Equivalence class DNA_4.0_02509.1 Current
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2G8I|1|B (rep) | 5'-R(*UP*CP*GP*AP*CP*A)-3' | B. halodurans RNase H catalytic domain D192N mutant in complex with Mn2+ and RNA/DNA hybrid (non-P nick at the active site) | X-ray diffraction | 1.65 | 2006-04-25 | ||||
2 | 2G8F|1|B | 5'-R(*UP*CP*GP*AP*CP*A)-3' | B. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site) | X-ray diffraction | 1.65 | 2006-04-25 | ||||
3 | 2G8K|1|B | 5'-R(*UP*CP*GP*AP*CP*A)-3' | B. halodurans RNase H catalytic domain D192N mutant in complex with Ca2+ and RNA/DNA hybrid (non-P nick at the active site) | X-ray diffraction | 1.65 | 2006-04-25 | ||||
4 | 2G8H|1|B | 5'-R(*UP*CP*GP*AP*CP*A)-3' | B. halodurans RNase H catalytic domain D192N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site) | X-ray diffraction | 1.85 | 2006-04-25 | ||||
5 | 2R7Y|1|B | RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') | Selenium Derivatized RNA/DNA Hybrid in complex with RNase H CATALYTIC DOMAIN MUTANT D132N | X-ray diffraction | 1.8 | 2008-05-06 | ||||
6 | 2G8V|1|B | 5'-R(P*UP*CP*GP*AP*CP*A)-3' | B. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (reaction product) | X-ray diffraction | 1.85 | 2006-04-25 | ||||
7 | 2G8W|1|B | 5'-R(P*UP*CP*GP*AP*CP*A)-3' | B. halodurans RNase H catalytic domain E188A mutant in complex with Ca2+ and RNA/DNA hybrid | X-ray diffraction | 2.05 | 2006-04-25 | ||||
8 | 2G8U|1|B | 5'-R(*UP*CP*GP*AP*CP*A)-3' | B. halodurans RNase H catalytic domain D132N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site) | X-ray diffraction | 2.7 | 2006-04-25 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 0.13 | 0.14 | 0.15 | 0.16 | 0.17 | 0.18 | 0.19 | 0.20 | 0.21 | 0.22 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2011-02-05 | 2011-02-12 | 2011-02-16 | 2011-02-19 | 2011-02-26 | 2011-03-05 | 2011-03-12 | 2011-03-19 | 2011-03-26 | 2011-04-02 | 2011-04-09 | 2011-04-11 | 2011-04-16 | 2011-04-23 | 2011-04-30 | 2011-05-07 | 2011-05-14 | 2011-05-21 | 2011-05-28 | 2011-06-04 | 2011-06-11 | 2011-06-18 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 2G8W|1|B | B. halodurans RNase H catalytic domain E188A mutant in complex with Ca2+ and RNA/DNA hybrid | X-RAY DIFFRACTION | 2.05 | 6 | A-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
2 | 2G8U|1|B | B. halodurans RNase H catalytic domain D132N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site) | X-RAY DIFFRACTION | 2.7 | 6 | A-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
3 | 2G8H|1|B | B. halodurans RNase H catalytic domain D192N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site) | X-RAY DIFFRACTION | 1.85 | 6 | A-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
4 | 2G8I|1|B | B. halodurans RNase H catalytic domain D192N mutant in complex with Mn2+ and RNA/DNA hybrid (non-P nick at the active site) | X-RAY DIFFRACTION | 1.65 | 6 | A-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
5 | 2G8F|1|B | B. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site) | X-RAY DIFFRACTION | 1.65 | 6 | A-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
6 | 2G8K|1|B | B. halodurans RNase H catalytic domain D192N mutant in complex with Ca2+ and RNA/DNA hybrid (non-P nick at the active site) | X-RAY DIFFRACTION | 1.65 | 6 | A-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
7 | 2R7Y|1|B | Selenium Derivatized RNA/DNA Hybrid in complex with RNase H CATALYTIC DOMAIN MUTANT D132N | X-RAY DIFFRACTION | 1.8 | 6 | A-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
8 | 2G8V|1|B | B. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (reaction product) | X-RAY DIFFRACTION | 1.85 | 6 | A-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
Coloring options: