Equivalence class DNA_4.0_30372.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3NZ7|1|A (rep) | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine ligand containing bis-3-fluoropyrrolidine end side chains | X-ray diffraction | 1.1 | 2010-08-25 | ||||
| 2 | 3NYP|1|A | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine ligand containing bis-3-fluoropyrrolidine end side chains | X-ray diffraction | 1.179 | 2010-08-25 | ||||
| 3 | 1L1H|1|A | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystal Structure of the Quadruplex DNA-Drug Complex | X-ray diffraction | 1.75 | 2003-02-11 | ||||
| 4 | 3ERU|1|A | 5'-D(*DGP*DGP*DGP*DGP*DTP*DTP*DTP*DTP*DGP*DGP*DGP*DG)-3' | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6045 | X-ray diffraction | 2 | 2008-10-14 | ||||
| 5 | 3ES0|1|A | 5'-D(*DGP*DGP*DGP*DGP*DTP*DTP*DTP*DTP*DGP*DGP*DGP*DG)-3' | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6048 | X-ray diffraction | 2.2 | 2008-10-14 | ||||
| 6 | 3EUM|1|A | 5'-D(*DGP*DGP*DGP*DGP*DTP*DTP*DTP*DTP*DGP*DGP*DGP*DG)-3' | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6066 | X-ray diffraction | 1.78 | 2008-10-21 | ||||
| 7 | 3EUI|1|A | 5'-D(*DGP*DGP*DGP*DGP*DTP*DTP*DTP*DTP*DGP*DGP*DGP*DG)-3' | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6042 in a large unit cell | X-ray diffraction | 2.2 | 2008-12-02 | ||||
| 8 | 3EUI|1|C | 5'-D(*DGP*DGP*DGP*DGP*DTP*DTP*DTP*DTP*DGP*DGP*DGP*DG)-3' | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6042 in a large unit cell | X-ray diffraction | 2.2 | 2008-12-02 | ||||
| 9 | 3EM2|1|A | 5'-D(*DGP*DGP*DGP*DGP*DTP*DTP*DTP*DTP*DGP*DGP*DGP*DG)-3' | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6038 | X-ray diffraction | 2.3 | 2008-10-14 | ||||
| 10 | 3ET8|1|A | 5'-D(*DGP*DGP*DGP*DGP*DTP*DTP*DTP*DTP*DGP*DGP*DGP*DG)-3' | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6054 | X-ray diffraction | 2.45 | 2008-10-14 | ||||
| 11 | 3EQW|1|A | 5'-D(*DGP*DGP*DGP*DGP*DTP*DTP*DTP*DTP*DGP*DGP*DGP*DG)-3' | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6042 in small unit cell | X-ray diffraction | 2.2 | 2008-10-14 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3EUM|1|A | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6066 | X-RAY DIFFRACTION | 1.78 | 12 | function,quadruplex,structure,telomeric DNA | |
| 2 | 3ET8|1|A | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6054 | X-RAY DIFFRACTION | 2.45 | 12 | function,quadruplex,structure,telomeric DNA | |
| 3 | 3ES0|1|A | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6048 | X-RAY DIFFRACTION | 2.2 | 12 | function,quadruplex,structure,telomeric DNA | |
| 4 | 3ERU|1|A | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6045 | X-RAY DIFFRACTION | 2 | 12 | function,quadruplex,structure,telomeric DNA | |
| 5 | 1L1H|1|A | Crystal Structure of the Quadruplex DNA-Drug Complex | X-RAY DIFFRACTION | 1.75 | 12 | function,quadruplex,structure,telomeric DNA | |
| 6 | 3NZ7|1|A | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine ligand containing bis-3-fluoropyrrolidine end side chains | X-RAY DIFFRACTION | 1.1 | 12 | function,quadruplex,structure,telomeric DNA | |
| 7 | 3EM2|1|A | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6038 | X-RAY DIFFRACTION | 2.3 | 12 | function,quadruplex,structure,telomeric DNA | |
| 8 | 3EQW|1|A | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6042 in small unit cell | X-RAY DIFFRACTION | 2.2 | 12 | function,quadruplex,structure,telomeric DNA | |
| 9 | 3NYP|1|A | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine ligand containing bis-3-fluoropyrrolidine end side chains | X-RAY DIFFRACTION | 1.179 | 12 | function,quadruplex,structure,telomeric DNA | |
| 10 | 3EUI|1|C | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6042 in a large unit cell | X-RAY DIFFRACTION | 2.2 | 12 | function,quadruplex,structure,telomeric DNA | |
| 11 | 3EUI|1|A | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6042 in a large unit cell | X-RAY DIFFRACTION | 2.2 | 12 | function,quadruplex,structure,telomeric DNA |
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