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Equivalence class DNA_3.0_28652.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13BSE|1|A+ 3BSE|1|B (rep)DNA (5'-D(*DA*DCP*DAP*DCP*DTP*DAP*DCP*DAP*DAP*DTP*DGP*DTP*DTP*DGP*DCP*DAP*DAP*DT)-3'), DNA (5'-D(*DG*DTP*DAP*DTP*DTP*DGP*DCP*DAP*DAP*DCP*DAP*DTP*DTP*DGP*DTP*DAP*DGP*DT)-3')Crystal structure analysis of a 16-base-pair B-DNAX-ray diffraction1.62008-12-23
23NCI|1|T+ 3NCI|1|PDNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3')RB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolutionX-ray diffraction1.792011-02-02
32W7N|1|E+ 2W7N|1|F+ 2W7N|1|G+ 2W7N|1|H5'-D(*AP*AP*TP*GP*TP*TP*TP*AP*GP*CP *TP*AP*AP*AP*CP*AP*AP*G)-3', 5'-D(*CP*BRUP*BRUP*GP*TP*TP*TP*AP*GP*CP*TP*AP *AP*AP*CP*AP*BRUP*T)-3'Escherichia coliCrystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene RegulationX-ray diffraction1.852009-02-17
41JX4|1|T+ 1JX4|1|P5'-D(*T*TP*CP*AP*TP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3'Crystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming NucleotideX-ray diffraction1.72001-10-05
53K57|1|T+ 3K57|1|PDNA (5'-D(*G*TP*AP*TP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*G)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3')Crystal structure of E.coli Pol II-normal DNA-dATP ternary complexX-ray diffraction2.082010-02-09
63NGI|1|T+ 3NGI|1|PDNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3')RB69 DNA Polymerase (Y567A) Ternary Complex with dTTP Opposite dGX-ray diffraction1.8862011-01-26
72OG0|1|C+ 2OG0|1|D5'-D(*GP*TP*AP*TP*TP*AP*TP*GP*TP*AP*GP*TP*CP*TP*GP*TP*TP*T)-3', 5'-D(*AP*AP*AP*CP*AP*GP*AP*CP*TP*AP*CP*AP*TP*AP*AP*TP*AP*C)-3'Crystal Structure of the Lambda Xis-DNA complexX-ray diffraction1.92007-03-13
83NDK|1|T+ 3NDK|1|PDNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3')RB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dGX-ray diffraction22011-01-26
93NAE|1|T+ 3NAE|1|PDNA (5'-D(*TP*CP*AP*(G35)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3')RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite GuanidinohydantoinX-ray diffraction2.0032010-09-15
103CFP|1|T+ 3CFP|1|PDNA (5'-D(*DAP*DCP*DAP*DGP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*DCP*(DOC))-3')Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 1X-ray diffraction2.52009-03-10
111S9F|1|I+ 1S9F|1|E5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3'DPO with AT matchedX-ray diffraction22005-02-15
121S9F|1|J+ 1S9F|1|F5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3'DPO with AT matchedX-ray diffraction22005-02-15
131S9F|1|K+ 1S9F|1|G5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3'DPO with AT matchedX-ray diffraction22005-02-15
141S9F|1|L+ 1S9F|1|H5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3'DPO with AT matchedX-ray diffraction22005-02-15
153NE6|1|T+ 3NE6|1|PDNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3')RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dCTP Opposite dGX-ray diffraction2.0012011-01-26
161RYS|1|D+ 1RYS|1|C5'-D(*TP*CP*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*A)-3'REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONX-ray diffraction2.032004-02-10
171RYS|1|F+ 1RYS|1|E5'-D(*TP*CP*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*A)-3'REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONX-ray diffraction2.032004-02-10
182JEJ|1|T+ 2JEJ|1|P5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*CP*G)-3'The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-ray diffraction1.862007-03-13
191WB9|1|E+ 1WB9|1|F5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3', 5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3'Crystal Structure of E. coli DNA Mismatch Repair enzyme MutS, E38T mutant, in complex with a G.T mismatchX-ray diffraction2.12006-01-18
203DW9|1|E+ 3DW9|1|FDNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3')SgrAI with cognate DNA and manganese boundX-ray diffraction2.22008-08-19
212XC9|1|T+ 2XC9|1|P5'-D(*TP*CP*AP*CP*GNEP*GP*AP*AP*TP*CP*CP*TP*TP* CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*G)-3'synthetic constructBINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, N2-ETHENOGUANINE MODIFIED DNA, MAGNESIUM FORMX-ray diffraction2.22010-09-08
223DVO|1|E+ 3DVO|1|FDNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3')synthetic constructSgrAI with cognate DNA and calcium boundX-ray diffraction1.8922008-08-19
233DVO|1|G+ 3DVO|1|HDNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3')synthetic constructSgrAI with cognate DNA and calcium boundX-ray diffraction1.8922008-08-19
