Equivalence class DNA_4.0_25232.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 479D|1|B (rep) | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | CRYSTAL STRUCTURE A DNA:RNA HYBRID DUPLEX, A DYNAMIC MODEL FOR RNASE H RECOGNITION | X-ray diffraction | 1.9 | 2000-05-15 | ||||
| 2 | 2DQP|1|B | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | Structural analyses of DNA:DNA and RNA:DNA duplexes containing 5-(N-aminohexyl)carbamoyl modified uridines | X-ray diffraction | 2.1 | 2007-04-17 | ||||
| 3 | 2DQO|1|B | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine | X-ray diffraction | 2.3 | 2007-04-17 | ||||
| 4 | 2DQQ|1|B | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine | X-ray diffraction | 2 | 2007-04-17 |
Release history
| Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 0.13 | 0.14 | 0.15 | 0.16 | 0.17 | 0.18 | 0.19 | 0.20 | 0.21 | 0.22 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2011-02-05 | 2011-02-12 | 2011-02-16 | 2011-02-19 | 2011-02-26 | 2011-03-05 | 2011-03-12 | 2011-03-19 | 2011-03-26 | 2011-04-02 | 2011-04-09 | 2011-04-11 | 2011-04-16 | 2011-04-23 | 2011-04-30 | 2011-05-07 | 2011-05-14 | 2011-05-21 | 2011-05-28 | 2011-06-04 | 2011-06-11 | 2011-06-18 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2DQQ|1|B | Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine | X-RAY DIFFRACTION | 2 | 9 | A-form double helix,double helix,structure | |
| 2 | 2DQP|1|B | Structural analyses of DNA:DNA and RNA:DNA duplexes containing 5-(N-aminohexyl)carbamoyl modified uridines | X-RAY DIFFRACTION | 2.1 | 9 | A-form double helix,double helix,structure | |
| 3 | 2DQO|1|B | Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine | X-RAY DIFFRACTION | 2.3 | 9 | A-form double helix,double helix,structure | |
| 4 | 479D|1|B | CRYSTAL STRUCTURE A DNA:RNA HYBRID DUPLEX, A DYNAMIC MODEL FOR RNASE H RECOGNITION | X-RAY DIFFRACTION | 1.9 | 9 | A-form double helix,double helix,structure |
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