Equivalence class DNA_4.0_24264.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3JXB|1|A+ 3JXB|1|B (rep) | 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*A)-3', 5'-D(*TP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3' | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C | X-ray diffraction | 1.67 | 2010-01-19 | ||||
| 2 | 2R1J|1|A+ 2R1J|1|B | 5'-D(*DTP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DG)-3', 5'-D(*DCP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DA)-3' | Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9T | X-ray diffraction | 1.53 | 2008-04-29 | ||||
| 3 | 3JXC|1|A+ 3JXC|1|B | 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3' | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+ | X-ray diffraction | 1.9 | 2010-01-19 | ||||
| 4 | 3JXD|1|A+ 3JXD|1|B | 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3' | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+ | X-ray diffraction | 2.1 | 2010-01-19 | ||||
| 5 | 2HAN|1|C+ 2HAN|1|D | 5'-D(*CP*AP*AP*GP*GP*GP*TP*TP*CP*AP*AP*TP*GP*CP*AP*CP*TP*TP*GP*T)-3', 5'-D(*GP*AP*CP*AP*AP*GP*TP*GP*CP*AP*TP*TP*GP*AP*AP*CP*CP*CP*TP*T)-3' | Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoter | X-ray diffraction | 1.95 | 2007-05-22 | ||||
| 6 | 3RAX|1|E | DNA (5'-D(*CP*CP*TP*AP*AP*CP*(MG1)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesion | X-ray diffraction | 1.891 | 2011-06-15 | ||||
| 7 | 3RAX|1|J | DNA (5'-D(*CP*CP*TP*AP*AP*CP*(MG1)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesion | X-ray diffraction | 1.891 | 2011-06-15 | ||||
| 8 | 3MGV|1|F+ 3MGV|1|H+ 3MGV|1|E+ 3MGV|1|G | DNA (5'-D(*CP*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3') | Cre recombinase-DNA transition state | X-ray diffraction | 2.29 | 2010-05-26 | ||||
| 9 | 3MGV|1|K+ 3MGV|1|M+ 3MGV|1|I+ 3MGV|1|L | DNA (5'-D(*CP*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3') | Cre recombinase-DNA transition state | X-ray diffraction | 2.29 | 2010-05-26 | ||||
| 10 | 2VY1|1|W | 5'-D(*TP*TP*AP*CP*GP*GP*AP*CP*CP*AP *CP*TP*GP*GP*TP*CP*CP*TP*TP*CP)-3' | Arabidopsis thaliana | Structure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AP1 promoter | X-ray diffraction | 2.104 | 2008-09-23 | |||
| 11 | 3RAQ|1|E | DNA (5'-D(*C*CP*TP*AP*AP*CP*(MG1)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesion | X-ray diffraction | 2.25 | 2011-06-15 | ||||
| 12 | 3RAQ|1|J | DNA (5'-D(*C*CP*TP*AP*AP*CP*(MG1)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesion | X-ray diffraction | 2.25 | 2011-06-15 | ||||
| 13 | 1ZG5|1|C+ 1ZG5|1|D | 5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3' | NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site | X-ray diffraction | 2.3 | 2005-11-22 | ||||
| 14 | 1ZG5|1|G+ 1ZG5|1|H | 5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3' | NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site | X-ray diffraction | 2.3 | 2005-11-22 | ||||
| 15 | 2VY2|1|W | 5'-D(*AP*TP*TP*TP*AP*AP*TP*CP*CP*AP *AP*TP*GP*GP*TP*TP*AP*CP*AP*A)-3' | Arabidopsis thaliana | Structure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AG-I promoter | X-ray diffraction | 2.3 | 2008-09-23 | |||
| 16 | 1GA5|1|C+ 1GA5|1|D | 5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*(5IT)P*G)-3' | CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT | X-ray diffraction | 2.4 | 2001-11-16 | ||||
| 17 | 1GA5|1|G+ 1GA5|1|H | 5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*(5IT)P*G)-3' | CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT | X-ray diffraction | 2.4 | 2001-11-16 | ||||
| 18 | 1PUF|1|D+ 1PUF|1|E | 5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*AP*CP*GP*CP*T)-3', 5'-D(*TP*AP*GP*CP*GP*TP*CP*GP*TP*AP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3' | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA | X-ray diffraction | 1.9 | 2003-09-02 | ||||
| 19 | 3N4M|1|D | DNA (5'-D(*CP*TP*TP*TP*TP*TP*TP*CP*CP*TP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3') | E. coli RNA polymerase alpha subunit C-terminal domain in complex with CAP and DNA | X-ray diffraction | 2.987 | 2011-05-25 | ||||
| 20 | 3KHL|1|E+ 3KHL|1|D | 5'-D(*CP*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*AP*(DDG))-3' | Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-ray diffraction | 2.1 | 2010-02-16 | ||||