243M9N|1|T+ 3M9N|1|PDNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*AP*AP*GP*C)-3')Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-ray diffraction1.932010-06-16
253L8B|1|C+ 3L8B|1|DDNA (5'-D(*AP*C*TP*(G35)P*TP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*A)-3')Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoinX-ray diffraction2.152010-03-09
263L8B|1|E+ 3L8B|1|FDNA (5'-D(*AP*C*TP*(G35)P*TP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*A)-3')Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoinX-ray diffraction2.152010-03-09
272BQ3|1|T+ 2BQ3|1|P5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3'DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-ray diffraction22005-06-22
282UVV|1|T+ 2UVV|1|P5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3'Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-ray diffraction2.22007-05-08
293OSN|1|B+ 3OSN|1|C5'-D(*TP*CP*TP*(6OG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3'Structural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase IotaX-ray diffraction1.92010-10-20
302C28|1|T+ 2C28|1|P5'-D(TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP*TP *TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3'Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-ray diffraction2.272005-11-29
312UVW|1|T+ 2UVW|1|P5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3'Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-ray diffraction2.092007-05-08
322W9B|1|E+ 2W9B|1|C5'-D(*TP*CP*AP*TP*M2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOCP)-3'Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNAX-ray diffraction2.282009-05-12
332W9B|1|F+ 2W9B|1|D5'-D(*TP*CP*AP*TP*M2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOCP)-3'Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNAX-ray diffraction2.282009-05-12
343LZI|1|T+ 3LZI|1|PDNA (5'-D(P*TP*CP*AP*(8OG)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3')RB69 DNA Polymerase (Y567A) ternary complex with dATP Opposite 7,8-dihydro-8-oxoguanineX-ray diffraction2.32010-05-12
352P5L|1|A+ 2P5L|1|BDNA (5'-D(*DCP*DAP*DTP*DGP*DAP*DAP*DTP*DAP*DAP*DAP*DAP*DAP*DTP*DTP*DCP*DAP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DTP*DGP*DAP*DAP*DTP*DTP*DTP*DTP*DTP*DAP*DTP*DTP*DCP*DAP*DTP*DG)-3')Crystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator siteX-ray diffraction2.852008-03-11
362P5L|1|E+ 2P5L|1|FDNA (5'-D(*DCP*DAP*DTP*DGP*DAP*DAP*DTP*DAP*DAP*DAP*DAP*DAP*DTP*DTP*DCP*DAP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DTP*DGP*DAP*DAP*DTP*DTP*DTP*DTP*DTP*DAP*DTP*DTP*DCP*DAP*DTP*DG)-3')Crystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator siteX-ray diffraction2.852008-03-11
373NHG|1|T+ 3NHG|1|PDNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3')RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dTTP Opposite dGX-ray diffraction2.52011-01-26
382BQU|1|T+ 2BQU|1|P5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3'DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-ray diffraction2.52005-06-23
393K5L|1|T+ 3K5L|1|PDNA (5'-D(*TP*AP*TP*(3DR)P*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3')Crystal structure of E.coli Pol II-abasic DNA-dATP Lt(0, 3) ternary complexX-ray diffraction2.72010-02-02
402JEF|1|T+ 2JEF|1|P5'-D(*TP*CP*AP*CP*BZGP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*DOC)-3'The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect PairingX-ray diffraction2.172007-03-13
412BR0|1|T+ 2BR0|1|P5'-D(*TP*CP*AP*CP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3'DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-ray diffraction2.172005-06-23
422BQR|1|T+ 2BQR|1|P5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3'DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-ray diffraction2.372005-06-23
431B3T|1|C+ 1B3T|1|DDNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*AP*TP*AP*TP*GP*CP*TP*TP*CP*CP*C)-3')EBNA-1 NUCLEAR PROTEIN/DNA COMPLEXX-ray diffraction2.21998-12-15
442JEG|1|T+ 2JEG|1|P5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3'The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-ray diffraction2.382007-03-13
452JEI|1|T+ 2JEI|1|P5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*T)-3'The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-ray diffraction2.392007-03-13
463PR5|1|TDNA (5'-D(*TP*TP*CP*AP*TP*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')Dpo4 Y12A mutant incorporating ADP opposite template dTX-ray diffraction2.42011-02-23
473GIJ|1|E+ 3GIJ|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairsX-ray diffraction2.42009-05-19
483GIJ|1|J+ 3GIJ|1|H5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairsX-ray diffraction2.42009-05-19
