Equivalence class DNA_4.0_20604.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2OYT|1|C+ 2OYT|1|B (rep) | DNA strand2, DNA strand1 | Crystal Structure of UNG2/DNA(TM) | X-ray diffraction | 2 | 2007-10-30 | ||||
| 2 | 2OXM|1|C+ 2OXM|1|B | DNA (5'-D(*AP*AP*AP*GP*AP*TP*(4MF)P*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*TP*AP*TP*CP*TP*T)-3') | Crystal structure of a UNG2/modified DNA complex that represent a stabilized short-lived extrahelical state in ezymatic DNA base flipping | X-ray diffraction | 2.5 | 2007-10-30 | ||||
| 3 | 1EMH|1|C+ 1EMH|1|B | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*(P2U)P*AP*TP*CP*TP*T)-3') | CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA | X-ray diffraction | 1.8 | 2000-05-16 | ||||
| 4 | 1Q3F|1|C+ 1Q3F|1|B | 5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3', 5'-D(*TP*GP*TP*(NRI)P*AP*TP*CP*TP*T)-3' | Uracil DNA glycosylase bound to a cationic 1-aza-2'-deoxyribose-containing DNA | X-ray diffraction | 1.9 | 2004-03-23 | ||||
| 5 | 1EMJ|1|C+ 1EMJ|1|B | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*(ASU)P*AP*TP*CP*TP*T)-3') | URACIL-DNA GLYCOSYLASE BOUND TO DNA CONTAINING A 4'-THIO-2'DEOXYURIDINE ANALOG PRODUCT | X-ray diffraction | 2 | 2000-05-16 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1EMH|1|C+1EMH|1|B | CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA | X-RAY DIFFRACTION | 1.8 | 10 | double helix,structure | enzyme,hydrolase |
| 2 | 2OYT|1|C+2OYT|1|B | Crystal Structure of UNG2/DNA(TM) | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 3 | 1Q3F|1|C+1Q3F|1|B | Uracil DNA glycosylase bound to a cationic 1-aza-2'-deoxyribose-containing DNA | X-RAY DIFFRACTION | 1.9 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 4 | 1EMJ|1|C+1EMJ|1|B | URACIL-DNA GLYCOSYLASE BOUND TO DNA CONTAINING A 4'-THIO-2'DEOXYURIDINE ANALOG PRODUCT | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 5 | 2OXM|1|C+2OXM|1|B | Crystal structure of a UNG2/modified DNA complex that represent a stabilized short-lived extrahelical state in ezymatic DNA base flipping | X-RAY DIFFRACTION | 2.5 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase |
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