Equivalence class DNA_3.5_21798.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3FL6|1|C+ 3FL6|1|D (rep) | 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3', 5'-D(*CP*GP*CP*AP*CP*GP*C)-3' | Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) | X-ray diffraction | 1.17 | 2009-12-29 | ||||
| 2 | 2PY5|1|L | 5'-d(GGACTTT)-3' | Phi29 DNA polymerase complexed with single-stranded DNA | X-ray diffraction | 1.6 | 2007-07-17 | ||||
| 3 | 2WBS|1|F+ 2WBS|1|G | 5'-D(*GP*AP*GP*GP*CP*GP*CP)-3', 5'-D(*GP*CP*GP*CP*CP*TP*CP)-3' | Mus musculus | Crystal structure of the zinc finger domain of Klf4 bound to its target DNA | X-ray diffraction | 1.7 | 2010-04-07 | |||
| 4 | 3Q8P|1|P | DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3') | synthetic construct | Human DNA polymerase iota incorporating dCTP opposite 8-oxo-guanine | X-ray diffraction | 1.95 | 2011-02-23 | |||
| 5 | 3Q8Q|1|P | DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3') | synthetic construct | Human DNA polymerase iota incorporating dATP opposite 8-oxo-guanine | X-ray diffraction | 2.031 | 2011-02-23 | |||
| 6 | 1S9B|1|A+ 1S9B|1|B | 5'-D(*GP*AP*AP*TP*TP*CP*G)-3' | Crystal Structure Analysis of the B-DNA GAATTCG | X-ray diffraction | 2.81 | 2004-09-07 | ||||
| 7 | 2QHB|1|C+ 2QHB|1|D | 5'-D(P*TP*TP*TP*AP*GP*GP*G)-3', 5'-D(P*CP*CP*CP*TP*AP*AP*A)-3' | synthetic construct | Crystal structure of NgTRF complexed with telomeric DNA | X-ray diffraction | 2.4 | 2008-07-15 | |||
| 8 | 2QHB|1|E+ 2QHB|1|F | 5'-D(P*TP*TP*TP*AP*GP*GP*G)-3', 5'-D(P*CP*CP*CP*TP*AP*AP*A)-3' | synthetic construct | Crystal structure of NgTRF complexed with telomeric DNA | X-ray diffraction | 2.4 | 2008-07-15 | |||
| 9 | 3Q8S|1|P | DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3') | synthetic construct | Human DNA polymerase iota incorporating dTTP opposite 8-oxo-guanine | X-ray diffraction | 2.09 | 2011-02-23 | |||
| 10 | 3E44|1|E+ 3E44|1|H | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DT)-3', 5'-D(P*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Q138F HincII bound to cleaved DNA (GTT | AAC) and Mn2+ | X-ray diffraction | 2.52 | 2008-08-26 | ||||
| 11 | 3Q8R|1|P | DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3') | synthetic construct | Human DNA polymerase iota incorporating dGTP opposite 8-oxo-guanine | X-ray diffraction | 2.45 | 2011-02-23 | |||
| 12 | 1FIU|1|I+ 1FIU|1|J+ 1FIU|1|E+ 1FIU|1|F | DNA (5'-D(P*CP*CP*GP*GP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*G)-3') | TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA | X-ray diffraction | 1.6 | 2001-02-07 | ||||
| 13 | 1FIU|1|K+ 1FIU|1|L+ 1FIU|1|G+ 1FIU|1|H | DNA (5'-D(P*CP*CP*GP*GP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*G)-3') | TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA | X-ray diffraction | 1.6 | 2001-02-07 | ||||
| 14 | 1XHV|1|E+ 1XHV|1|I+ 1XHV|1|H+ 1XHV|1|L | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-ray diffraction | 2.5 | 2004-09-28 | ||||
| 15 | 1XHV|1|G+ 1XHV|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-ray diffraction | 2.5 | 2004-09-28 | ||||
| 16 | 1XHV|1|K+ 1XHV|1|J | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-ray diffraction | 2.5 | 2004-09-28 | ||||
| 17 | 9ICW|1|T+ 9ICW|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; NATIVE STRUCTURE | X-ray diffraction | 2.6 | 1996-11-15 | ||||
| 18 | 9ICK|1|T+ 9ICK|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR | X-ray diffraction | 2.7 | 1996-11-15 | ||||
| 19 | 7ICE|1|T+ 7ICE|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(P*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CACL2 | X-ray diffraction | 2.8 | 1996-11-15 | ||||
| 20 | 9ICL|1|T+ 9ICL|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF PYROPHOSPHATE AND MNCL2 | X-ray diffraction | 2.8 | 1996-11-15 | ||||
| 21 | 7ICV|1|T+ 7ICV|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND IN THE ABSENCE OF NACL | X-ray diffraction | 2.8 | 1996-11-15 | ||||