492W9A|1|T+ 2W9A|1|P5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3'Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dGTPX-ray diffraction2.62009-05-12
502J6U|1|T+ 2J6U|1|P5'-D(*TP*CP*AP*C G32P*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*T)-3'synthetic constructTernary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dGTP.X-ray diffraction2.52006-11-22
512XCA|1|T+ 2XCA|1|P5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP*TP*CP* CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*DOC)-3'synthetic constructTERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dGTP - MAGNESIUM FORMX-ray diffraction2.52010-09-08
522DTU|1|E+ 2DTU|1|F5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3'Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-ray diffraction2.372006-12-05
532DTU|1|G+ 2DTU|1|H5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3'Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-ray diffraction2.372006-12-05
542DTU|1|I+ 2DTU|1|J5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3'Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-ray diffraction2.372006-12-05
552DTU|1|K+ 2DTU|1|L5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3'Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-ray diffraction2.372006-12-05
562C22|1|T+ 2C22|1|P5'-D(TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP*TP *TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3'Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-ray diffraction2.562005-11-29
571WBD|1|E+ 1WBD|1|F5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3', 5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3'Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38Q mutant, in complex with a G.T mismatchX-ray diffraction2.42006-01-18
581S97|1|I+ 1S97|1|E5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3'DPO4 with GT mismatchX-ray diffraction2.42004-04-27
591S97|1|J+ 1S97|1|F5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3'DPO4 with GT mismatchX-ray diffraction2.42004-04-27
601S97|1|K+ 1S97|1|G5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3'DPO4 with GT mismatchX-ray diffraction2.42004-04-27
611S97|1|L+ 1S97|1|H5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3'DPO4 with GT mismatchX-ray diffraction2.42004-04-27
621R0O|1|C+ 1R0O|1|DEcdysone Response ElementCrystal Structure of the Heterodimeric Ecdysone Receptor DNA-binding ComplexX-ray diffraction2.242003-10-21
632BNZ|1|E+ 2BNZ|1|F5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*GP *TP*GP*AP*TP*TP*AP*GP*C)-3', 5'-D(*CP*TP*AP*AP*TP*CP*AP*CP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3'synthetic constructStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeatsX-ray diffraction2.62006-03-15
641IG9|1|T+ 1IG9|1|P5'-D(*AP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*(DOC))-3'Structure of the Replicating Complex of a Pol Alpha Family DNA PolymeraseX-ray diffraction2.62001-06-11
653PR4|1|TDNA (5'-D(*TP*TP*CP*AP*TP*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')Dpo4 Y12A mutant incorporating dADP opposite template dTX-ray diffraction2.652011-02-23
661WBB|1|E+ 1WBB|1|F5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3', 5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3'Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38A mutant, in complex with a G.T mismatchX-ray diffraction2.52006-01-18
672UVU|1|T+ 2UVU|1|P5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3'Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-ray diffraction2.72007-05-08
683GIL|1|E+ 3GIL|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3'Dpo4 extension ternary complex with oxoG(anti)-T(anti) pairX-ray diffraction2.712009-05-19
693GIL|1|J+ 3GIL|1|H5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3'Dpo4 extension ternary complex with oxoG(anti)-T(anti) pairX-ray diffraction2.712009-05-19
703EPI|1|B+ 3EPI|1|C5'-D(*DTP*DCP*DTP*(2EG)P*DGP*DGP*DGP*DTP*DCP*DCP*DTP*DAP*DGP*DGP*DAP*DCP*DCP*(DOC))-3'Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine and incoming TTPX-ray diffraction2.92008-12-16
712CAX|1|U+ 2CAX|1|Y5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*GP *TP*CP*AP*CP*AP*AP*GP*C)-3', 5'-D(*CP*TP*TP*GP*TP*GP*AP*CP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3'STRUCTURAL BASIS FOR COOPERATIVE BINDING OF RIBBON-HELIX-HELIX REPRESSOR OMEGA TO MUTATED DIRECT DNA HEPTAD REPEATSX-ray diffraction2.92006-03-15
723CFR|1|T+ 3CFR|1|PDNA (5'-D(*DTP*DCP*DAP*DAP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*(DOC))-3')Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 2X-ray diffraction2.42009-03-10
