Equivalence class DNA_4.0_24493.1 Current
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2AVH|1|A (rep) | 5'-D(*GP*GP*GP*GP*TP*TP*TP*GP*GP*GP*G)-3' | G4T3G4 dimeric quadruplex structure | X-ray diffraction | 1.5 | 2006-03-28 | ||||
2 | 2AVJ|1|A | 5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*GP*GP*GP*G)-3' | G4(Br)UTTG4 dimeric quadruplex | X-ray diffraction | 2.39 | 2006-03-28 | ||||
3 | 2AVJ|1|D+ 2AVJ|1|C | 5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*GP*GP*GP*G)-3' | G4(Br)UTTG4 dimeric quadruplex | X-ray diffraction | 2.39 | 2006-03-28 | ||||
4 | 2AVJ|1|B | 5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*GP*GP*GP*G)-3' | G4(Br)UTTG4 dimeric quadruplex | X-ray diffraction | 2.39 | 2006-03-28 | ||||
5 | 2AVJ|1|E+ 2AVJ|1|F | 5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*GP*GP*GP*G)-3' | G4(Br)UTTG4 dimeric quadruplex | X-ray diffraction | 2.39 | 2006-03-28 |
Release history
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 2AVH|1|A | G4T3G4 dimeric quadruplex structure | X-RAY DIFFRACTION | 1.5 | 11 | quadruplex,structure | |
2 | 2AVJ|1|B | G4(Br)UTTG4 dimeric quadruplex | X-RAY DIFFRACTION | 2.39 | 11 | quadruplex,structure | |
3 | 2AVJ|1|A | G4(Br)UTTG4 dimeric quadruplex | X-RAY DIFFRACTION | 2.39 | 11 | quadruplex,structure | |
4 | 2AVJ|1|D+2AVJ|1|C | G4(Br)UTTG4 dimeric quadruplex | X-RAY DIFFRACTION | 2.39 | 11 | quadruplex,structure | |
5 | 2AVJ|1|E+2AVJ|1|F | G4(Br)UTTG4 dimeric quadruplex | X-RAY DIFFRACTION | 2.39 | 11 | quadruplex,structure |
Coloring options: