Equivalence class DNA_4.0_02194.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 454D|1|A+ 454D|1|B (rep) | 5'-D(*GP*(5IU)P*TP*GP*CP*AP*AP*C)-3' | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-ray diffraction | 1.2 | 2000-02-21 | ||||
| 2 | 454D|1|C+ 454D|1|D | 5'-D(*GP*(5IU)P*TP*GP*CP*AP*AP*C)-3' | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-ray diffraction | 1.2 | 2000-02-21 | ||||
| 3 | 454D|1|E+ 454D|1|F | 5'-D(*GP*(5IU)P*TP*GP*CP*AP*AP*C)-3' | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-ray diffraction | 1.2 | 2000-02-21 | ||||
| 4 | 454D|1|G+ 454D|1|H | 5'-D(*GP*(5IU)P*TP*GP*CP*AP*AP*C)-3' | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-ray diffraction | 1.2 | 2000-02-21 | ||||
| 5 | 454D|1|I+ 454D|1|J | 5'-D(*GP*(5IU)P*TP*GP*CP*AP*AP*C)-3' | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-ray diffraction | 1.2 | 2000-02-21 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 454D|1|A+454D|1|B | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-RAY DIFFRACTION | 1.2 | 8 | B-form double helix,double helix,structure | |
| 2 | 454D|1|E+454D|1|F | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-RAY DIFFRACTION | 1.2 | 8 | B-form double helix,double helix,structure | |
| 3 | 454D|1|G+454D|1|H | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-RAY DIFFRACTION | 1.2 | 8 | B-form double helix,double helix,structure | |
| 4 | 454D|1|I+454D|1|J | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-RAY DIFFRACTION | 1.2 | 8 | B-form double helix,double helix,structure | |
| 5 | 454D|1|C+454D|1|D | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-RAY DIFFRACTION | 1.2 | 8 | B-form double helix,double helix,structure |
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