732XCP|1|F+ 2XCP|1|E5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP *TP*DOC)-3'TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORMX-ray diffraction2.62010-09-08
742XCP|1|T+ 2XCP|1|P5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP *TP*DOC)-3'TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORMX-ray diffraction2.62010-09-08
752J6T|1|T+ 2J6T|1|P5'-D(*TP*CP*AP*TP*XP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3'Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.X-ray diffraction2.62006-11-22
762VA2|1|D+ 2VA2|1|C5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*A)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction2.82007-10-30
772VA2|1|F+ 2VA2|1|E5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*A)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction2.82007-10-30
782BNW|1|E+ 2BNW|1|F5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*AP *TP*CP*AP*CP*AP*AP*GP*C)-3', 5'-D(*CP*TP*TP*GP*TP*GP*AP*TP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3'synthetic constructStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeatsX-ray diffraction2.452006-03-15
792BNW|1|G+ 2BNW|1|H5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*AP *TP*CP*AP*CP*AP*AP*GP*C)-3', 5'-D(*CP*TP*TP*GP*TP*GP*AP*TP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3'synthetic constructStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeatsX-ray diffraction2.452006-03-15
803MKW|1|T+ 3MKW|1|UDNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')Structure of sopB(155-272)-18mer complex, I23 formX-ray diffraction2.992010-05-05
813CQ8|1|T+ 3CQ8|1|PDNA (5'-D(*DAP*DCP*DAP*DGP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*DCP*DC)-3')Ternary complex of the L415F mutant RB69 exo(-)polymeraseX-ray diffraction2.52008-09-02
822J6S|1|T+ 2J6S|1|P5'-D(*TP*CP*AP*TP*XP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3'Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.X-ray diffraction2.52006-11-22
832OZS|1|T+ 2OZS|1|PTemplate DNA, Primer DNACrystal structure of RB69 gp43 in complex with DNA with dATP opposite dTMPX-ray diffraction2.752007-10-23
842C2D|1|T+ 2C2D|1|P5'-D(*TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3'synthetic constructEfficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-ray diffraction2.572005-11-29
851P8K|1|A+ 1P8K|1|C+ 1P8K|1|D+ 1P8K|1|B5'-D(P*GP*CP*GP*CP*GP*CP*TP*GP*AP*GP*GP*AP*GP*GP*TP*TP*TP*C)-3', 5'-D(P*TP*CP*TP*GP*TP*AP*AP*AP*GP*CP*GP*CP*A)-3', 5'-D(P*GP*CP*GP*CP*TP*TP*TP*AP*CP*AP*GP*AP*GP*AP*AP*A)-3', 5'-D(P*CP*CP*TP*CP*CP*TP*CP*AP*GP*CP*GP*CP*GP*CP*T)-3'The structure and DNA recognition of a bifunctional homing endonuclease and group I intron splicing factorX-ray diffraction2.62004-01-20
862IVH|1|B+ 2IVH|1|C5'-D(*GP*GP*AP*AP*TP*TP*CP*GP*AP*TP *CP*GP*AP*AP*TP*TP*CP*C)-3'Escherichia coliCrystal structure of the nuclease domain of ColE7 (H545Q mutant) in complex with an 18-bp duplex DNAX-ray diffraction2.82007-01-02
873EPG|1|B+ 3EPG|1|C5'-D(*DTP*DCP*DTP*(2EG)P*DGP*DGP*DGP*DTP*DCP*DCP*DTP*DAP*DGP*DGP*DAP*DCP*DCP*(DOC))-3'Structure of Human DNA Polymerase Iota complexed with N2-ethylguanineX-ray diffraction2.52008-12-16
882V4R|1|T+ 2V4R|1|P5'-D(*TP*CP*AP*CP*M1GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'synthetic constructNon-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosineX-ray diffraction2.52009-06-16
891Q9X|1|E+ 1Q9X|1|I5'-GCGGACTGCTTAC(dideoxycytidine)-3', 5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3'Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-ray diffraction2.692004-04-27
901Q9X|1|F+ 1Q9X|1|J5'-GCGGACTGCTTAC(dideoxycytidine)-3', 5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3'Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-ray diffraction2.692004-04-27
911Q9X|1|G+ 1Q9X|1|K5'-GCGGACTGCTTAC(dideoxycytidine)-3', 5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3'Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-ray diffraction2.692004-04-27
921Q9X|1|H+ 1Q9X|1|L5'-GCGGACTGCTTAC(dideoxycytidine)-3', 5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3'Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-ray diffraction2.692004-04-27
931KB6|1|C+ 1KB6|1|D5'-D(*CP*AP*CP*GP*GP*GP*TP*GP*AP*AP*TP*GP*AP*GP*GP*AP*CP*A)-3', 5'-D(*TP*GP*TP*CP*CP*TP*CP*AP*TP*TP*CP*AP*CP*CP*CP*GP*TP*G)-3'Crystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin (OC) Response ElementX-ray diffraction2.72002-05-03
943GIM|1|E+ 3GIM|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DDG))-3'Dpo4 extension ternary complex with oxoG(anti)-G(syn) pairX-ray diffraction2.72009-05-19
