Equivalence class DNA_3.0_39341.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3KK2|1|T+ 3KK2|1|P (rep) | 5'-D(*A*TP*GP*GP*TP*GP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3', 5'-D(*AP*CP*A*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*(DOC))-3' | HIV-1 reverse transcriptase-DNA complex with dATP bound in the nucleotide binding site | X-ray diffraction | 2.9 | 2010-03-23 | ||||
| 2 | 3JSM|1|T+ 3JSM|1|P | DNA (5'-D(*A*TP*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3'), DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(DDG))-3') | K65R mutant HIV-1 reverse transcriptase cross-linked to DS-DNA and complexed with tenofovir-diphosphate as the incoming nucleotide substrate | X-ray diffraction | 3 | 2009-09-29 | ||||
| 3 | 3KK1|1|T+ 3KK1|1|P | 5'-D(*A*TP*GP*GP*TP*GP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3', 5'-D(*AP*CP*A*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*(DOC))-3' | HIV-1 reverse transcriptase-DNA complex with nuceotide inhibitor GS-9148-diphosphate bound in nucleotide site | X-ray diffraction | 2.7 | 2010-03-23 | ||||
| 4 | 3KK3|1|T+ 3KK3|1|P | 5'-D(*AP*TP*GP*GP*TP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3', 5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*C*(URT))-3' | HIV-1 reverse transcriptase-DNA complex with GS-9148 terminated primer | X-ray diffraction | 2.9 | 2010-03-23 | ||||
| 5 | 3KLH|1|E+ 3KLH|1|F | DNA (5'-D(*AP*T*GP*CP*TP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3'), DNA (5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3') | Crystal structure of AZT-Resistant HIV-1 Reverse Transcriptase crosslinked to post-translocation AZTMP-Terminated DNA (COMPLEX P) | X-ray diffraction | 2.9 | 2010-09-22 | ||||
| 6 | 1N6Q|1|T+ 1N6Q|1|P | 5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3', 5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*AP*(ATM))-3' | HIV-1 Reverse Transcriptase Crosslinked to pre-translocation AZTMP-terminated DNA (complex N) | X-ray diffraction | 3 | 2003-01-14 | ||||
| 7 | 1T05|1|T+ 1T05|1|P | oligonucleotide template, oligonucleotide primer | HIV-1 reverse transcriptase crosslinked to template-primer with tenofovir-diphosphate bound as the incoming nucleotide substrate | X-ray diffraction | 3 | 2004-05-11 | ||||
| 8 | 1R0A|1|T+ 1R0A|1|P | 5'-D(*A*TP*GP*CP*AP*TP*CP*GP*GP*CP*GP*CP*TP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*GP*GP*T)-3', 5'-D(*C*CP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*AP*GP*CP*GP*CP*CP*GP*(2DA))-3' | Crystal structure of HIV-1 reverse transcriptase covalently tethered to DNA template-primer solved to 2.8 angstroms | X-ray diffraction | 2.8 | 2004-08-03 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3KK2|1|T+3KK2|1|P | HIV-1 reverse transcriptase-DNA complex with dATP bound in the nucleotide binding site | X-RAY DIFFRACTION | 2.9 | 27 | double helix,structure | enzyme,polymerase,transferase |
| 2 | 3KK1|1|T+3KK1|1|P | HIV-1 reverse transcriptase-DNA complex with nuceotide inhibitor GS-9148-diphosphate bound in nucleotide site | X-RAY DIFFRACTION | 2.7 | 27 | enzyme,polymerase,transferase | |
| 3 | 3KK3|1|T+3KK3|1|P | HIV-1 reverse transcriptase-DNA complex with GS-9148 terminated primer | X-RAY DIFFRACTION | 2.9 | 27 | enzyme,polymerase,transferase | |
| 4 | 1T05|1|T+1T05|1|P | HIV-1 reverse transcriptase crosslinked to template-primer with tenofovir-diphosphate bound as the incoming nucleotide substrate | X-RAY DIFFRACTION | 3 | 27 | double helix,structure | enzyme,polymerase,transferase |
| 5 | 3JSM|1|T+3JSM|1|P | K65R mutant HIV-1 reverse transcriptase cross-linked to DS-DNA and complexed with tenofovir-diphosphate as the incoming nucleotide substrate | X-RAY DIFFRACTION | 3 | 27 | double helix,structure | enzyme,polymerase,transferase |
| 6 | 3KLH|1|E+3KLH|1|F | Crystal structure of AZT-Resistant HIV-1 Reverse Transcriptase crosslinked to post-translocation AZTMP-Terminated DNA (COMPLEX P) | X-RAY DIFFRACTION | 2.9 | 27 | double helix,structure | antibody,enzyme,immune system,polymerase,regulatory,transferase |
| 7 | 1N6Q|1|T+1N6Q|1|P | HIV-1 Reverse Transcriptase Crosslinked to pre-translocation AZTMP-terminated DNA (complex N) | X-RAY DIFFRACTION | 3 | 27 | double helix,structure | antibody,enzyme,immune system,polymerase,regulatory,transferase |
| 8 | 1R0A|1|T+1R0A|1|P | Crystal structure of HIV-1 reverse transcriptase covalently tethered to DNA template-primer solved to 2.8 angstroms | X-RAY DIFFRACTION | 2.8 | 27 | double helix,structure | antibody,enzyme,immune system,polymerase,regulatory,transferase |
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