| 21 | 3KHL|1|J+ 3KHL|1|H | 5'-D(*CP*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*AP*(DDG))-3' | Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-ray diffraction | 2.1 | 2010-02-16 | ||||
| 22 | 1A6Y|1|C+ 1A6Y|1|D | DNA (5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*(5IT)P*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3') | REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX | X-ray diffraction | 2.3 | 1998-10-21 | ||||
| 23 | 3RBD|1|E | DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesion | X-ray diffraction | 2.502 | 2011-06-15 | ||||
| 24 | 3RBD|1|J | DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesion | X-ray diffraction | 2.502 | 2011-06-15 | ||||
| 25 | 3RB6|1|E | DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) lesion | X-ray diffraction | 2.7 | 2011-06-15 | ||||
| 26 | 3RB6|1|J | DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) lesion | X-ray diffraction | 2.7 | 2011-06-15 | ||||
| 27 | 1ZG1|1|C+ 1ZG1|1|D | 5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3' | NarL complexed to nirB promoter non-palindromic tail-to-tail DNA site | X-ray diffraction | 2.3 | 2005-11-22 | ||||
| 28 | 1ZG1|1|G+ 1ZG1|1|H | 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3' | NarL complexed to nirB promoter non-palindromic tail-to-tail DNA site | X-ray diffraction | 2.3 | 2005-11-22 | ||||
| 29 | 3C2I|1|B+ 3C2I|1|C | DNA (5'-D(*DTP*DCP*DTP*DGP*DGP*DAP*DAP*(5CM)P*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DTP*DTP*DCP*DTP*DA)-3'), DNA (5'-D(*DAP*DTP*DAP*DGP*DAP*DAP*DGP*DAP*DAP*DTP*DTP*DCP*(5CM)P*DGP*DTP*DTP*DCP*DCP*DAP*DG)-3') | The Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNF | X-ray diffraction | 2.5 | 2008-05-13 | ||||
| 30 | 2WTY|1|C+ 2WTY|1|D | DNA (5'-D(*TP*AP*AP*TP*TP*GP*CP*TP*GP*AP*CP*TP*CP*AP *GP*CP*AP*AP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*TP*TP*GP*CP*TP*GP*AP*GP*TP*CP*AP *GP*CP*AP*AP*TP*T)-3') | Crystal structure of the homodimeric MafB in complex with the T-MARE binding site | X-ray diffraction | 2.9 | 2010-12-08 | ||||
| 31 | 3K5N|1|T+ 3K5N|1|P | DNA (5'-D(*GP*TP*CP*CP*TP*GP*(3DR)*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*G)-3') | Crystal structure of E.coli Pol II-abasic DNA binary complex | X-ray diffraction | 3.15 | 2010-02-02 | ||||
| 32 | 3RB3|1|E | DNA (5'-D(*C*CP*TP*AP*AP*CP*(MG1)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 1-methylguanine (m1g) lesion | X-ray diffraction | 2.8 | 2011-06-15 | ||||
| 33 | 1HLZ|1|C+ 1HLZ|1|D | 5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3' | CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT | X-ray diffraction | 2.8 | 2001-11-16 | ||||
| 34 | 3COQ|1|D+ 3COQ|1|E | DNA (5'-D(*DAP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DAP*DGP*DTP*DCP*DCP*DTP*DCP*DCP*DGP*DG)-3'), DNA (5'-D(*DTP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DTP*DGP*DTP*DCP*DCP*DTP*DCP*DCP*DGP*DG)-3') | synthetic construct | Structural Basis for Dimerization in DNA Recognition by Gal4 | X-ray diffraction | 2.4 | 2008-07-01 | |||
| 35 | 3RBE|1|E | DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesion | X-ray diffraction | 2.8 | 2011-06-15 | ||||
| 36 | 3RBE|1|J | DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesion | X-ray diffraction | 2.8 | 2011-06-15 | ||||
| 37 | 3RB4|1|E | DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesion | X-ray diffraction | 2.805 | 2011-06-15 | ||||
| 38 | 3RB4|1|J | DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesion | X-ray diffraction | 2.805 | 2011-06-15 | ||||
| 39 | 1LE8|1|C+ 1LE8|1|D | 5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*AP*AP*AP*TP*TP*TP*AP*CP*AP*TP*CP*A)-3', 5'-D(*TP*TP*GP*AP*TP*GP*TP*AP*AP*AP*TP*TP*TP*TP*TP*AP*CP*AP*TP*G)-3' | Crystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA Complex | X-ray diffraction | 2.3 | 2002-05-03 | ||||
| 40 | 1FLO|1|F+ 1FLO|1|H+ 1FLO|1|J+ 1FLO|1|L+ 1FLO|1|E+ 1FLO|1|G+ 1FLO|1|I+ 1FLO|1|K | SYMMETRIZED FRT DNA SITES | FLP Recombinase-Holliday Junction Complex I | X-ray diffraction | 2.65 | 2000-09-04 | ||||
