Equivalence class DNA_4.0_02263.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1M6R|1|A+ 1M6R|1|B (rep) | 5'-R(*G)D(*CP*GP*CP*GP*CP*G)-3' | Crystal structure of rGd(CGCGCG) forming hexamer Z-DNA duplex with 5'-(rG) overhang | X-ray diffraction | 1.54 | 2003-02-25 | ||||
| 2 | 3EYI|1|C+ 3EYI|1|D | 5'-TCGCGCG-3' | The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA | X-ray diffraction | 1.45 | 2009-01-13 | ||||
| 3 | 1SFU|1|C+ 1SFU|1|D | 5'-D(*T*CP*GP*CP*GP*CP*G)-3' | Crystal structure of the viral Zalpha domain bound to left-handed Z-DNA | X-ray diffraction | 2 | 2004-08-17 | ||||
| 4 | 2HEO|1|B+ 2HEO|1|E | 5'-D(*TP*CP*GP*CP*GP*CP*G)-3' | General Structure-Based Approach to the Design of Protein Ligands: Application to the Design of Kv1.2 Potassium Channel Blockers. | X-ray diffraction | 1.7 | 2006-11-21 | ||||
| 5 | 3F22|1|D+ 3F22|1|E | DNA (5'-D(*DTP*DCP*DGP*DTP*DAP*DCP*DG)-3') | Crystal structure of Zalpha in complex with d(CGTACG) | X-ray diffraction | 2.5 | 2008-12-30 | ||||
| 6 | 3F22|1|F | DNA (5'-D(*DTP*DCP*DGP*DTP*DAP*DCP*DG)-3') | Crystal structure of Zalpha in complex with d(CGTACG) | X-ray diffraction | 2.5 | 2008-12-30 | ||||
| 7 | 1J75|1|B | 5'-D(*TP*CP*GP*CP*GP*CP*G)-3' | Crystal Structure of the DNA-Binding Domain Zalpha of DLM-1 Bound to Z-DNA | X-ray diffraction | 1.85 | 2001-09-01 | ||||
| 8 | 3F21|1|D+ 3F21|1|E | DNA (5'-D(*DTP*DCP*DAP*DCP*DGP*DTP*DG)-3') | Crystal structure of Zalpha in complex with d(CACGTG) | X-ray diffraction | 2.2 | 2008-12-30 | ||||
| 9 | 3F21|1|F | DNA (5'-D(*DTP*DCP*DAP*DCP*DGP*DTP*DG)-3') | Crystal structure of Zalpha in complex with d(CACGTG) | X-ray diffraction | 2.2 | 2008-12-30 | ||||
| 10 | 3F23|1|D+ 3F23|1|E | DNA (5'-D(*DTP*DCP*DGP*DGP*DCP*DCP*DG)-3') | Crystal structure of Zalpha in complex with d(CGGCCG) | X-ray diffraction | 2.7 | 2008-12-30 | ||||
| 11 | 331D|1|A+ 331D|1|B | DNA (5'-D(*GP*CP*GP*CP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF D(GCGCGCG) WITH 5'-OVERHANG G'S | X-ray diffraction | 1.65 | 1997-09-24 | ||||
| 12 | 313D|1|A+ 313D|1|B | DNA (5'-D(*GP*(5CM)P*GP*CP*GP*CP*G)-3') | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE HOOGSTEEN BASE PAIR | X-ray diffraction | 1.68 | 1997-08-05 | ||||
| 13 | 312D|1|A+ 312D|1|B | DNA (5'-D(*GP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*CP*GP*CP*GP*CP*G)-3') | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE WATSON-CRICK BASE PAIR | X-ray diffraction | 1.8 | 1997-08-28 | ||||
| 14 | 314D|1|A+ 314D|1|B | DNA (5'-D(*GP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE WOBBLE BASE PAIR | X-ray diffraction | 1.9 | 1997-08-05 | ||||
| 15 | 1QBJ|1|D+ 1QBJ|1|E | DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX | X-ray diffraction | 2.1 | 1999-07-02 | ||||
| 16 | 1QBJ|1|F | DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX | X-ray diffraction | 2.1 | 1999-07-02 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3F22|1|F | Crystal structure of Zalpha in complex with d(CGTACG) | X-RAY DIFFRACTION | 2.5 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 2 | 3F23|1|D+3F23|1|E | Crystal structure of Zalpha in complex with d(CGGCCG) | X-RAY DIFFRACTION | 2.7 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 3 | 3EYI|1|C+3EYI|1|D | The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA | X-RAY DIFFRACTION | 1.45 | 7 | Z-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 4 | 314D|1|A+314D|1|B | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE WOBBLE BASE PAIR | X-RAY DIFFRACTION | 1.9 | 7 | Z-form double helix,double helix,structure | |
| 5 | 331D|1|A+331D|1|B | CRYSTAL STRUCTURE OF D(GCGCGCG) WITH 5'-OVERHANG G'S | X-RAY DIFFRACTION | 1.65 | 7 | Z-form double helix,double helix,structure | |
| 6 | 312D|1|A+312D|1|B | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE WATSON-CRICK BASE PAIR | X-RAY DIFFRACTION | 1.8 | 7 | Z-form double helix,double helix,structure | |
| 7 | 313D|1|A+313D|1|B | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE HOOGSTEEN BASE PAIR | X-RAY DIFFRACTION | 1.68 | 7 | Z-form double helix,double helix,structure | |
| 8 | 3F21|1|F | Crystal structure of Zalpha in complex with d(CACGTG) | X-RAY DIFFRACTION | 2.2 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 9 | 3F21|1|D+3F21|1|E | Crystal structure of Zalpha in complex with d(CACGTG) | X-RAY DIFFRACTION | 2.2 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 10 | 2HEO|1|B+2HEO|1|E | General Structure-Based Approach to the Design of Protein Ligands: Application to the Design of Kv1.2 Potassium Channel Blockers. | X-RAY DIFFRACTION | 1.7 | 7 | Z-form double helix,double helix,structure | cell cycle,regulatory |
| 11 | 1SFU|1|C+1SFU|1|D | Crystal structure of the viral Zalpha domain bound to left-handed Z-DNA | X-RAY DIFFRACTION | 2 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 12 | 1M6R|1|A+1M6R|1|B | Crystal structure of rGd(CGCGCG) forming hexamer Z-DNA duplex with 5'-(rG) overhang | X-RAY DIFFRACTION | 1.54 | 7 | Z-form double helix,double helix,structure | |
| 13 | 3F22|1|D+3F22|1|E | Crystal structure of Zalpha in complex with d(CGTACG) | X-RAY DIFFRACTION | 2.5 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 14 | 1QBJ|1|D+1QBJ|1|E | CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX | X-RAY DIFFRACTION | 2.1 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 15 | 1QBJ|1|F | CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX | X-RAY DIFFRACTION | 2.1 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 16 | 1J75|1|B | Crystal Structure of the DNA-Binding Domain Zalpha of DLM-1 Bound to Z-DNA | X-RAY DIFFRACTION | 1.85 | 7 | Z-form double helix,double helix,structure | cell cycle,regulatory |
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