Equivalence class DNA_4.0_03320.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3Q23|1|D (rep) | DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3') | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GMPCPP and Manganese: sustrate complex II | X-ray diffraction | 1.8 | 2011-02-16 | ||||
| 2 | 3Q23|1|C | DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3') | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GMPCPP and Manganese: sustrate complex II | X-ray diffraction | 1.8 | 2011-02-16 | ||||
| 3 | 3Q24|1|D | DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3') | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with pppGpG and pyrophosphate: product complex | X-ray diffraction | 1.81 | 2011-02-16 | ||||
| 4 | 3Q24|1|C | DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3') | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with pppGpG and pyrophosphate: product complex | X-ray diffraction | 1.81 | 2011-02-16 | ||||
| 5 | 3Q22|1|D | DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3') | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GTP and Magnesium: substrate complex I | X-ray diffraction | 2.11 | 2011-02-16 | ||||
| 6 | 3Q22|1|C | DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3') | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GTP and Magnesium: substrate complex I | X-ray diffraction | 2.11 | 2011-02-16 | ||||
| 7 | 3Q0A|1|C | DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*A*GP*TP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3') | X-ray crystal structure of the transcription initiation complex of the N4 mini-vRNAP with P2 promoter: Mismatch complex | X-ray diffraction | 2.69 | 2011-02-23 | ||||
| 8 | 3Q0A|1|D | DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*A*GP*TP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3') | X-ray crystal structure of the transcription initiation complex of the N4 mini-vRNAP with P2 promoter: Mismatch complex | X-ray diffraction | 2.69 | 2011-02-23 | ||||
| 9 | 3C46|1|C | P2_7a Promoter DNA | X-ray crystal structure of the N4 mini-vRNAP P2_7a promoter complex soaked with MgCl2 | X-ray diffraction | 2 | 2008-12-09 | ||||
| 10 | 3C46|1|D | P2_7a Promoter DNA | X-ray crystal structure of the N4 mini-vRNAP P2_7a promoter complex soaked with MgCl2 | X-ray diffraction | 2 | 2008-12-09 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3Q0A|1|C | X-ray crystal structure of the transcription initiation complex of the N4 mini-vRNAP with P2 promoter: Mismatch complex | X-RAY DIFFRACTION | 2.69 | 30 | enzyme,polymerase,transferase | |
| 2 | 3Q0A|1|D | X-ray crystal structure of the transcription initiation complex of the N4 mini-vRNAP with P2 promoter: Mismatch complex | X-RAY DIFFRACTION | 2.69 | 23 | enzyme,polymerase,transferase | |
| 3 | 3Q22|1|C | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GTP and Magnesium: substrate complex I | X-RAY DIFFRACTION | 2.11 | 70 | enzyme,polymerase,transferase | |
| 4 | 3Q24|1|C | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with pppGpG and pyrophosphate: product complex | X-RAY DIFFRACTION | 1.81 | 102 | enzyme,polymerase,transferase | |
| 5 | 3Q23|1|C | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GMPCPP and Manganese: sustrate complex II | X-RAY DIFFRACTION | 1.8 | 112 | enzyme,polymerase,transferase | |
| 6 | 3Q23|1|D | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GMPCPP and Manganese: sustrate complex II | X-RAY DIFFRACTION | 1.8 | 128 | enzyme,polymerase,transferase | |
| 7 | 3Q22|1|D | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GTP and Magnesium: substrate complex I | X-RAY DIFFRACTION | 2.11 | 90 | enzyme,polymerase,transferase | |
| 8 | 3Q24|1|D | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with pppGpG and pyrophosphate: product complex | X-RAY DIFFRACTION | 1.81 | 118 | enzyme,polymerase,transferase | |
| 9 | 3C46|1|C | X-ray crystal structure of the N4 mini-vRNAP P2_7a promoter complex soaked with MgCl2 | X-RAY DIFFRACTION | 2 | 36 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase |
| 10 | 3C46|1|D | X-ray crystal structure of the N4 mini-vRNAP P2_7a promoter complex soaked with MgCl2 | X-RAY DIFFRACTION | 2 | 36 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase |
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