| 41 | 2H8R|1|E+ 2H8R|1|F | 5'-D(*CP*TP*TP*GP*GP*TP*TP*AP*AP*TP*AP*AP*TP*TP*CP*AP*CP*CP*AP*G)-3', 5'-D(*GP*CP*TP*GP*GP*TP*GP*AP*AP*TP*TP*AP*TP*TP*AP*AP*CP*CP*AP*A)-3' | Hepatocyte Nuclear Factor 1b bound to DNA: MODY5 Gene Product | X-ray diffraction | 3.2 | 2007-06-19 | ||||
| 42 | 3MZH|1|D | 5'-D(P*CP*AP*CP*GP*TP*GP*AP*CP*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*C)-3' | Crystal structure of cAMP receptor protein from mycobacterium tuberculosis in complex with cAMP and its DNA binding element | X-ray diffraction | 2.9 | 2011-06-08 | ||||
| 43 | 3E00|1|C+ 3E00|1|F | DNA (5'-D(*DCP*DAP*DAP*DAP*DCP*DTP*DAP*DGP*DGP*DTP*DCP*DAP*DAP*DAP*DGP*DGP*DTP*DCP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DCP*DTP*DTP*DTP*DGP*DAP*DCP*DCP*DTP*DAP*DGP*DTP*DTP*DTP*DG)-3') | Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with GW9662, 9-cis Retinoic Acid and NCOA2 Peptide | X-ray diffraction | 3.1 | 2008-10-28 | ||||
| 44 | 3DZY|1|C+ 3DZY|1|F | DNA (5'-D(*DCP*DAP*DAP*DAP*DCP*DTP*DAP*DGP*DGP*DTP*DCP*DAP*DAP*DAP*DGP*DGP*DTP*DCP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DCP*DTP*DTP*DTP*DGP*DAP*DCP*DCP*DTP*DAP*DGP*DTP*DTP*DTP*DG)-3') | Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with Rosiglitazone, 9-cis Retinoic Acid and NCOA2 Peptide | X-ray diffraction | 3.1 | 2008-10-28 | ||||
| 45 | 2R5Y|1|C+ 2R5Y|1|D | DNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DGP*DGP*DGP*DCP*DTP*DG)-3'), DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DCP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DTP*DAP*DGP*DAP*DG)-3') | synthetic construct | Structure of Scr/Exd complex bound to a consensus Hox-Exd site | X-ray diffraction | 2.6 | 2008-02-05 | |||
| 46 | 2R5Z|1|C+ 2R5Z|1|D | DNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DAP*DGP*DAP*DTP*DTP*DAP*DAP*DTP*DCP*DGP*DGP*DCP*DTP*DG)-3'), DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DGP*DAP*DTP*DTP*DAP*DAP*DTP*DCP*DTP*DTP*DAP*DGP*DAP*DG)-3') | synthetic construct | Structure of Scr/Exd complex bound to a DNA sequence derived from the fkh gene | X-ray diffraction | 2.6 | 2008-02-05 | |||
| 47 | 3DZU|1|C+ 3DZU|1|F | DNA (5'-D(*DCP*DAP*DAP*DAP*DCP*DTP*DAP*DGP*DGP*DTP*DCP*DAP*DAP*DAP*DGP*DGP*DTP*DCP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DCP*DTP*DTP*DTP*DGP*DAP*DCP*DCP*DTP*DAP*DGP*DTP*DTP*DTP*DG)-3') | Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with BVT.13, 9-cis Retinoic Acid and NCOA2 Peptide | X-ray diffraction | 3.2 | 2008-10-28 | ||||
| 48 | 1A02|1|A+ 1A02|1|B | DNA (5'-D(*DTP*DTP*DGP*DGP*DAP*DAP*DAP*DAP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DCP*DAP*DTP*DAP*DG)-3'), DNA (5'-D(*DAP*DAP*DCP*DTP*DAP*DTP*DGP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DTP*DTP*DTP*DTP*DCP*DC)-3') | STRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND JUN BOUND TO DNA | X-ray diffraction | 2.7 | 1998-05-27 | ||||
| 49 | 3DFX|1|X+ 3DFX|1|Y | DNA (5'-D(*DTP*DTP*DGP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DGP*DAP*DGP*DAP*DTP*DAP*DAP*DCP*DC)-3'), DNA (5'-D(*DAP*DAP*DGP*DGP*DTP*DTP*DAP*DTP*DCP*DTP*DCP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DC)-3') | Opposite GATA DNA binding | X-ray diffraction | 2.7 | 2008-07-29 | ||||
| 50 | 3FHZ|1|G+ 3FHZ|1|H | 5'-D(*TP*GP*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*AP*CP*A)-3' | Crystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginine | X-ray diffraction | 3.27 | 2009-03-24 | ||||
| 51 | 3FHZ|1|I+ 3FHZ|1|J | 5'-D(*TP*GP*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*AP*CP*A)-3' | Crystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginine | X-ray diffraction | 3.27 | 2009-03-24 | ||||
| 52 | 3FHZ|1|K+ 3FHZ|1|L | 5'-D(*TP*GP*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*AP*CP*A)-3' | Crystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginine | X-ray diffraction | 3.27 | 2009-03-24 | ||||
| 53 | 1S9K|1|A+ 1S9K|1|B | Human IL-2 ARRE1 Promoter Element, Plus Strand, Human IL-2 ARRE1 Promoter Element, Minus Strand | Crystal Structure of Human NFAT1 and Fos-Jun on the IL-2 ARRE1 Site | X-ray diffraction | 3.1 | 2005-06-14 | ||||
| 54 | 2Q2K|1|F | DNA (5'-D(*AP*GP*TP*AP*TP*AP*(5IU)P*AP*CP*(5IU)P*AP*GP*TP*AP*TP*AP*TP*AP*CP*T)-3') | Structure of nucleic-acid binding protein | X-ray diffraction | 3 | 2008-02-05 | ||||
