Equivalence class DNA_4.0_10627.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2IH2|1|B+ 2IH2|1|C (rep) | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(5PY)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 5-methylpyrimidin-2(1H)-one at the target base partner position | X-ray diffraction | 1.61 | 2007-11-13 | ||||
| 2 | 2IH2|1|E+ 2IH2|1|F | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(5PY)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 5-methylpyrimidin-2(1H)-one at the target base partner position | X-ray diffraction | 1.61 | 2007-11-13 | ||||
| 3 | 2IBT|1|B+ 2IBT|1|C | 5'-D(*GP*TP*TP*CP*GP*(2PR)P*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(3DR)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position and an abasic site analog at the target base partner position | X-ray diffraction | 1.7 | 2007-05-29 | ||||
| 4 | 2IBT|1|E+ 2IBT|1|F | 5'-D(*GP*TP*TP*CP*GP*(2PR)P*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(3DR)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position and an abasic site analog at the target base partner position | X-ray diffraction | 1.7 | 2007-05-29 | ||||
| 5 | 2IH5|1|B+ 2IH5|1|C | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(3DR)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target base partner position | X-ray diffraction | 1.8 | 2007-11-13 | ||||
| 6 | 2NP7|1|B+ 2NP7|1|C | 5'-D(*GP*TP*TP*CP*GP*(3DR)P*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(4PC)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target position and pyrrolo-dC at the target base partner position | X-ray diffraction | 1.9 | 2007-11-13 | ||||
| 7 | 2JG3|1|B+ 2JG3|1|C | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*CP)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*6MAP*AP*CP)-3' | synthetic construct | MtaqI with BAZ | X-ray diffraction | 1.9 | 2007-08-07 | |||
| 8 | 2JG3|1|E+ 2JG3|1|F | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*CP)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*6MAP*AP*CP)-3' | synthetic construct | MtaqI with BAZ | X-ray diffraction | 1.9 | 2007-08-07 | |||
| 9 | 1G38|1|B+ 1G38|1|C | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3' | ADENINE-SPECIFIC METHYLTRANSFERASE M. TAQ I/DNA COMPLEX | X-ray diffraction | 2 | 2001-03-05 | ||||
| 10 | 1G38|1|E+ 1G38|1|F | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3' | ADENINE-SPECIFIC METHYLTRANSFERASE M. TAQ I/DNA COMPLEX | X-ray diffraction | 2 | 2001-03-05 | ||||
| 11 | 2IH4|1|B+ 2IH4|1|C | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(4PC)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing pyrrolo-dC at the target base partner position | X-ray diffraction | 2.1 | 2007-11-13 | ||||
| 12 | 2IH4|1|E+ 2IH4|1|F | 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*(4PC)P*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing pyrrolo-dC at the target base partner position | X-ray diffraction | 2.1 | 2007-11-13 | ||||
| 13 | 2IBS|1|B+ 2IBS|1|C | 5'-D(*GP*TP*TP*CP*GP*(2PR)P*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position | X-ray diffraction | 2.4 | 2007-05-29 | ||||
| 14 | 2IBS|1|E+ 2IBS|1|F | 5'-D(*GP*TP*TP*CP*GP*(2PR)P*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position | X-ray diffraction | 2.4 | 2007-05-29 | ||||
| 15 | 2NP6|1|B+ 2NP6|1|C | 5'-D(*GP*TP*TP*CP*GP*(3DR)P*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target position | X-ray diffraction | 2.1 | 2007-11-13 | ||||
| 16 | 2NP6|1|E+ 2NP6|1|F | 5'-D(*GP*TP*TP*CP*GP*(3DR)P*TP*GP*TP*C)-3', 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3' | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target position | X-ray diffraction | 2.1 | 2007-11-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1G38|1|E+1G38|1|F | ADENINE-SPECIFIC METHYLTRANSFERASE M. TAQ I/DNA COMPLEX | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 2 | 2IH2|1|E+2IH2|1|F | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 5-methylpyrimidin-2(1H)-one at the target base partner position | X-RAY DIFFRACTION | 1.61 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 3 | 2IBS|1|E+2IBS|1|F | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 4 | 2JG3|1|E+2JG3|1|F | MtaqI with BAZ | X-RAY DIFFRACTION | 1.9 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 5 | 2NP6|1|E+2NP6|1|F | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target position | X-RAY DIFFRACTION | 2.1 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 6 | 2IBT|1|B+2IBT|1|C | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position and an abasic site analog at the target base partner position | X-RAY DIFFRACTION | 1.7 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 7 | 1G38|1|B+1G38|1|C | ADENINE-SPECIFIC METHYLTRANSFERASE M. TAQ I/DNA COMPLEX | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 8 | 2IH2|1|B+2IH2|1|C | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 5-methylpyrimidin-2(1H)-one at the target base partner position | X-RAY DIFFRACTION | 1.61 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 9 | 2IBS|1|B+2IBS|1|C | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position | X-RAY DIFFRACTION | 2.4 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 10 | 2JG3|1|B+2JG3|1|C | MtaqI with BAZ | X-RAY DIFFRACTION | 1.9 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 11 | 2NP6|1|B+2NP6|1|C | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target position | X-RAY DIFFRACTION | 2.1 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 12 | 2IH4|1|E+2IH4|1|F | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing pyrrolo-dC at the target base partner position | X-RAY DIFFRACTION | 2.1 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 13 | 2IH4|1|B+2IH4|1|C | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing pyrrolo-dC at the target base partner position | X-RAY DIFFRACTION | 2.1 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 14 | 2NP7|1|B+2NP7|1|C | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target position and pyrrolo-dC at the target base partner position | X-RAY DIFFRACTION | 1.9 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 15 | 2IH5|1|B+2IH5|1|C | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target base partner position | X-RAY DIFFRACTION | 1.8 | 10 | enzyme,methylase,transferase | |
| 16 | 2IBT|1|E+2IBT|1|F | Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position and an abasic site analog at the target base partner position | X-RAY DIFFRACTION | 1.7 | 10 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
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