| 22 | 7ICI|1|T+ 7ICI|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR) | X-ray diffraction | 2.8 | 1996-11-15 | ||||
| 23 | 7ICN|1|T+ 7ICN|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF NICL2 | X-ray diffraction | 2.8 | 1996-04-19 | ||||
| 24 | 7ICT|1|T+ 7ICT|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 AND MGCL2 | X-ray diffraction | 2.8 | 1996-11-15 | ||||
| 25 | 7ICS|1|T+ 7ICS|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-ray diffraction | 2.8 | 1996-04-19 | ||||
| 26 | 2BZF|1|B+ 2BZF|1|C | 5'-D(*GP*TP*GP*GP*AP*GP*GP)-3', 5'-D(*CP*CP*TP*CP*CP*AP*CP)-3' | Structural basis for DNA bridging by barrier-to-autointegration factor (BAF) | X-ray diffraction | 2.87 | 2005-09-15 | ||||
| 27 | 9ICM|1|T+ 9ICM|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) | X-ray diffraction | 2.9 | 1996-11-15 | ||||
| 28 | 9ICO|1|T+ 9ICO|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 | X-ray diffraction | 2.9 | 1995-12-16 | ||||
| 29 | 9ICS|1|T+ 9ICS|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MNCL2 | X-ray diffraction | 2.9 | 1996-11-15 | ||||
| 30 | 9ICQ|1|T+ 9ICQ|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) | X-ray diffraction | 2.9 | 1996-11-15 | ||||
| 31 | 7ICK|1|T+ 7ICK|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF MGCL2 | X-ray diffraction | 2.9 | 1996-04-19 | ||||
| 32 | 7ICH|1|T+ 7ICH|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF COCL2 | X-ray diffraction | 2.9 | 1996-04-19 | ||||
| 33 | 7ICQ|1|T+ 7ICQ|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-ray diffraction | 2.9 | 1996-04-19 | ||||
| 34 | 9ICU|1|T+ 9ICU|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) | X-ray diffraction | 2.9 | 1996-11-15 | ||||
| 35 | 1XHU|1|E+ 1XHU|1|I+ 1XHU|1|H+ 1XHU|1|L | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved, cognate DNA containing GTCGAC | X-ray diffraction | 2.95 | 2004-09-28 | ||||
| 36 | 1XHU|1|G+ 1XHU|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved, cognate DNA containing GTCGAC | X-ray diffraction | 2.95 | 2004-09-28 | ||||
| 37 | 1XHU|1|K+ 1XHU|1|J | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved, cognate DNA containing GTCGAC | X-ray diffraction | 2.95 | 2004-09-28 | ||||
| 38 | 3LLN|1|A+ 3LLN|1|B | DNA (5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*AP*CP*GP*C)-3') | Comparison between the orthorhombic an tetragonal form of the heptamer sequence d(GCG(xT)GCG)/d(CGCACGC). | X-ray diffraction | 3 | 2010-08-18 | ||||
| 39 | 9ICY|1|P+ 9ICY|1|T | DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*TP*AP*GP*A)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NON GAPPED DNA ONLY) | X-ray diffraction | 3 | 1996-11-15 | ||||
| 40 | 9ICT|1|T+ 9ICT|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 | X-ray diffraction | 3 | 1996-11-15 | ||||
| 41 | 9ICR|1|T+ 9ICR|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 | X-ray diffraction | 3 | 1996-01-04 | ||||
| 42 | 7ICG|1|T+ 7ICG|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CDCL2 | X-ray diffraction | 3 | 1996-04-19 | ||||
| 43 | 7ICM|1|T+ 7ICM|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR) | X-ray diffraction | 3 | 1996-11-15 | ||||
| 44 | 7ICR|1|T+ 7ICR|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-ray diffraction | 3 | 1996-11-15 | ||||
| 45 | 9ICN|1|T+ 9ICN|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MGCL2 | X-ray diffraction | 3 | 1995-12-16 | ||||
| 46 | 7ICP|1|T+ 7ICP|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR) | X-ray diffraction | 3 | 1996-11-15 | ||||
| 47 | 7ICL|1|T+ 7ICL|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) | X-ray diffraction | 3.1 | 1996-11-15 | ||||
| 48 | 9ICP|1|T+ 9ICP|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) | X-ray diffraction | 3.1 | 1996-11-15 | ||||
