7 | 6 | Z-form double helix,double helix,structure | |
| 48 | 223D|1|A+223D|1|B | DIRECT OBSERVATION OF TWO BASE-PAIRING MODES OF A CYTOSINE-THYMINE ANALOGUE WITH GUANINE IN A DNA Z-FORM DUPLEX: SIGNIFICANCE FOR BASE ANALOGUE MUTAGENESIS | X-RAY DIFFRACTION | 1.7 | 6 | Z-form double helix,double helix,structure | |
| 49 | 145D|1|C+145D|1|D | Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) | X-RAY DIFFRACTION | 1.25 | 6 | Z-form double helix,double helix,structure | |
| 50 | 1D40|1|A | BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2 | X-RAY DIFFRACTION | 1.3 | 6 | Z-form double helix,double helix,structure | |
| 51 | 1OMK|1|A+1OMK|1|B | The Crystal Structure of d(CACG(5IU)G) | X-RAY DIFFRACTION | 1.3 | 6 | Z-form double helix,double helix,structure | |
| 52 | 2IE1|1|A+2IE1|1|B | Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography | X-RAY DIFFRACTION | 1.6 | 6 | Z-form double helix,double helix,structure | |
| 53 | 391D|1|E+391D|1|F | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-RAY DIFFRACTION | 2.75 | 6 | Z-form double helix,double helix,structure | |
| 54 | 2OBZ|1|A+2OBZ|1|B | Crystal structure of the The brominated Z-DNA duplex d(CGCG[BrU]G) | X-RAY DIFFRACTION | 1.1 | 6 | Z-form double helix,double helix,structure | |
| 55 | 390D|1|C | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-RAY DIFFRACTION | 2 | 6 | Z-form double helix,double helix,structure | |
| 56 | 3F8O|1|A+3F8O|1|B | Structure of d(CACGCG).d(CGCGTG) with low concentration of PdCl2 | X-RAY DIFFRACTION | 1.72 | 6 | Z-form double helix,double helix,structure | |
| 57 | 3GCY|1|A+3GCY|1|B | Crystal studies of d(CACGCG).d(CGCGTG) grown in presence of calcium chloride | X-RAY DIFFRACTION | 1.8 | 6 | Z-form double helix,double helix,structure | |
| 58 | 3GDA|1|A+3GDA|1|B | Crystal study of d(CACGCG).d(CGCGTG) grwon in presence of stannous chloride | X-RAY DIFFRACTION | 1.88 | 6 | Z-form double helix,double helix,structure | |
| 59 | 1VRO|1|A+1VRO|1|B | Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates for MAD Phasing of a DNA Structure | X-RAY DIFFRACTION | 1.1 | 6 | Z-form double helix,double helix,structure | |
| 60 | 3QBA|1|B | Reintroducing Electrostatics into Macromolecular Crystallographic Refinement: Z-DNA (X-ray) | X-RAY DIFFRACTION | 1.53 | 32 | Z-form double helix,double helix,structure | |
| 61 | 3FQB|1|A+3FQB|1|B | Barium interactions with Z-DNA | X-RAY DIFFRACTION | 1.67 | 6 | Z-form double helix,double helix,structure | |
| 62 | 2ELG|1|A+2ELG|1|B | The rare crystallographic structure of d(CGCGCG)2: The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)2 at 10 degree celsius | X-RAY DIFFRACTION | 1 | 6 | Z-form double helix,double helix,structure | |
| 63 | 2HTT|1|A+2HTT|1|B | Ruthenium Hexammine ion interactions with Z-DNA | X-RAY DIFFRACTION | 2.6 | 6 | Z-form double helix,double helix,structure | |
| 64 | 3FQ5|1|A+3FQ5|1|B | Crystal Structure of d(CACGCG).d(CGCGTG) with 10mM MnCl2 | X-RAY DIFFRACTION | 2.8 | 6 | Z-form double helix,double helix,structure | |
| 65 | 3E9W|1|A+3E9W|1|B | X-Ray Crystal Structure of the hexamer DCACACG:Crystal grown in the presence of cobalt(III)hexammine Chloride. | X-RAY DIFFRACTION | 2.05 | 6 | Z-form double helix,double helix,structure | |
| 66 | 180D|1|A+180D|1|B | SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) | X-RAY DIFFRACTION | 2.5 | 6 | Z-form double helix,double helix,structure | |
| 67 | 211D|1|A | THE CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A) CG] AND ITS PLATINATED DERIVATIVE | X-RAY DIFFRACTION | 1.6 | 6 | Z-form double helix,double helix,structure | |
| 68 | 3G2R|1|A | Crystal structure of d(CACGCG).d(CGCGTG) cocrystallized with MnCl2 | X-RAY DIFFRACTION | 2.15 | 6 | Z-form double helix,double helix,structure |
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