953FBD|1|B+ 3FBD|1|C5'-D(*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DAP*DTP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DC)-3'Crystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNAX-ray diffraction2.92009-11-03
963FBD|1|E+ 3FBD|1|F5'-D(*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DAP*DTP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DC)-3'Crystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNAX-ray diffraction2.92009-11-03
973LZJ|1|T+ 3LZJ|1|PDNA (5'-D(P*TP*CP*AP*(8OG)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3')RB69 DNA Polymerase (Y567A) ternary complex with dCTP Opposite 7,8-Dihydro-8-oxoguanineX-ray diffraction2.052010-05-19
981KB4|1|C+ 1KB4|1|D5'-D(*CP*AP*CP*AP*GP*GP*TP*CP*AP*CP*GP*AP*AP*GP*GP*TP*CP*A)-3', 5'-D(*TP*GP*AP*CP*CP*TP*TP*CP*GP*TP*GP*AP*CP*CP*TP*GP*TP*G)-3'Crystal Structure of VDR DNA-binding Domain Bound to a Canonical Direct Repeat with Three Base Pair Spacer (DR3) Response ElementX-ray diffraction2.82002-05-03
993MKZ|1|C+ 3MKZ|1|DDNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')Structure of SopB(155-272)-18mer complex, P21 formX-ray diffraction2.982010-05-05
1002VA3|1|T+ 2VA3|1|P5'-D(*TP*TP*CP*AP*DFTP*TP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*A)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction2.982007-10-30
1011S0N|1|T+ 1S0N|1|P5'-D(*TP*AP*CP*GP*AP*CP*GP*TP*GP*AP*TP*CP*AP*GP*TP*GP*CP*C)-3', 5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*AP*CP*G)-3'Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshiftX-ray diffraction2.82004-03-30
1021Q9Y|1|T+ 1Q9Y|1|P5'-AC(8-OXOGUANOSINE)GGTAAGCAGTCCGCG-3', 5'-GCGGACTGCTTAC(DIDEOXYCYTIDINE)-3'CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNAX-ray diffraction2.82004-04-27
1033MKZ|1|Y+ 3MKZ|1|ZDNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')Structure of SopB(155-272)-18mer complex, P21 formX-ray diffraction2.982010-05-05
1042DY4|1|E+ 2DY4|1|F5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3'Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-ray diffraction2.652007-01-09
1052DY4|1|G+ 2DY4|1|H5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3'Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-ray diffraction2.652007-01-09
1062DY4|1|I+ 2DY4|1|J5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3'Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-ray diffraction2.652007-01-09
1072DY4|1|K+ 2DY4|1|L5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3'Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-ray diffraction2.652007-01-09
1082NL8|1|W18-nt PEN element of the SV40 DNA originThe origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)X-ray diffraction2.32006-12-12
1092OZM|1|T+ 2OZM|1|PTemplate DNA, Primer DNACrystal structure of RB69 gp43 in complex with DNA with 5-NITP opposite an abasic site analogX-ray diffraction2.862007-10-23
1103MKY|1|T+ 3MKY|1|UDNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')Structure of SopB(155-323)-18mer DNA complex, I23 formX-ray diffraction2.862010-05-05
1112UVR|1|T+ 2UVR|1|P5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3'Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-ray diffraction2.92007-05-08
1121R0N|1|C+ 1R0N|1|DEcdsyone Response Element, Ecdysone Response ElementCrystal Structure of Heterodimeric Ecdsyone receptor DNA binding complexX-ray diffraction2.62003-10-21
1133NGD|1|C+ 3NGD|1|D5'-D(*TP*CP*TP*(6OG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3'Structural Basis for Proficient Incorporation of dTTP Opposite O6-methylguanine by Human DNA Polymerase IotaX-ray diffraction2.82010-10-20
1142W8L|1|T+ 2W8L|1|P5'-D(*TP*CP*AP*CP*N2GP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3'Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in anti orientationX-ray diffraction32009-01-27
1151KB2|1|C+ 1KB2|1|D5'-D(*CP*AP*CP*GP*GP*TP*TP*CP*AP*CP*GP*AP*GP*GP*TP*TP*CP*A)-3', 5'-D(*TP*GP*AP*AP*CP*CP*TP*CP*GP*TP*GP*AP*AP*CP*CP*GP*TP*G)-3'Crystal Structure of VDR DNA-binding Domain Bound to Mouse Osteopontin (SPP) Response ElementX-ray diffraction2.72002-05-03
1163GIK|1|E+ 3GIK|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3'Dpo4 extension ternary complex with the oxoG(anti)-C(anti) pairX-ray diffraction2.92009-05-19
1172W9C|1|E+ 2W9C|1|C5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*DOCP)-3'Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTPX-ray diffraction2.92009-05-12
1182W9C|1|F+ 2W9C|1|D5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*DOCP)-3'Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTPX-ray diffraction2.92009-05-12
1192P5O|1|E+ 2P5O|1|FTemplate DNA, Primer DNACrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-ray diffraction2.82007-04-03