| 55 | 3DFV|1|Y+ 3DFV|1|Z | DNA (5'-D(*DTP*DTP*DCP*DTP*DGP*DAP*DTP*DAP*DAP*DGP*DAP*DCP*DTP*DTP*DAP*DTP*DCP*DTP*DGP*DC)-3'), DNA (5'-D(*DAP*DAP*DGP*DCP*DAP*DGP*DAP*DTP*DAP*DAP*DGP*DTP*DCP*DTP*DTP*DAP*DTP*DCP*DAP*DG)-3') | Adjacent GATA DNA binding | X-ray diffraction | 3.1 | 2008-07-29 | ||||
| 56 | 2WIZ|1|C+ 2WIZ|1|D | HALF-JUNCTION | synthetic construct | Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate | X-ray diffraction | 3.3 | 2009-05-26 | |||
| 57 | 3RB0|1|E | DNA (5'-D(*C*CP*TP*AP*AP*CP*(MG1)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 1-methylguanine (M1G) lesion | X-ray diffraction | 3.225 | 2011-06-15 | ||||
| 58 | 3RB0|1|J | DNA (5'-D(*C*CP*TP*AP*AP*CP*(MG1)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 1-methylguanine (M1G) lesion | X-ray diffraction | 3.225 | 2011-06-15 | ||||
| 59 | 3BDN|1|C+ 3BDN|1|D | DNA (5'-D(*DAP*DAP*DTP*DAP*DCP*DCP*DAP*DCP*DTP*DGP*DGP*DCP*DGP*DGP*DTP*DGP*DAP*DTP*DAP*DT)-3'), DNA (5'-D(*DTP*DAP*DTP*DAP*DTP*DCP*DAP*DCP*DCP*DGP*DCP*DCP*DAP*DGP*DTP*DGP*DGP*DTP*DAP*DT)-3') | Crystal Structure of the Lambda Repressor | X-ray diffraction | 3.909 | 2008-04-15 | ||||
| 60 | 1L3L|1|E+ 1L3L|1|G | 5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3' | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-ray diffraction | 1.66 | 2002-07-03 | ||||
| 61 | 1L3L|1|F+ 1L3L|1|H | 5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3' | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-ray diffraction | 1.66 | 2002-07-03 | ||||
| 62 | 1LMB|1|1+ 1LMB|1|2 | DNA (5'-D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3') | REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEX | X-ray diffraction | 1.8 | 1991-11-05 | ||||
| 63 | 1LLI|1|D+ 1LLI|1|E | DNA (5'-D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3') | THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED HYDROPHOBIC CORE PACKING | X-ray diffraction | 2.1 | 1994-08-31 | ||||
| 64 | 1JE8|1|C+ 1JE8|1|D | 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3' | Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site | X-ray diffraction | 2.12 | 2002-09-27 | ||||
| 65 | 1JE8|1|G+ 1JE8|1|H | 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3' | Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site | X-ray diffraction | 2.12 | 2002-09-27 | ||||
| 66 | 1JNM|1|C+ 1JNM|1|D | 5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3' | Crystal Structure of the Jun/CRE Complex | X-ray diffraction | 2.2 | 2003-06-03 | ||||
| 67 | 1B72|1|D+ 1B72|1|E | DNA (5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*GP*AP*TP*CP*GP*GP*CP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*GP*CP*CP*GP*AP*TP*CP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3') | PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX | X-ray diffraction | 2.35 | 1999-02-19 | ||||
| 68 | 2RAM|1|C+ 2RAM|1|D | DNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*(5IU)P*(5IU)P*CP*CP*AP*GP*CP*CP*G)-3') | A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER | X-ray diffraction | 2.4 | 1998-05-27 | ||||
| 69 | 1RPE|1|A+ 1RPE|1|B | DNA (5'-D(*AP*CP*AP*AP*AP*CP*AP*AP*GP*AP*TP*AP*CP*AP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*TP*GP*TP*AP*TP*CP*TP*TP*GP*T P*TP*TP*G)-3') | THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION | X-ray diffraction | 2.5 | 1994-01-31 | ||||
| 70 | 3CRO|1|A+ 3CRO|1|B | DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3') | THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION | X-ray diffraction | 2.5 | 1991-10-15 | ||||
| 71 | 2OR1|1|A+ 2OR1|1|B | DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3') | RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTION | X-ray diffraction | 2.5 | 1989-09-05 | ||||
| 72 | 1PER|1|A+ 1PER|1|B | DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*GP*TP*TP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*AP*AP*CP*TP*GP*T P*AP*CP*T)-3') | THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITES | X-ray diffraction | 2.5 | 1994-01-31 | ||||
| 73 | 1HWT|1|A+ 1HWT|1|B | DNA (5'-D(*GP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*C)-3') | STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEIN | X-ray diffraction | 2.5 | 1999-11-10 | ||||
