Equivalence class DNA_4.0_01538.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3MNN|1|J (rep) | DNA (145-MER) | A Ruthenium Antitumour Agent Forms Specific Histone Protein Adducts in the Nucleosome Core | X-ray diffraction | 2.5 | 2011-04-06 | ||||
| 2 | 3MNN|1|I | DNA (145-MER) | A Ruthenium Antitumour Agent Forms Specific Histone Protein Adducts in the Nucleosome Core | X-ray diffraction | 2.5 | 2011-04-06 | ||||
| 3 | 2NZD|1|I+ 2NZD|1|J | DNA (145-MER) | Nucleosome core particle containing 145 bp of DNA | X-ray diffraction | 2.65 | 2007-04-10 | ||||
| 4 | 3KUY|1|I+ 3KUY|1|J | DNA (145-MER) | DNA Stretching in the Nucleosome Facilitates Alkylation by an Intercalating Antitumor Agent | X-ray diffraction | 2.9 | 2010-01-05 | ||||
| 5 | 3LZ1|1|I+ 3LZ1|1|J | DNA (145-MER) | Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 2) | X-ray diffraction | 2.5 | 2010-09-15 | ||||
| 6 | 3LZ0|1|I+ 3LZ0|1|J | DNA (145-MER) | Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 1) | X-ray diffraction | 2.5 | 2010-09-15 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3MNN|1|J | A Ruthenium Antitumour Agent Forms Specific Histone Protein Adducts in the Nucleosome Core | X-RAY DIFFRACTION | 2.5 | 146 | B-form double helix,double helix,feature,mispair,structure | chromatin,nucleosome,structural |
| 2 | 3MNN|1|I | A Ruthenium Antitumour Agent Forms Specific Histone Protein Adducts in the Nucleosome Core | X-RAY DIFFRACTION | 2.5 | 145 | B-form double helix,double helix,feature,mispair,structure | chromatin,nucleosome,structural |
| 3 | 3KUY|1|I+3KUY|1|J | DNA Stretching in the Nucleosome Facilitates Alkylation by an Intercalating Antitumor Agent | X-RAY DIFFRACTION | 2.9 | 145 | B-form double helix,double helix,structure | chromatin,nucleosome,structural |
| 4 | 2NZD|1|I+2NZD|1|J | Nucleosome core particle containing 145 bp of DNA | X-RAY DIFFRACTION | 2.65 | 145 | B-form double helix,double helix,structure | chromatin,nucleosome,structural |
| 5 | 3LZ0|1|I+3LZ0|1|J | Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 1) | X-RAY DIFFRACTION | 2.5 | 145 | B-form double helix,double helix,structure | chromatin,nucleosome,structural |
| 6 | 3LZ1|1|I+3LZ1|1|J | Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 2) | X-RAY DIFFRACTION | 2.5 | 145 | chromatin,nucleosome,structural |
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