1202P5O|1|G+ 2P5O|1|HTemplate DNA, Primer DNACrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-ray diffraction2.82007-04-03
1212P5O|1|I+ 2P5O|1|JTemplate DNA, Primer DNACrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-ray diffraction2.82007-04-03
1222P5O|1|K+ 2P5O|1|LTemplate DNA, Primer DNACrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-ray diffraction2.82007-04-03
1232V9W|1|D+ 2V9W|1|C5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*G)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction32007-10-30
1241H0M|1|E+ 1H0M|1|F5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)-3'synthetic constructThree-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNAX-ray diffraction32002-08-29
1252V9W|1|F+ 2V9W|1|E5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*G)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction32007-10-30
1261H0M|1|G+ 1H0M|1|H5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)-3'synthetic constructThree-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNAX-ray diffraction32002-08-29
1273LDS|1|T+ 3LDS|1|PDNA (5'-D(*CP*AP*(8OG)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*(DDG))-3')Crystal structure of RB69 gp43 with DNA and dATP opposite 8-oxoGX-ray diffraction32010-06-02
1281BF5|1|BDNA (5'-D(*AP*CP*AP*GP*TP*TP*TP*CP*CP*CP*GP*TP*AP*AP*AP*TP*G P*C)-3')Homo sapiensTYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEXX-ray diffraction2.91998-08-12
1291BF5|1|CDNA (5'-D(*TP*GP*CP*AP*TP*TP*TP*AP*CP*GP*GP*GP*AP*AP*AP*CP*T P*G)-3')TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEXX-ray diffraction2.91998-08-12
1302C2R|1|T+ 2C2R|1|P5'-D(*TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3'Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-ray diffraction2.552005-11-29
1311YNW|1|C+ 1YNW|1|D5'-d(*TP*TP*AP*GP*GP*TP*CP*AP*CP*GP*AP*AP*GP*GP*TP*CP*AP*A)-3', 5'-d(*TP*TP*TP*GP*AP*CP*CP*TP*TP*CP*GP*TP*GP*AP*CP*CP*TP*A)-3'Crystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response ElementX-ray diffraction32005-02-15
1323M9M|1|T+ 3M9M|1|PDNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*AP*AP*G)-3')Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-ray diffraction2.92010-06-16
1332NLL|1|C+ 2NLL|1|DDNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*TP*TP*(5IU)P*CP*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*GP*AP*AP*AP*TP*GP*AP*CP*CP*T P*G)-3')RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNAX-ray diffraction1.91997-03-12
1343G6P|1|C+ 3G6P|1|DDNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*TP*G)-3')GR DNA binding domain:FKBP5 complex, 18bpX-ray diffraction1.9852009-04-21
1351NLW|1|F+ 1NLW|1|G5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3'Crystal structure of Mad-Max recognizing DNAX-ray diffraction22003-02-04
1361NLW|1|H+ 1NLW|1|J5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3'Crystal structure of Mad-Max recognizing DNAX-ray diffraction22003-02-04
1371BG1|1|BDNA (5'-D(*TP*GP*CP*AP*TP*TP*TP*CP*CP*CP*GP*TP*AP*AP*AP*TP*CP*T)-3')TRANSCRIPTION FACTOR STAT3B/DNA COMPLEXX-ray diffraction2.251999-01-13
1383G6R|1|C+ 3G6R|1|DDNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*TP*G)-3')GR DNA binding domain:FKBP5 complex-52, 18bpX-ray diffraction2.32009-04-21
1393G9J|1|C+ 3G9J|1|DDNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*TP*CP*TP*G)-3')GR DNA binding domain:Pal, 18bp complex-36X-ray diffraction2.322009-04-21
1401HCQ|1|C+ 1HCQ|1|DDNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*AP*GP*TP*GP*AP*CP*CP*T P*G)-3'), DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*TP*GP*TP*GP*AP*CP*CP*T P*G)-3')THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTSX-ray diffraction2.41995-11-23
1411HCQ|1|G+ 1HCQ|1|HDNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*AP*GP*TP*GP*AP*CP*CP*T P*G)-3'), DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*TP*GP*TP*GP*AP*CP*CP*T P*G)-3')THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTSX-ray diffraction2.41995-11-23
1422C7A|1|C+ 2C7A|1|D5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*TP *TP*TP*GP*TP*TP*CP*TP*G)-3', 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*AP*AP *CP*TP*GP*TP*TP*CP*TP*G)-3'Homo sapiensSTRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEXX-ray diffraction2.52006-08-30
1431DCT|1|F+ 1DCT|1|MDNA (5'-D(*AP*CP*CP*AP*GP*CP*AP*GP*GP*(C49)P*CP*AP*CP*CP*AP*GP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*TP*GP*GP*(C5M)P*CP*TP*GP*CP*TP*GP*G)-3')DNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNAX-ray diffraction2.81995-09-15
