Equivalence class DNA_4.0_06871.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3BBB|1|G (rep) | DNA (5'-D(*AP*G)-3') | synthetic construct | Crystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG) | X-ray diffraction | 1.3 | 2008-09-23 | |||
| 2 | 3BBB|1|H | DNA (5'-D(*AP*G)-3') | synthetic construct | Crystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG) | X-ray diffraction | 1.3 | 2008-09-23 | |||
| 3 | 3BBB|1|I | DNA (5'-D(*AP*G)-3') | synthetic construct | Crystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG) | X-ray diffraction | 1.3 | 2008-09-23 | |||
| 4 | 3BBB|1|J | DNA (5'-D(*AP*G)-3') | synthetic construct | Crystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG) | X-ray diffraction | 1.3 | 2008-09-23 | |||
| 5 | 1F0V|1|M | 5'-D(*CP*G)-3' | Crystal structure of an Rnase A dimer displaying a new type of 3D domain swapping | X-ray diffraction | 1.7 | 2001-02-21 | ||||
| 6 | 1F0V|1|N | 5'-D(*CP*G)-3' | Crystal structure of an Rnase A dimer displaying a new type of 3D domain swapping | X-ray diffraction | 1.7 | 2001-02-21 | ||||
| 7 | 1F0V|1|O | 5'-D(*CP*G)-3' | Crystal structure of an Rnase A dimer displaying a new type of 3D domain swapping | X-ray diffraction | 1.7 | 2001-02-21 | ||||
| 8 | 1F0V|1|P | 5'-D(*CP*G)-3' | Crystal structure of an Rnase A dimer displaying a new type of 3D domain swapping | X-ray diffraction | 1.7 | 2001-02-21 | ||||
| 9 | 2OK0|1|D | 5'-D(*TP*C)-3' | Fab ED10-DNA complex | X-ray diffraction | 1.89 | 2007-06-12 | ||||
| 10 | 3NGZ|1|D | 5'-D(P*GP*C)-3' | Crystal structure of RNase T in complex with a non-preferred ssDNA (GC) with one Mg in the active site | X-ray diffraction | 2.1 | 2011-02-16 | ||||
| 11 | 3NGZ|1|C | 5'-D(P*GP*C)-3' | Crystal structure of RNase T in complex with a non-preferred ssDNA (GC) with one Mg in the active site | X-ray diffraction | 2.1 | 2011-02-16 | ||||
| 12 | 1I8M|1|D | 5'-D(P*TP*T)-3' | CRYSTAL STRUCTURE OF A RECOMBINANT ANTI-SINGLE-STRANDED DNA ANTIBODY FRAGMENT COMPLEXED WITH DT5 | X-ray diffraction | 2.1 | 2001-12-07 | ||||
| 13 | 1XAM|1|D+ 1XAM|1|E | TG | Cobalt hexammine induced tautameric shift in Z-DNA: structure of d(CGCGCA).d(TGCGCG) in two crystal forms. | X-ray diffraction | 1.86 | 2004-11-16 | ||||
| 14 | 1PV4|1|G | 5'-D(P*CP*C)-3' | X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA | X-ray diffraction | 3 | 2003-07-22 | ||||
| 15 | 1PV4|1|H | 5'-D(P*CP*C)-3' | X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA | X-ray diffraction | 3 | 2003-07-22 | ||||
| 16 | 1PV4|1|J | 5'-D(P*CP*C)-3' | X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA | X-ray diffraction | 3 | 2003-07-22 | ||||
| 17 | 1PV4|1|K | 5'-D(P*CP*C)-3' | X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA | X-ray diffraction | 3 | 2003-07-22 | ||||
| 18 | 1PV4|1|L | 5'-D(P*CP*C)-3' | X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA | X-ray diffraction | 3 | 2003-07-22 | ||||
| 19 | 2DWL|1|E | 5'-D(*AP*(DC))-3' | Crystal structure of the PriA protein complexed with oligonucleotides | X-ray diffraction | 3.2 | 2006-11-07 | ||||
