Equivalence class DNA_4.0_14194.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2ITL|1|C+ 2ITL|1|W (rep) | 24-nt PEN element of the SV40 DNA origin | The origin binding domain of the SV40 large T antigen bound to the functional pen palindrome DNA (23 bp) | X-ray diffraction | 1.65 | 2006-12-12 | ||||
| 2 | 1H6F|1|C+ 1H6F|1|D | 5'-D(*TP*AP*AP*TP*TP*TP*CP*AP*CP*AP*CP*CP*TP* AP*GP*GP*TP*GP*TP*GP*AP*AP*AP*T)-3' | synthetic construct | Human TBX3, a transcription factor responsible for ulnar-mammary syndrome, bound to a palindromic DNA site | X-ray diffraction | 1.7 | 2002-04-19 | |||
| 3 | 1XBR|1|C+ 1XBR|1|D | DNA (5'-D(*AP*AP*TP*TP*TP*CP*AP*CP*AP*CP*CP*TP*AP*GP*GP*TP*G P*TP*GP*AP*AP*AP* TP*T)-3') | T DOMAIN FROM XENOPUS LAEVIS BOUND TO DNA | X-ray diffraction | 2.5 | 1998-01-16 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2ITL|1|C+2ITL|1|W | The origin binding domain of the SV40 large T antigen bound to the functional pen palindrome DNA (23 bp) | X-RAY DIFFRACTION | 1.65 | 24 | double helix,feature,mispair,structure | DNA replication/repair,enzyme,helicase,hydrolase,regulatory |
| 2 | 1XBR|1|C+1XBR|1|D | T DOMAIN FROM XENOPUS LAEVIS BOUND TO DNA | X-RAY DIFFRACTION | 2.5 | 24 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 3 | 1H6F|1|C+1H6F|1|D | Human TBX3, a transcription factor responsible for ulnar-mammary syndrome, bound to a palindromic DNA site | X-RAY DIFFRACTION | 1.7 | 24 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
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