1441DCT|1|G+ 1DCT|1|NDNA (5'-D(*AP*CP*CP*AP*GP*CP*AP*GP*GP*(C49)P*CP*AP*CP*CP*AP*GP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*TP*GP*GP*(C5M)P*CP*TP*GP*CP*TP*GP*G)-3')DNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNAX-ray diffraction2.81995-09-15
1451CGP|1|C+ 1CGP|1|E+ 1CGP|1|D+ 1CGP|1|FDNA (5'-D(*GP*CP*GP*AP*AP*AP*AP*GP*TP*GP*TP*GP*AP*CP*AP*TP*AP*T)-3'), DNA (5'-D(*GP*TP*CP*AP*CP*AP*CP*TP*TP*TP*TP*CP*G)-3')synthetic constructCATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATEX-ray diffraction31994-01-31

Release history

Release0.70.80.90.100.110.12
Date2011-03-122011-03-192011-03-262011-04-022011-04-092011-04-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
1
2OZS|1|T+2OZS|1|P		Crystal structure of RB69 gp43 in complex with DNA with dATP opposite dTMPX-RAY DIFFRACTION2.7518B-form double helix,double helix,structureenzyme,polymerase,transferase
2
2BNW|1|E+2BNW|1|F		Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeatsX-RAY DIFFRACTION2.4518DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
3
3FBD|1|B+3FBD|1|C		Crystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNAX-RAY DIFFRACTION2.918B-form double helix,double helix,structureenzyme,hydrolase,nuclease
4
3MKY|1|T+3MKY|1|U		Structure of SopB(155-323)-18mer DNA complex, I23 formX-RAY DIFFRACTION2.8618B-form double helix,double helix,structurecentromere,chromatin,structural
5
1KB6|1|C+1KB6|1|D		Crystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin (OC) Response ElementX-RAY DIFFRACTION2.718B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
6
2DTU|1|E+2DTU|1|F		Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.3718B-form double helix,double helix,structureenzyme,polymerase,transferase
7
3PR5|1|T		Dpo4 Y12A mutant incorporating ADP opposite template dTX-RAY DIFFRACTION2.424B-form double helix,double helix,structureenzyme,polymerase,transferase
8
3DVO|1|E+3DVO|1|F		SgrAI with cognate DNA and calcium boundX-RAY DIFFRACTION1.89218B-form double helix,double helix,structureenzyme,hydrolase,nuclease
9
2BNZ|1|E+2BNZ|1|F		Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeatsX-RAY DIFFRACTION2.618DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
10
3GIK|1|E+3GIK|1|D		Dpo4 extension ternary complex with the oxoG(anti)-C(anti) pairX-RAY DIFFRACTION2.918B-form double helix,double helix,structureenzyme,polymerase,transferase
11
1S9F|1|I+1S9F|1|E		DPO with AT matchedX-RAY DIFFRACTION218B-form double helix,double helix,structureenzyme,polymerase,transferase
12
1P8K|1|A+1P8K|1|C+1P8K|1|D+1P8K|1|B		The structure and DNA recognition of a bifunctional homing endonuclease and group I intron splicing factorX-RAY DIFFRACTION2.618B-form double helix,double helix,structureenzyme,hydrolase,nuclease
13
1Q9X|1|F+1Q9X|1|J		Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-RAY DIFFRACTION2.6918double helix,structureenzyme,polymerase,transferase
14
3G9J|1|C+3G9J|1|D		GR DNA binding domain:Pal, 18bp complex-36X-RAY DIFFRACTION2.3218B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
15
2DTU|1|G+2DTU|1|H		Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.3718B-form double helix,double helix,structureenzyme,polymerase,transferase
16
2JEI|1|T+2JEI|1|P		The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-RAY DIFFRACTION2.3918B-form double helix,double helix,structureenzyme,polymerase,transferase
17
2UVR|1|T+2UVR|1|P		Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-RAY DIFFRACTION2.918B-form double helix,double helix,structureenzyme,polymerase,transferase
18
2V4R|1|T+2V4R|1|P		Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosineX-RAY DIFFRACTION2.518B-form double helix,double helix,structureenzyme,polymerase,transferase
19
2NLL|1|C+2NLL|1|D		RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNAX-RAY DIFFRACTION1.918B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
20
1HCQ|1|C+1HCQ|1|D		THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTSX-RAY DIFFRACTION2.418B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
21
1KB4|1|C+1KB4|1|D		Crystal Structure of VDR DNA-binding Domain Bound to a Canonical Direct Repeat with Three Base Pair Spacer (DR3) Response ElementX-RAY DIFFRACTION2.818B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
22
1KB2|1|C+1KB2|1|D		Crystal Structure of VDR DNA-binding Domain Bound to Mouse Osteopontin (SPP) Response ElementX-RAY DIFFRACTION2.718B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
23
3EPI|1|B+3EPI|1|C		Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine and incoming TTPX-RAY DIFFRACTION2.918double helix,structureenzyme,polymerase,transferase
24
3NCI|1|T+3NCI|1|P		RB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolutionX-RAY DIFFRACTION1.7918B-form double helix,double helix,structureenzyme,polymerase,transferase
