Equivalence class DNA_4.0_21527.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 232D|1|A (rep) | DNA (5'-D(*AP*GP*GP*CP*AP*TP*GP*CP*CP*T)-3') | THE HIGH RESOLUTION CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGGCATGCCT) | X-ray diffraction | 1.3 | 1996-03-22 | ||||
| 2 | 441D|1|A | DNA (5'-D(*AP*GP*GP*GP*GP*CP*CP*CP*CP*T)-3') | synthetic construct | HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) | X-ray diffraction | 1.5 | 1999-01-15 | |||
| 3 | 238D|1|A | DNA (5'-D(*AP*GP*GP*(CBR)P*AP*TP*GP*CP*CP*T)-3') | CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGG(BR)CATGCCT): COMPARISON WITH D(AGGCATGCCT) AND IMPLICATIONS FOR COBALT HEXAMMINE BINDING TO DNA | X-ray diffraction | 2 | 1996-01-30 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 238D|1|A | CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGG(BR)CATGCCT): COMPARISON WITH D(AGGCATGCCT) AND IMPLICATIONS FOR COBALT HEXAMMINE BINDING TO DNA | X-RAY DIFFRACTION | 2 | 10 | A-form double helix,double helix,structure | |
| 2 | 441D|1|A | HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) | X-RAY DIFFRACTION | 1.5 | 10 | double helix,structure | |
| 3 | 232D|1|A | THE HIGH RESOLUTION CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGGCATGCCT) | X-RAY DIFFRACTION | 1.3 | 10 | A-form double helix,double helix,structure |
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