Equivalence class DNA_4.0_17913.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3I3M|1|B (rep) | DNA (5'-D(P*TP*(ME6)P*T)-3') | Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate and methylated trinucleotide T-meC-T | X-ray diffraction | 1.5 | 2009-08-25 | ||||
| 2 | 3I49|1|B | DNA (5'-D(P*TP*(ME6)P*T)-3') | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meC-T | X-ray diffraction | 1.6 | 2009-08-25 | ||||
| 3 | 3I2O|1|B | DNA (5'-D(P*TP*(MA7)P*T)-3') | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meA-T | X-ray diffraction | 1.7 | 2009-08-25 | ||||
| 4 | 2FDI|1|B | 5'-D(P*TP*(MA7)P*T)-3' | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T (air 3 hours) | X-ray diffraction | 1.8 | 2006-02-21 | ||||
| 5 | 2FDH|1|B | 5'-D(P*TP*(MA7)P*T)-3' | Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T | X-ray diffraction | 2.1 | 2006-02-21 | ||||
| 6 | 2FD8|1|B | 5'-D(P*TP*(MA7)P*T)-3' | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T | X-ray diffraction | 2.3 | 2006-02-21 | ||||
| 7 | 2FDG|1|B | 5'-D(P*TP*(MA7)P*T)-3' | Crystal Structure of AlkB in complex with Fe(II), succinate, and methylated trinucleotide T-meA-T | X-ray diffraction | 2.2 | 2006-02-21 | ||||
| 8 | 2FDF|1|B | 5'-D(P*TP*(MA7)P*T)-3' | Crystal Structure of AlkB in complex with Co(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T | X-ray diffraction | 2.1 | 2006-02-21 | ||||
| 9 | 2FDK|1|B | 5'-D(P*TP*(MA7)P*T)-3' | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T (air 9 days) | X-ray diffraction | 2.3 | 2006-02-21 | ||||
| 10 | 2F55|1|E | 5'-D(P*(DU)P*(DU)P*(DU))-3' | Two hepatitis c virus ns3 helicase domains complexed with the same strand of dna | X-ray diffraction | 3.3 | 2005-12-06 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2FDH|1|B | Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T | X-RAY DIFFRACTION | 2.1 | 3 | enzyme,oxidoreductase | |
| 2 | 2FDI|1|B | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T (air 3 hours) | X-RAY DIFFRACTION | 1.8 | 3 | enzyme,oxidoreductase | |
| 3 | 3I2O|1|B | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meA-T | X-RAY DIFFRACTION | 1.7 | 3 | enzyme,oxidoreductase | |
| 4 | 2FDF|1|B | Crystal Structure of AlkB in complex with Co(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T | X-RAY DIFFRACTION | 2.1 | 3 | enzyme,oxidoreductase | |
| 5 | 2FDK|1|B | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T (air 9 days) | X-RAY DIFFRACTION | 2.3 | 3 | enzyme,oxidoreductase | |
| 6 | 2FDG|1|B | Crystal Structure of AlkB in complex with Fe(II), succinate, and methylated trinucleotide T-meA-T | X-RAY DIFFRACTION | 2.2 | 3 | enzyme,oxidoreductase | |
| 7 | 2FD8|1|B | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T | X-RAY DIFFRACTION | 2.3 | 3 | enzyme,oxidoreductase | |
| 8 | 3I3M|1|B | Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate and methylated trinucleotide T-meC-T | X-RAY DIFFRACTION | 1.5 | 3 | enzyme,oxidoreductase | |
| 9 | 3I49|1|B | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meC-T | X-RAY DIFFRACTION | 1.6 | 3 | enzyme,oxidoreductase | |
| 10 | 2F55|1|E | Two hepatitis c virus ns3 helicase domains complexed with the same strand of dna | X-RAY DIFFRACTION | 3.3 | 3 | enzyme,helicase,hydrolase |
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