| 49 | 7ICF|1|T+ 7ICF|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) (FOUR-DAY SOAK) | X-ray diffraction | 3.1 | 1996-11-15 | ||||
| 50 | 7ICU|1|T+ 7ICU|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) | X-ray diffraction | 3.3 | 1996-11-15 | ||||
| 51 | 7ICO|1|T+ 7ICO|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-ray diffraction | 3.3 | 1996-04-19 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3FL6|1|C+3FL6|1|D | Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) | X-RAY DIFFRACTION | 1.17 | 7 | B-form double helix,double helix,structure | |
| 2 | 3LLN|1|A+3LLN|1|B | Comparison between the orthorhombic an tetragonal form of the heptamer sequence d(GCG(xT)GCG)/d(CGCACGC). | X-RAY DIFFRACTION | 3 | 7 | double helix,structure | |
| 3 | 2QHB|1|C+2QHB|1|D | Crystal structure of NgTRF complexed with telomeric DNA | X-RAY DIFFRACTION | 2.4 | 7 | B-form double helix,double helix,structure | chromatin,structural,telomere |
| 4 | 2QHB|1|E+2QHB|1|F | Crystal structure of NgTRF complexed with telomeric DNA | X-RAY DIFFRACTION | 2.4 | 7 | B-form double helix,double helix,structure | chromatin,structural,telomere |
| 5 | 3Q8S|1|P | Human DNA polymerase iota incorporating dTTP opposite 8-oxo-guanine | X-RAY DIFFRACTION | 2.09 | 19 | enzyme,polymerase,transferase | |
| 6 | 3Q8P|1|P | Human DNA polymerase iota incorporating dCTP opposite 8-oxo-guanine | X-RAY DIFFRACTION | 1.95 | 18 | enzyme,polymerase,transferase | |
| 7 | 3Q8Q|1|P | Human DNA polymerase iota incorporating dATP opposite 8-oxo-guanine | X-RAY DIFFRACTION | 2.031 | 17 | double helix,structure | enzyme,polymerase,transferase |
| 8 | 3Q8R|1|P | Human DNA polymerase iota incorporating dGTP opposite 8-oxo-guanine | X-RAY DIFFRACTION | 2.45 | 21 | double helix,structure | enzyme,polymerase,transferase |
| 9 | 2WBS|1|F+2WBS|1|G | Crystal structure of the zinc finger domain of Klf4 bound to its target DNA | X-RAY DIFFRACTION | 1.7 | 7 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 10 | 9ICY|1|P+9ICY|1|T | DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NON GAPPED DNA ONLY) | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 11 | 7ICS|1|T+7ICS|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-RAY DIFFRACTION | 2.8 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 12 | 9ICW|1|T+9ICW|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; NATIVE STRUCTURE | X-RAY DIFFRACTION | 2.6 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 13 | 9ICR|1|T+9ICR|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 14 | 9ICU|1|T+9ICU|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 15 | 7ICN|1|T+7ICN|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF NICL2 | X-RAY DIFFRACTION | 2.8 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 16 | 7ICG|1|T+7ICG|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CDCL2 | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 17 | 9ICM|1|T+9ICM|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 18 | 7ICH|1|T+7ICH|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF COCL2 | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 19 | 7ICI|1|T+7ICI|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR) | X-RAY DIFFRACTION | 2.8 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 20 | 7ICP|1|T+7ICP|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR) | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 21 | 7ICQ|1|T+7ICQ|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 22 | 9ICK|1|T+9ICK|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR | X-RAY DIFFRACTION | 2.7 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 23 | 7ICK|1|T+7ICK|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF MGCL2 | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 24 | 7ICT|1|T+7ICT|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 AND MGCL2 | X-RAY DIFFRACTION | 2.8 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 