| 74 | 2HAP|1|A+ 2HAP|1|B | DNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*T)-3') | STRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN HAVE DIRECT ALLOSTERIC EFFECTS ON TRANSCRIPTIONAL ACTIVATION | X-ray diffraction | 2.5 | 1999-11-10 | ||||
| 75 | 1UBD|1|A+ 1UBD|1|B | DNA (5'-D(*AP*GP*GP*GP*TP*CP*TP*CP*CP*AP*TP*TP*TP*TP*GP*AP*A P*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*TP*TP*CP*AP*AP*AP*AP*TP*GP*GP*AP*GP*AP*C P*CP*CP*T)-3') | CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENT | X-ray diffraction | 2.5 | 1996-12-23 | ||||
| 76 | 1HWT|1|E+ 1HWT|1|F | DNA (5'-D(*GP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*C)-3') | STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEIN | X-ray diffraction | 2.5 | 1999-11-10 | ||||
| 77 | 1RAM|1|C+ 1RAM|1|D | DNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP*AP*GP*CP*CP*G)-3') | A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER | X-ray diffraction | 2.7 | 1998-05-27 | ||||
| 78 | 1FOK|1|B+ 1FOK|1|C | DNA (5'-D(*TP*CP*GP*GP*AP*TP*GP*AP*TP*AP*AP*CP*GP*CP*TP*AP*G P*TP*CP*A)-3'), DNA (5'-D(*AP*TP*GP*AP*CP*TP*AP*GP*CP*GP*TP*TP*AP*TP*CP*AP*T P*CP*CP*G)-3') | Planomicrobium okeanokoites | STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNA | X-ray diffraction | 2.8 | 1997-12-03 | |||
| 79 | 1QP9|1|E+ 1QP9|1|F | DNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*T)-3') | STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7 | X-ray diffraction | 2.8 | 2000-10-09 | ||||
| 80 | 1QP9|1|G+ 1QP9|1|H | DNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*T)-3') | STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7 | X-ray diffraction | 2.8 | 2000-10-09 | ||||
| 81 | 1YSA|1|A+ 1YSA|1|B | DNA (5'-D(*TP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*A P*GP*TP*T)-3'), DNA (5'-D(*AP*AP*AP*CP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*A P*GP*GP*A)-3') | THE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEX | X-ray diffraction | 2.9 | 1993-10-31 | ||||
| 82 | 1FOS|1|A+ 1FOS|1|B | DNA (5'-D(*AP*AP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*AP*GP*GP*AP*GP*A)-3'), DNA (5'-D(*TP*TP*CP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*AP*T)-3') | TWO HUMAN C-FOS:C-JUN:DNA COMPLEXES | X-ray diffraction | 3.05 | 1995-07-10 | ||||
| 83 | 1FOS|1|C+ 1FOS|1|D | DNA (5'-D(*AP*AP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*AP*GP*GP*AP*GP*A)-3'), DNA (5'-D(*TP*TP*CP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*AP*T)-3') | TWO HUMAN C-FOS:C-JUN:DNA COMPLEXES | X-ray diffraction | 3.05 | 1995-07-10 |
Release history
| Release | 0.22 |
|---|---|
| Date | 2011-06-18 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3MGV|1|K+3MGV|1|M+3MGV|1|I+3MGV|1|L | Cre recombinase-DNA transition state | X-RAY DIFFRACTION | 2.29 | 20 | enzyme,recombinase | |
| 2 | 3MGV|1|F+3MGV|1|H+3MGV|1|E+3MGV|1|G | Cre recombinase-DNA transition state | X-RAY DIFFRACTION | 2.29 | 20 | enzyme,recombinase | |
| 3 | 1HWT|1|E+1HWT|1|F | STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEIN | X-RAY DIFFRACTION | 2.5 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription |
| 4 | 1QP9|1|G+1QP9|1|H | STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7 | X-RAY DIFFRACTION | 2.8 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription |
| 5 | 1HWT|1|A+1HWT|1|B | STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEIN | X-RAY DIFFRACTION | 2.5 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription |
| 6 | 1QP9|1|E+1QP9|1|F | STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7 | X-RAY DIFFRACTION | 2.8 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription |
| 7 | 2HAP|1|A+2HAP|1|B | STRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN HAVE DIRECT ALLOSTERIC EFFECTS ON TRANSCRIPTIONAL ACTIVATION | X-RAY DIFFRACTION | 2.5 | 20 | double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription |
| 8 | 3K5N|1|T+3K5N|1|P | Crystal structure of E.coli Pol II-abasic DNA binary complex | X-RAY DIFFRACTION | 3.15 | 20 | double helix,structure | enzyme,polymerase,transferase |
| 9 | 2WIZ|1|C+2WIZ|1|D | Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate | X-RAY DIFFRACTION | 3.3 | 20 | Holliday junction,structure | enzyme,hydrolase,nuclease |