| 20 | 2DWL|1|F | 5'-D(*AP*(DC))-3' | Crystal structure of the PriA protein complexed with oligonucleotides | X-ray diffraction | 3.2 | 2006-11-07 | ||||
| 21 | 2D7G|1|E | DNA (5'-D(P*AP*A)-3') | synthetic construct | Crystal structure of the aa complex of the N-terminal domain of PriA | X-ray diffraction | 3.3 | 2006-11-07 | |||
| 22 | 2D7G|1|F | DNA (5'-D(P*AP*A)-3') | synthetic construct | Crystal structure of the aa complex of the N-terminal domain of PriA | X-ray diffraction | 3.3 | 2006-11-07 | |||
| 23 | 2D7G|1|G | DNA (5'-D(P*AP*A)-3') | synthetic construct | Crystal structure of the aa complex of the N-terminal domain of PriA | X-ray diffraction | 3.3 | 2006-11-07 | |||
| 24 | 2D7G|1|H | DNA (5'-D(P*AP*A)-3') | synthetic construct | Crystal structure of the aa complex of the N-terminal domain of PriA | X-ray diffraction | 3.3 | 2006-11-07 | |||
| 25 | 2HTT|1|D+ 2HTT|1|E | DNA (5'-D(P*DTP*DG)-3') | Ruthenium Hexammine ion interactions with Z-DNA | X-ray diffraction | 2.6 | 2006-08-08 | ||||
| 26 | 2DWM|1|E | 5'-D(*AP*T)-3' | Crystal structure of the PriA protein complexed with oligonucleotides | X-ray diffraction | 3.15 | 2006-11-07 | ||||
| 27 | 2DWM|1|F | 5'-D(*AP*T)-3' | Crystal structure of the PriA protein complexed with oligonucleotides | X-ray diffraction | 3.15 | 2006-11-07 | ||||
| 28 | 2DWM|1|G | 5'-D(*AP*T)-3' | Crystal structure of the PriA protein complexed with oligonucleotides | X-ray diffraction | 3.15 | 2006-11-07 | ||||
| 29 | 2DWN|1|E | DNA (5'-D(*A*G)-3') | synthetic construct | Crystal structure of the PriA protein complexed with oligonucleotides | X-ray diffraction | 3.35 | 2006-11-07 | |||
| 30 | 2DWN|1|F | DNA (5'-D(*A*G)-3') | synthetic construct | Crystal structure of the PriA protein complexed with oligonucleotides | X-ray diffraction | 3.35 | 2006-11-07 | |||
| 31 | 1DN8|1|A+ 1DN8|1|B | DNA (5'-D(*P*CP*GP*TP*AP*CP*GP*TP*AP*CP*G)-3') | STRUCTURE OF A Z-DNA WITH TWO DIFFERENT BACKBONE CHAIN CONFORMATIONS. STABILIZATION OF THE DECADEOXYOLIGONUCLEOTIDE D(CGTACGTACG) BY (CO(NH3)6)3+ BINDING TO THE GUANINE | X-ray diffraction | 1.5 | 1988-04-16 | ||||
| 32 | 1D53|1|A+ 1D53|1|B | DNA (5'-D(*CP*GP*CP*IP*CP*IP*CP*G)-3') | CRYSTAL STRUCTURE AT 1.5 ANGSTROMS RESOLUTION OF D(CGCICICG), AN OCTANUCLEOTIDE CONTAINING INOSINE, AND ITS COMPARISON WITH D(CGCG) AND D(CGCGCG) STRUCTURES | X-ray diffraction | 1.5 | 1993-04-13 | ||||
| 33 | 279D|1|A | DNA (5'-D(*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3' | CRYSTAL STRUCTURE OF THE SELF-COMPLEMENTARY 5'-PURINE START DECAMER D(GCGCGCGCGC) IN THE Z-DNA CONFORMATION-PART I | X-ray diffraction | 1.9 | 1996-06-27 | ||||
| 34 | 1RNB|1|C | DNA (5'-D(*GP*C)-3') | CRYSTAL STRUCTURE OF A BARNASE-D(*GP*C) COMPLEX AT 1.9 ANGSTROMS RESOLUTION | X-ray diffraction | 1.9 | 1992-07-15 | ||||
| 35 | 1EHL|1|A | 5'-(D(5HT)P*(6-4)T)-3' | 64M-2 ANTIBODY FAB COMPLEXED WITH D(5HT)(6-4)T | X-ray diffraction | 2.4 | 2001-02-21 | ||||