25 | 9ICL|1|T+9ICL|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF PYROPHOSPHATE AND MNCL2 | X-RAY DIFFRACTION | 2.8 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 26 | 7ICE|1|T+7ICE|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CACL2 | X-RAY DIFFRACTION | 2.8 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 27 | 7ICV|1|T+7ICV|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND IN THE ABSENCE OF NACL | X-RAY DIFFRACTION | 2.8 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 28 | 9ICO|1|T+9ICO|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 29 | 9ICN|1|T+9ICN|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MGCL2 | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 30 | 9ICS|1|T+9ICS|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MNCL2 | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 31 | 7ICO|1|T+7ICO|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-RAY DIFFRACTION | 3.3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 32 | 7ICR|1|T+7ICR|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 33 | 9ICQ|1|T+9ICQ|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 34 | 7ICM|1|T+7ICM|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR) | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 35 | 9ICT|1|T+9ICT|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 36 | 7ICF|1|T+7ICF|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) (FOUR-DAY SOAK) | X-RAY DIFFRACTION | 3.1 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 37 | 7ICU|1|T+7ICU|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) | X-RAY DIFFRACTION | 3.3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 38 | 7ICL|1|T+7ICL|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) | X-RAY DIFFRACTION | 3.1 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 39 | 1S9B|1|A+1S9B|1|B | Crystal Structure Analysis of the B-DNA GAATTCG | X-RAY DIFFRACTION | 2.81 | 7 | B-form double helix,double helix,structure | |
| 40 | 9ICP|1|T+9ICP|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) | X-RAY DIFFRACTION | 3.1 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 41 | 2BZF|1|B+2BZF|1|C | Structural basis for DNA bridging by barrier-to-autointegration factor (BAF) | X-RAY DIFFRACTION | 2.87 | 7 | chromatin,nucleosome,structural | |
| 42 | 1FIU|1|K+1FIU|1|L+1FIU|1|G+1FIU|1|H | TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA | X-RAY DIFFRACTION | 1.6 | 7 | enzyme,hydrolase,nuclease | |
| 43 | 1FIU|1|I+1FIU|1|J+1FIU|1|E+1FIU|1|F | TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA | X-RAY DIFFRACTION | 1.6 | 7 | enzyme,hydrolase,nuclease | |
| 44 | 1XHV|1|E+1XHV|1|I+1XHV|1|H+1XHV|1|L | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-RAY DIFFRACTION | 2.5 | 7 | enzyme,hydrolase,nuclease | |
| 45 | 1XHU|1|E+1XHU|1|I+1XHU|1|H+1XHU|1|L | HincII bound to cleaved, cognate DNA containing GTCGAC | X-RAY DIFFRACTION | 2.95 | 7 | enzyme,hydrolase,nuclease | |
| 46 | 3E44|1|E+3E44|1|H | Q138F HincII bound to cleaved DNA (GTT | AAC) and Mn2+ | X-RAY DIFFRACTION | 2.52 | 7 | double helix,structure | enzyme,hydrolase,nuclease |
| 47 | 1XHU|1|G+1XHU|1|F | HincII bound to cleaved, cognate DNA containing GTCGAC | X-RAY DIFFRACTION | 2.95 | 7 | enzyme,hydrolase,nuclease | |
| 48 | 1XHV|1|G+1XHV|1|F | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-RAY DIFFRACTION | 2.5 | 7 | enzyme,hydrolase,nuclease | |
| 49 | 1XHV|1|K+1XHV|1|J | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-RAY DIFFRACTION | 2.5 | 7 | enzyme,hydrolase,nuclease | |
| 50 | 1XHU|1|K+1XHU|1|J | HincII bound to cleaved, cognate DNA containing GTCGAC | X-RAY DIFFRACTION | 2.95 | 7 | enzyme,hydrolase,nuclease | |
| 51 | 2PY5|1|L | Phi29 DNA polymerase complexed with single-stranded DNA | X-RAY DIFFRACTION | 1.6 | 7 | enzyme,polymerase,transferase |
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