| 10 | 1PUF|1|D+1PUF|1|E | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA | X-RAY DIFFRACTION | 1.9 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 11 | 1S9K|1|A+1S9K|1|B | Crystal Structure of Human NFAT1 and Fos-Jun on the IL-2 ARRE1 Site | X-RAY DIFFRACTION | 3.1 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,immunoglobulin (Ig) fold,leucine zipper (bZIP),regulatory,rel homology,transcription |
| 12 | 1A02|1|A+1A02|1|B | STRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND JUN BOUND TO DNA | X-RAY DIFFRACTION | 2.7 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,immunoglobulin (Ig) fold,leucine zipper (bZIP),regulatory,rel homology,transcription |
| 13 | 1A6Y|1|C+1A6Y|1|D | REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX | X-RAY DIFFRACTION | 2.3 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 14 | 3C2I|1|B+3C2I|1|C | The Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNF | X-RAY DIFFRACTION | 2.5 | 20 | B-form double helix,double helix,structure | chromatin,structural |
| 15 | 1YSA|1|A+1YSA|1|B | THE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEX | X-RAY DIFFRACTION | 2.9 | 20 | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 16 | 2VY2|1|W | Structure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AG-I promoter | X-RAY DIFFRACTION | 2.3 | 20 | B-form double helix,double helix,feature,mispair,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 17 | 2VY1|1|W | Structure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AP1 promoter | X-RAY DIFFRACTION | 2.104 | 20 | B-form double helix,double helix,feature,mispair,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 18 | 2R5Y|1|C+2R5Y|1|D | Structure of Scr/Exd complex bound to a consensus Hox-Exd site | X-RAY DIFFRACTION | 2.6 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 19 | 2WTY|1|C+2WTY|1|D | Crystal structure of the homodimeric MafB in complex with the T-MARE binding site | X-RAY DIFFRACTION | 2.9 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription |
| 20 | 2RAM|1|C+2RAM|1|D | A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER | X-RAY DIFFRACTION | 2.4 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 21 | 1RAM|1|C+1RAM|1|D | A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER | X-RAY DIFFRACTION | 2.7 | 20 | double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 22 | 2R5Z|1|C+2R5Z|1|D | Structure of Scr/Exd complex bound to a DNA sequence derived from the fkh gene | X-RAY DIFFRACTION | 2.6 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 23 | 1FOS|1|C+1FOS|1|D | TWO HUMAN C-FOS:C-JUN:DNA COMPLEXES | X-RAY DIFFRACTION | 3.05 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription |
| 24 | 1B72|1|D+1B72|1|E | PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX | X-RAY DIFFRACTION | 2.35 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 25 | 1UBD|1|A+1UBD|1|B | CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENT | X-RAY DIFFRACTION | 2.5 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 26 | 3COQ|1|D+3COQ|1|E | Structural Basis for Dimerization in DNA Recognition by Gal4 | X-RAY DIFFRACTION | 2.4 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription |
| 27 | 3DFX|1|X+3DFX|1|Y | Opposite GATA DNA binding | X-RAY DIFFRACTION | 2.7 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 28 | 1JNM|1|C+1JNM|1|D | Crystal Structure of the Jun/CRE Complex | X-RAY DIFFRACTION | 2.2 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription |
| 29 | 1FOS|1|A+1FOS|1|B | TWO HUMAN C-FOS:C-JUN:DNA COMPLEXES | X-RAY DIFFRACTION | 3.05 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription |
| 30 | 2H8R|1|E+2H8R|1|F | Hepatocyte Nuclear Factor 1b bound to DNA: MODY5 Gene Product | X-RAY DIFFRACTION | 3.2 | 20 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 31 | 3E00|1|C+3E00|1|F | Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with GW9662, 9-cis Retinoic Acid and NCOA2 Peptide | X-RAY DIFFRACTION | 3.1 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 32 | 3DZY|1|C+3DZY|1|F | Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with Rosiglitazone, 9-cis Retinoic Acid and NCOA2 Peptide | X-RAY DIFFRACTION | 3.1 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 33 | 3DZU|1|C+3DZU|1|F | Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with