| 36 | 1IJS|1|A | DNA (5'-D(*AP*C)-3') | Canine parvovirus | CPV (STRAIN D) mutant A300D, complex (VIRAL COAT/DNA), VP2, PH=7.5, T=4 DEGREES C | X-ray diffraction | 3.25 | 1996-12-23 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3BBB|1|I | Crystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG) | X-RAY DIFFRACTION | 1.3 | 2 | NAKB_NA_annotation | NAKB_protein_annotation |
| 2 | 2OK0|1|D | Fab ED10-DNA complex | X-RAY DIFFRACTION | 1.89 | 2 | antibody,immune system,regulatory | |
| 3 | 1I8M|1|D | CRYSTAL STRUCTURE OF A RECOMBINANT ANTI-SINGLE-STRANDED DNA ANTIBODY FRAGMENT COMPLEXED WITH DT5 | X-RAY DIFFRACTION | 2.1 | 2 | antibody,immune system,regulatory | |
| 4 | 2DWN|1|F | Crystal structure of the PriA protein complexed with oligonucleotides | X-RAY DIFFRACTION | 3.35 | 2 | enzyme,helicase,hydrolase | |
| 5 | 2D7G|1|E | Crystal structure of the aa complex of the N-terminal domain of PriA | X-RAY DIFFRACTION | 3.3 | 2 | enzyme,helicase,hydrolase | |
| 6 | 3BBB|1|J | Crystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG) | X-RAY DIFFRACTION | 1.3 | 2 | NAKB_NA_annotation | NAKB_protein_annotation |
| 7 | 1PV4|1|G | X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA | X-RAY DIFFRACTION | 3 | 2 | RNA-binding transcription factor,enzyme,helicase,hydrolase,regulatory,transcription | |
| 8 | 2D7G|1|F | Crystal structure of the aa complex of the N-terminal domain of PriA | X-RAY DIFFRACTION | 3.3 | 2 | enzyme,helicase,hydrolase | |
| 9 | 1F0V|1|M | Crystal structure of an Rnase A dimer displaying a new type of 3D domain swapping | X-RAY DIFFRACTION | 1.7 | 2 | enzyme,hydrolase,nuclease | |
| 10 | 279D|1|A | CRYSTAL STRUCTURE OF THE SELF-COMPLEMENTARY 5'-PURINE START DECAMER D(GCGCGCGCGC) IN THE Z-DNA CONFORMATION-PART I | X-RAY DIFFRACTION | 1.9 | 2 | double helix,structure | |
| 11 | 2DWN|1|E | Crystal structure of the PriA protein complexed with oligonucleotides | X-RAY DIFFRACTION | 3.35 | 2 | enzyme,helicase,hydrolase | |
| 12 | 1F0V|1|O | Crystal structure of an Rnase A dimer displaying a new type of 3D domain swapping | X-RAY DIFFRACTION | 1.7 | 2 | enzyme,hydrolase,nuclease | |
| 13 | 1PV4|1|L | X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA | X-RAY DIFFRACTION | 3 | 2 | RNA-binding transcription factor,enzyme,helicase,hydrolase,regulatory,transcription | |
| 14 | 1PV4|1|J | X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA | X-RAY DIFFRACTION | 3 | 2 | RNA-binding transcription factor,enzyme,helicase,hydrolase,regulatory,transcription | |
| 15 | 2DWL|1|F | Crystal structure of the PriA protein complexed with oligonucleotides | X-RAY DIFFRACTION | 3.2 | 2 | enzyme,helicase,hydrolase | |
| 16 | 2HTT|1|D+2HTT|1|E | Ruthenium Hexammine ion interactions with Z-DNA | X-RAY DIFFRACTION | 2.6 | 2 | Z-form double helix,double helix,structure | |
| 17 | 3NGZ|1|C | Crystal structure of RNase T in complex with a non-preferred ssDNA (GC) with one Mg in the active site | X-RAY DIFFRACTION | 2.1 | 9 | enzyme,hydrolase,nuclease | |
| 18 | 2DWL|1|E | Crystal structure of the PriA protein complexed with oligonucleotides | X-RAY DIFFRACTION | 3.2 | 2 | enzyme,helicase,hydrolase | |
| 19 | 1RNB|1|C | CRYSTAL STRUCTURE OF A BARNASE-D(*GP*C) COMPLEX AT 1.9 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 1.9 | 2 | enzyme,hydrolase,nuclease | |
