Equivalence class DNA_4.0_25408.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1UE4|1|A (rep) | 5'-D(*GP*CP*GP*AP*AP*AP*GP*C)-3' | Crystal structure of d(GCGAAAGC) | X-ray diffraction | 1.65 | 2004-03-09 | ||||
| 2 | 1UE3|1|A | 5'-D(*GP*CP*GP*AP*AP*AP*GP*C)-3' | Crystal structure of d(GCGAAAGC) containing hexaamminecobalt | X-ray diffraction | 2.15 | 2004-01-13 | ||||
| 3 | 2DZ7|1|A | DNA (5'-D(*DGP*DCP*DGP*DAP*DAP*DAP*DGP*DC)-3') | DNA Octaplex Formation with an I-Motif of A-Quartets: The Revised Crystal Structure of d(GCGAAAGC) | X-ray diffraction | 1.6 | 2007-08-14 | ||||
| 4 | 1V3O|1|A+ 1V3O|1|B | 5'-D(*GP*(C38)P*GP*AP*GP*AP*GP*C)-3' | Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex | X-ray diffraction | 1.7 | 2004-06-08 | ||||
| 5 | 1UHY|1|A | 5'-D(*GP*(CBR)P*GP*AP*TP*AP*GP*C)-3' | Crystal structure of d(GCGATAGC): the base-intercalated duplex | X-ray diffraction | 1.7 | 2004-02-03 | ||||
| 6 | 1V3N|1|A+ 1V3N|1|B | 5'-D(*GP*(CBR)P*GP*AP*GP*AP*GP*C)-3' | Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex | X-ray diffraction | 1.8 | 2004-06-08 | ||||
| 7 | 1UHX|1|A | 5'-D(*GP*(CBR)P*GP*AP*GP*AP*GP*C)-3' | Crystal structure of d(GCGAGAGC): the base-intercalated duplex | X-ray diffraction | 2 | 2004-02-03 | ||||
| 8 | 1V3P|1|A+ 1V3P|1|B | 5'-D(*GP*(C38)P*GP*AP*GP*AP*GP*C)-3' | Crystal structure of d(GCGAGAGC): the DNA octaplex structure with I-motif of G-quartet | X-ray diffraction | 2.3 | 2004-06-08 | ||||
| 9 | 2FZA|1|A+ 2FZA|1|B | 5'-D(*GP*(CBR)P*GP*GP*GP*AP*GP*C)-3' | Crystal structure of d(GCGGGAGC): the base-intercalated duplex | X-ray diffraction | 3.6 | 2007-01-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1V3P|1|A+1V3P|1|B | Crystal structure of d(GCGAGAGC): the DNA octaplex structure with I-motif of G-quartet | X-RAY DIFFRACTION | 2.3 | 8 | I-motif,parallel helix,quadruplex,structure | |
| 2 | 1UE4|1|A | Crystal structure of d(GCGAAAGC) | X-RAY DIFFRACTION | 1.65 | 8 | NAKB_NA_annotation | NAKB_protein_annotation |
| 3 | 2DZ7|1|A | DNA Octaplex Formation with an I-Motif of A-Quartets: The Revised Crystal Structure of d(GCGAAAGC) | X-RAY DIFFRACTION | 1.6 | 8 | I-motif,parallel helix,quadruplex,structure | |
| 4 | 1UE3|1|A | Crystal structure of d(GCGAAAGC) containing hexaamminecobalt | X-RAY DIFFRACTION | 2.15 | 8 | NAKB_NA_annotation | NAKB_protein_annotation |
| 5 | 1UHX|1|A | Crystal structure of d(GCGAGAGC): the base-intercalated duplex | X-RAY DIFFRACTION | 2 | 8 | NAKB_NA_annotation | NAKB_protein_annotation |
| 6 | 1UHY|1|A | Crystal structure of d(GCGATAGC): the base-intercalated duplex | X-RAY DIFFRACTION | 1.7 | 8 | NAKB_NA_annotation | NAKB_protein_annotation |
| 7 | 2FZA|1|A+2FZA|1|B | Crystal structure of d(GCGGGAGC): the base-intercalated duplex | X-RAY DIFFRACTION | 3.6 | 8 | I-motif,parallel helix,structure | |
| 8 | 1V3N|1|A+1V3N|1|B | Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex | X-RAY DIFFRACTION | 1.8 | 8 | I-motif,parallel helix,structure | |
| 9 | 1V3O|1|A+1V3O|1|B | Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex | X-RAY DIFFRACTION | 1.7 | 8 | I-motif,parallel helix,structure |
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