Equivalence class DNA_4.0_20715.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3D71|1|M (rep) | BMR promoter DNA | synthetic construct | Crystal structure of E253Q BMRR bound to 22 base pair promoter site | X-ray diffraction | 2.8 | 2008-08-26 | |||
| 2 | 3D6Z|1|B | BMR promoter DNA | synthetic construct | Crystal structure of R275E mutant of BMRR bound to DNA and rhodamine | X-ray diffraction | 2.6 | 2008-08-26 | |||
| 3 | 3D6Y|1|B | BMR promoter DNA | synthetic construct | Crystal structure of R275E mutant of BMRR bound to DNA and berberine | X-ray diffraction | 2.7 | 2008-08-26 | |||
| 4 | 3D70|1|B | Multidrug-efflux transporter 1 regulator | Bacillus subtilis | Crystal structure of E253A mutant of BMRR bound to 22-bp oligonucleotide | X-ray diffraction | 2.8 | 2008-08-26 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3D70|1|B | Crystal structure of E253A mutant of BMRR bound to 22-bp oligonucleotide | X-RAY DIFFRACTION | 2.8 | 24 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 2 | 3D71|1|M | Crystal structure of E253Q BMRR bound to 22 base pair promoter site | X-RAY DIFFRACTION | 2.8 | 24 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 3 | 3D6Y|1|B | Crystal structure of R275E mutant of BMRR bound to DNA and berberine | X-RAY DIFFRACTION | 2.7 | 24 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 4 | 3D6Z|1|B | Crystal structure of R275E mutant of BMRR bound to DNA and rhodamine | X-RAY DIFFRACTION | 2.6 | 24 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
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