Equivalence class DNA_4.0_08874.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3CVU|1|C+ 3CVU|1|D (rep) | DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3') | Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion | X-ray diffraction | 2 | 2008-11-04 | ||||
| 2 | 3CVV|1|C+ 3CVV|1|D | DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3') | Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion and F0 cofactor | X-ray diffraction | 2.1 | 2009-06-16 | ||||
| 3 | 2WQ6|1|C+ 2WQ6|1|D | 5'-D(*AP*CP*AP*GP*CP*GP*GP*TDYP*CDWP*GP* CP*AP*AP*GP*T)-3', 5'-D(*TP*AP*CP*CP*TP*GP*CP*GP*AP*CP* CP*GP*CP*TP*G)-3' | Structure of the 6-4 photolyase of D. melanogaster in complex with the non-natural N4-methyl T(Dewar)C lesion | X-ray diffraction | 2.3 | 2010-02-23 | ||||
| 4 | 3CVY|1|C+ 3CVY|1|D | DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3') | Drosophila melanogaster (6-4) photolyase bound to repaired ds DNA | X-ray diffraction | 2.7 | 2008-11-04 | ||||
| 5 | 3CVX|1|C+ 3CVX|1|D | DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3') | Drosophila melanogaster (6-4) photolyase H369M mutant bound to ds DNA with a T-T (6-4) photolesion | X-ray diffraction | 3.2 | 2009-10-13 | ||||
| 6 | 3CVW|1|C+ 3CVW|1|D | DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3') | Drosophila melanogaster (6-4) photolyase H365N mutant bound to ds DNA with a T-T (6-4) photolesion and cofactor F0 | X-ray diffraction | 3.2 | 2009-10-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3CVW|1|C+3CVW|1|D | Drosophila melanogaster (6-4) photolyase H365N mutant bound to ds DNA with a T-T (6-4) photolesion and cofactor F0 | X-RAY DIFFRACTION | 3.2 | 15 | enzyme,lyase | |
| 2 | 3CVX|1|C+3CVX|1|D | Drosophila melanogaster (6-4) photolyase H369M mutant bound to ds DNA with a T-T (6-4) photolesion | X-RAY DIFFRACTION | 3.2 | 15 | enzyme,lyase | |
| 3 | 3CVU|1|C+3CVU|1|D | Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion | X-RAY DIFFRACTION | 2 | 15 | enzyme,lyase | |
| 4 | 3CVV|1|C+3CVV|1|D | Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion and F0 cofactor | X-RAY DIFFRACTION | 2.1 | 15 | enzyme,lyase | |
| 5 | 2WQ6|1|C+2WQ6|1|D | Structure of the 6-4 photolyase of D. melanogaster in complex with the non-natural N4-methyl T(Dewar)C lesion | X-RAY DIFFRACTION | 2.3 | 15 | enzyme,lyase | |
| 6 | 3CVY|1|C+3CVY|1|D | Drosophila melanogaster (6-4) photolyase bound to repaired ds DNA | X-RAY DIFFRACTION | 2.7 | 15 | enzyme,lyase |
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