| 20 | 3NGZ|1|D | Crystal structure of RNase T in complex with a non-preferred ssDNA (GC) with one Mg in the active site | X-RAY DIFFRACTION | 2.1 | 13 | enzyme,hydrolase,nuclease | |
| 21 | 1EHL|1|A | 64M-2 ANTIBODY FAB COMPLEXED WITH D(5HT)(6-4)T | X-RAY DIFFRACTION | 2.4 | 2 | antibody,immune system,regulatory | |
| 22 | 1IJS|1|A | CPV (STRAIN D) mutant A300D, complex (VIRAL COAT/DNA), VP2, PH=7.5, T=4 DEGREES C | X-RAY DIFFRACTION | 3.25 | 2 | structural,virus | |
| 23 | 2D7G|1|G | Crystal structure of the aa complex of the N-terminal domain of PriA | X-RAY DIFFRACTION | 3.3 | 2 | enzyme,helicase,hydrolase | |
| 24 | 1DN8|1|A+1DN8|1|B | STRUCTURE OF A Z-DNA WITH TWO DIFFERENT BACKBONE CHAIN CONFORMATIONS. STABILIZATION OF THE DECADEOXYOLIGONUCLEOTIDE D(CGTACGTACG) BY (CO(NH3)6)3+ BINDING TO THE GUANINE | X-RAY DIFFRACTION | 1.5 | 2 | Z-form double helix,double helix,structure | |
| 25 | 1F0V|1|N | Crystal structure of an Rnase A dimer displaying a new type of 3D domain swapping | X-RAY DIFFRACTION | 1.7 | 2 | enzyme,hydrolase,nuclease | |
| 26 | 3BBB|1|H | Crystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG) | X-RAY DIFFRACTION | 1.3 | 2 | NAKB_NA_annotation | NAKB_protein_annotation |
| 27 | 3BBB|1|G | Crystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG) | X-RAY DIFFRACTION | 1.3 | 2 | NAKB_NA_annotation | NAKB_protein_annotation |
| 28 | 2DWM|1|E | Crystal structure of the PriA protein complexed with oligonucleotides | X-RAY DIFFRACTION | 3.15 | 2 | enzyme,helicase,hydrolase | |
| 29 | 1F0V|1|P | Crystal structure of an Rnase A dimer displaying a new type of 3D domain swapping | X-RAY DIFFRACTION | 1.7 | 2 | enzyme,hydrolase,nuclease | |
| 30 | 1PV4|1|K | X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA | X-RAY DIFFRACTION | 3 | 2 | RNA-binding transcription factor,enzyme,helicase,hydrolase,regulatory,transcription | |
| 31 | 1PV4|1|H | X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA | X-RAY DIFFRACTION | 3 | 2 | RNA-binding transcription factor,enzyme,helicase,hydrolase,regulatory,transcription | |
| 32 | 2DWM|1|F | Crystal structure of the PriA protein complexed with oligonucleotides | X-RAY DIFFRACTION | 3.15 | 2 | enzyme,helicase,hydrolase | |
| 33 | 2DWM|1|G | Crystal structure of the PriA protein complexed with oligonucleotides | X-RAY DIFFRACTION | 3.15 | 2 | enzyme,helicase,hydrolase | |
| 34 | 1XAM|1|D+1XAM|1|E | Cobalt hexammine induced tautameric shift in Z-DNA: structure of d(CGCGCA).d(TGCGCG) in two crystal forms. | X-RAY DIFFRACTION | 1.86 | 2 | Z-form double helix,double helix,structure | |
| 35 | 1D53|1|A+1D53|1|B | CRYSTAL STRUCTURE AT 1.5 ANGSTROMS RESOLUTION OF D(CGCICICG), AN OCTANUCLEOTIDE CONTAINING INOSINE, AND ITS COMPARISON WITH D(CGCG) AND D(CGCGCG) STRUCTURES | X-RAY DIFFRACTION | 1.5 | 2 | Z-form double helix,double helix,structure | |
| 36 | 2D7G|1|H | Crystal structure of the aa complex of the N-terminal domain of PriA | X-RAY DIFFRACTION | 3.3 | 2 | enzyme,helicase,hydrolase |
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