Equivalence class DNA_4.0_29889.1 Current
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1PJJ|1|D+ 1PJJ|1|E (rep) | DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3') | Complex between the Lactococcus lactis Fpg and an abasic site containing DNA. | X-ray diffraction | 1.9 | 2004-06-08 | ||||
2 | 3C58|1|B+ 3C58|1|C | DNA (5'-D(*DCP*DTP*DCP*DTP*DTP*DTP*(SOS)P*DTP*DTP*DTP*DCP*DTP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DAP*DGP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DGP*DA)-3') | Crystal structure of a complex between the wild-type lactococcus lactis Fpg (MutM) and a N7-Benzyl-Fapy-dG containing DNA | X-ray diffraction | 1.9 | 2008-12-16 | ||||
3 | 1PJI|1|D+ 1PJI|1|E | DNA (5'-D(*CP*TP*CP*TP*TP*TP*(PDI)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3') | Crystal structure of wild type Lactococcus lactis FPG complexed to a 1,3 propanediol containing DNA | X-ray diffraction | 1.9 | 2004-08-03 | ||||
4 | 1PM5|1|D+ 1PM5|1|E | DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3') | Crystal structure of wild type Lactococcus lactis Fpg complexed to a tetrahydrofuran containing DNA | X-ray diffraction | 1.95 | 2004-07-27 | ||||
5 | 1TDZ|1|B+ 1TDZ|1|C | 5'-D(*CP*TP*CP*TP*TP*TP*(FOX)P*TP*TP*TP*CP*TP*CP*G)-3', 5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3' | Crystal Structure Complex Between the Lactococcus Lactis FPG (Mutm) and a FAPY-dG Containing DNA | X-ray diffraction | 1.8 | 2004-09-07 | ||||
6 | 1NNJ|1|D+ 1NNJ|1|E | 5'-D(*CP*TP*CP*TP*TP*TP*(PDI)P*TP*TP*TP*CP*TP*CP*G)-3', 5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3' | Crystal structure Complex between the Lactococcus lactis Fpg and an abasic site containing DNA | X-ray diffraction | 1.9 | 2003-02-11 | ||||
7 | 1XC8|1|B+ 1XC8|1|C | 5'-D(*CP*TP*CP*TP*TP*TP*(FOX)P*TP*TP*TP*CP*TP*CP*G)-3', 5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3' | CRYSTAL STRUCTURE COMPLEX BETWEEN THE WILD-TYPE LACTOCOCCUS LACTIS FPG (MUTM) AND A FAPY-DG CONTAINING DNA | X-ray diffraction | 1.95 | 2005-09-06 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 1TDZ|1|B+1TDZ|1|C | Crystal Structure Complex Between the Lactococcus Lactis FPG (Mutm) and a FAPY-dG Containing DNA | X-RAY DIFFRACTION | 1.8 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase |
2 | 1XC8|1|B+1XC8|1|C | CRYSTAL STRUCTURE COMPLEX BETWEEN THE WILD-TYPE LACTOCOCCUS LACTIS FPG (MUTM) AND A FAPY-DG CONTAINING DNA | X-RAY DIFFRACTION | 1.95 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase |
3 | 1PJI|1|D+1PJI|1|E | Crystal structure of wild type Lactococcus lactis FPG complexed to a 1,3 propanediol containing DNA | X-RAY DIFFRACTION | 1.9 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase |
4 | 1NNJ|1|D+1NNJ|1|E | Crystal structure Complex between the Lactococcus lactis Fpg and an abasic site containing DNA | X-RAY DIFFRACTION | 1.9 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase |
5 | 1PJJ|1|D+1PJJ|1|E | Complex between the Lactococcus lactis Fpg and an abasic site containing DNA. | X-RAY DIFFRACTION | 1.9 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase |
6 | 1PM5|1|D+1PM5|1|E | Crystal structure of wild type Lactococcus lactis Fpg complexed to a tetrahydrofuran containing DNA | X-RAY DIFFRACTION | 1.95 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase |
7 | 3C58|1|B+3C58|1|C | Crystal structure of a complex between the wild-type lactococcus lactis Fpg (MutM) and a N7-Benzyl-Fapy-dG containing DNA | X-RAY DIFFRACTION | 1.9 | 14 | enzyme,hydrolase |
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