Equivalence class DNA_4.0_09813.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3HW8|1|B+ 3HW8|1|C+ 3HW8|1|D (rep) | 5'-D(*CP*GP*GP*CP*CP*AP*AP*TP*AP*CP*TP*G)-3', 5'-D(*CP*AP*GP*TP*AP*T)-3', 5'-D(P*GP*CP*CP*G)-3' | ternary complex of DNA polymerase lambda of a two nucleotide gapped DNA substrate with a C in the scrunch site | X-ray diffraction | 1.95 | 2009-08-25 | ||||
| 2 | 3HWT|1|T+ 3HWT|1|P+ 3HWT|1|D | 5'-D(P*GP*CP*CP*G)-3', 5'-D(*CP*AP*GP*TP*AP*(2DT))-3', 5'-D(*CP*GP*GP*CP*AP*AP*AP*TP*AP*CP*TP*G)-3' | Ternary complex of DNA polymerase lambda bound to a two nucleotide gapped DNA substrate with a scrunched dA | X-ray diffraction | 1.95 | 2009-08-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3HW8|1|B+3HW8|1|C+3HW8|1|D | ternary complex of DNA polymerase lambda of a two nucleotide gapped DNA substrate with a C in the scrunch site | X-RAY DIFFRACTION | 1.95 | 12 | enzyme,polymerase,transferase | |
| 2 | 3HWT|1|T+3HWT|1|P+3HWT|1|D | Ternary complex of DNA polymerase lambda bound to a two nucleotide gapped DNA substrate with a scrunched dA | X-RAY DIFFRACTION | 1.95 | 12 | enzyme,polymerase,transferase |
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