BVT.13, 9-cis Retinoic Acid and NCOA2 Peptide | X-RAY DIFFRACTION | 3.2 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 34 | 1GA5|1|C+1GA5|1|D | CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT | X-RAY DIFFRACTION | 2.4 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 35 | 1GA5|1|G+1GA5|1|H | CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT | X-RAY DIFFRACTION | 2.4 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 36 | 1HLZ|1|C+1HLZ|1|D | CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT | X-RAY DIFFRACTION | 2.8 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 37 | 1FOK|1|B+1FOK|1|C | STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNA | X-RAY DIFFRACTION | 2.8 | 20 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 38 | 3BDN|1|C+3BDN|1|D | Crystal Structure of the Lambda Repressor | X-RAY DIFFRACTION | 3.909 | 20 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 39 | 1LMB|1|1+1LMB|1|2 | REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEX | X-RAY DIFFRACTION | 1.8 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 40 | 1LLI|1|D+1LLI|1|E | THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED HYDROPHOBIC CORE PACKING | X-RAY DIFFRACTION | 2.1 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 41 | 2HAN|1|C+2HAN|1|D | Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoter | X-RAY DIFFRACTION | 1.95 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 42 | 3DFV|1|Y+3DFV|1|Z | Adjacent GATA DNA binding | X-RAY DIFFRACTION | 3.1 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 43 | 3MZH|1|D | Crystal structure of cAMP receptor protein from mycobacterium tuberculosis in complex with cAMP and its DNA binding element | X-RAY DIFFRACTION | 2.9 | 20 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 44 | 1PER|1|A+1PER|1|B | THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITES | X-RAY DIFFRACTION | 2.5 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 45 | 2OR1|1|A+2OR1|1|B | RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTION | X-RAY DIFFRACTION | 2.5 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 46 | 1RPE|1|A+1RPE|1|B | THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 2.5 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 47 | 3CRO|1|A+3CRO|1|B | THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 2.5 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 48 | 3FHZ|1|K+3FHZ|1|L | Crystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginine | X-RAY DIFFRACTION | 3.27 | 20 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 49 | 3FHZ|1|I+3FHZ|1|J | Crystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginine | X-RAY DIFFRACTION | 3.27 | 20 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 50 | 3FHZ|1|G+3FHZ|1|H | Crystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginine | X-RAY DIFFRACTION | 3.27 | 20 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 51 | 3JXC|1|A+3JXC|1|B | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+ | X-RAY DIFFRACTION | 1.9 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 52 | 3JXD|1|A+3JXD|1|B | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+ | X-RAY DIFFRACTION | 2.1 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 53 | 2R1J|1|A+2R1J|1|B | Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9T | X-RAY DIFFRACTION | 1.53 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 54 | 3JXB|1|A+3JXB|1|B | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C | X-RAY DIFFRACTION | 1.67 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 55 | 1LE8|1|C+1LE8|1|D | Crystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA Complex | X-RAY DIFFRACTION | 2.3 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 56 | 1L3L|1|F+1L3L|1|H | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-RAY DIFFRACTION | 1.66 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 57 | 1L3L|1|E+1L3L|1|G | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-RAY DIFFRACTION | 1.66 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 58 | 1ZG5|1|G+1ZG5|1|H | NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site | X-RAY DIFFRACTION | 2.3 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 59 | 1ZG5|1|C+1ZG5|1|D | NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site | X-RAY DIFFRACTION | 2.3 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 60 | 1ZG1|1|C+1ZG1|1|D | NarL complexed to nirB promoter non-palindromic tail-to-tail DNA site | X-RAY DIFFRACTION | 2.3 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 61 | 1ZG1|1|G+1ZG1|1|H | NarL complexed to nirB promoter non-palindromic tail-to-tail DNA site | X-RAY DIFFRACTION | 2.3 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 62 | 1JE8|1|G+1JE8|1|H | Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site | X-RAY DIFFRACTION | 2.12 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 63 | 1JE8|1|C+1JE8|1|D | Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site | X-RAY DIFFRACTION | 2.12 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 64 | 2Q2K|1|F | Structure of nucleic-acid binding protein | X-RAY DIFFRACTION | 3 | 20 | double helix,structure | centromere,chromatin,structural |
| 65 | 1FLO|1|F+1FLO|1|H+1FLO|1|J+1FLO|1|L+1FLO|1|E+1FLO|1|G+1FLO|1|I+1FLO|1|K | FLP Recombinase-Holliday Junction Complex I | X-RAY DIFFRACTION | 2.65 | 20 | Holliday junction,structure | enzyme,recombinase |
| 66 | 3RBD|1|J | Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesion | X-RAY DIFFRACTION | 2.502 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 67 | 3RB6|1|J | Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) lesion | X-RAY DIFFRACTION | 2.7 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 68 | 3RB3|1|E | Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 1-methylguanine (m1g) lesion | X-RAY DIFFRACTION | 2.8 | 24 | enzyme,polymerase,transferase | |
| 69 | 3RBE|1|E | Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesion | X-RAY DIFFRACTION | 2.8 | 21 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 70 | 3RB0|1|E | Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 1-methylguanine (M1G) lesion | X-RAY DIFFRACTION | 3.225 | 23 | double helix,structure | enzyme,polymerase,transferase |
| 71 | 3RB4|1|E | Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesion | X-RAY DIFFRACTION | 2.805 | 24 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 72 | 3RB6|1|E | Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) lesion | X-RAY DIFFRACTION | 2.7 | 24 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 73 | 3RBD|1|E | Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesion | X-RAY DIFFRACTION | 2.502 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 74 | 3RBE|1|J | Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesion | X-RAY DIFFRACTION | 2.8 | 10 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 75 | 3RB0|1|J | Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 1-methylguanine (M1G) lesion | X-RAY DIFFRACTION | 3.225 | 17 | double helix,structure | enzyme,polymerase,transferase |
| 76 | 3RAX|1|E | Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesion | X-RAY DIFFRACTION | 1.891 | 40 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 77 | 3RAQ|1|E | Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesion | X-RAY DIFFRACTION | 2.25 | 34 | enzyme,polymerase,transferase | |
| 78 | 3RAX|1|J | Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesion | X-RAY DIFFRACTION | 1.891 | 38 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 79 | 3RAQ|1|J | Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesion | X-RAY DIFFRACTION | 2.25 | 29 | enzyme,polymerase,transferase | |
| 80 | 3RB4|1|J | Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesion | X-RAY DIFFRACTION | 2.805 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 81 | 3KHL|1|J+3KHL|1|H | Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-RAY DIFFRACTION | 2.1 | 20 | enzyme,polymerase,transferase | |
| 82 | 3KHL|1|E+3KHL|1|D | Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-RAY DIFFRACTION | 2.1 | 20 | enzyme,polymerase,transferase | |
| 83 | 3N4M|1|D | E. coli RNA polymerase alpha subunit C-terminal domain in complex with CAP and DNA | X-RAY DIFFRACTION | 2.987 | 34 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),enzyme,helix-turn-helix (HTH),polymerase,regulatory,transcription,transferase,winged helix/forkhead |
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