25
2C28|1|T+2C28|1|P		Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-RAY DIFFRACTION2.2718B-form double helix,double helix,structureenzyme,polymerase,transferase
26
3NGD|1|C+3NGD|1|D		Structural Basis for Proficient Incorporation of dTTP Opposite O6-methylguanine by Human DNA Polymerase IotaX-RAY DIFFRACTION2.818enzyme,polymerase,transferase
27
3L8B|1|E+3L8B|1|F		Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoinX-RAY DIFFRACTION2.1518B-form double helix,double helix,structureenzyme,polymerase,transferase
28
1B3T|1|C+1B3T|1|D		EBNA-1 NUCLEAR PROTEIN/DNA COMPLEXX-RAY DIFFRACTION2.218B-form double helix,double helix,structureregulatory,transcription
29
2XC9|1|T+2XC9|1|P		BINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, N2-ETHENOGUANINE MODIFIED DNA, MAGNESIUM FORMX-RAY DIFFRACTION2.218B-form double helix,double helix,structureenzyme,polymerase,transferase
30
1Q9X|1|E+1Q9X|1|I		Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-RAY DIFFRACTION2.6918double helix,structureenzyme,polymerase,transferase
31
2C7A|1|C+2C7A|1|D		STRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEXX-RAY DIFFRACTION2.518B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
32
2VA2|1|F+2VA2|1|E		Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION2.818B-form double helix,double helix,structureenzyme,polymerase,transferase
33
3GIL|1|J+3GIL|1|H		Dpo4 extension ternary complex with oxoG(anti)-T(anti) pairX-RAY DIFFRACTION2.7118B-form double helix,double helix,structureenzyme,polymerase,transferase
34
1S97|1|I+1S97|1|E		DPO4 with GT mismatchX-RAY DIFFRACTION2.418B-form double helix,double helix,structureenzyme,polymerase,transferase
35
2CAX|1|U+2CAX|1|Y		STRUCTURAL BASIS FOR COOPERATIVE BINDING OF RIBBON-HELIX-HELIX REPRESSOR OMEGA TO MUTATED DIRECT DNA HEPTAD REPEATSX-RAY DIFFRACTION2.918DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
36
2BQR|1|T+2BQR|1|P		DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-RAY DIFFRACTION2.3718B-form double helix,double helix,structureenzyme,polymerase,transferase
37
1Q9Y|1|T+1Q9Y|1|P		CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNAX-RAY DIFFRACTION2.818B-form double helix,double helix,structureenzyme,polymerase,transferase
38
2DTU|1|K+2DTU|1|L		Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.3718B-form double helix,double helix,structureenzyme,polymerase,transferase
39
1Q9X|1|H+1Q9X|1|L		Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-RAY DIFFRACTION2.6918double helix,structureenzyme,polymerase,transferase
40
3DVO|1|G+3DVO|1|H		SgrAI with cognate DNA and calcium boundX-RAY DIFFRACTION1.89218B-form double helix,double helix,structureenzyme,hydrolase,nuclease
41
2C22|1|T+2C22|1|P		Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-RAY DIFFRACTION2.5618B-form double helix,double helix,structureenzyme,polymerase,transferase
42
2VA2|1|D+2VA2|1|C		Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION2.818B-form double helix,double helix,structureenzyme,polymerase,transferase
43
2W9A|1|T+2W9A|1|P		Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dGTPX-RAY DIFFRACTION2.618B-form double helix,double helix,structureenzyme,polymerase,transferase
44
3FBD|1|E+3FBD|1|F		Crystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNAX-RAY DIFFRACTION2.918B-form double helix,double helix,structureenzyme,hydrolase,nuclease
45
1NLW|1|H+1NLW|1|J		Crystal structure of Mad-Max recognizing DNAX-RAY DIFFRACTION218B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription
46
1S9F|1|K+1S9F|1|G		DPO with AT matchedX-RAY DIFFRACTION218B-form double helix,double helix,structureenzyme,polymerase,transferase
47
3LDS|1|T+3LDS|1|P		Crystal structure of RB69 gp43 with DNA and dATP opposite 8-oxoGX-RAY DIFFRACTION318B-form double helix,double helix,structureenzyme,polymerase,transferase
48
1HCQ|1|G+1HCQ|1|H		THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTSX-RAY DIFFRACTION2.418B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
49
1RYS|1|F+1RYS|1|E		REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONX-RAY DIFFRACTION2.0318B-form double helix,double helix,structureenzyme,polymerase,transferase
50
3CQ8|1|T+3CQ8|1|P		Ternary complex of the L415F mutant RB69 exo(-)polymeraseX-RAY DIFFRACTION2.518B-form double helix,double helix,structureenzyme,polymerase,transferase
51
2DTU|1|I+2DTU|1|J		Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.3718B-form double helix,double helix,structureenzyme,polymerase,transferase
52
2C2D|1|T+2C2D|1|P		Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-RAY DIFFRACTION2.5718B-form double helix,double helix,structureenzyme,polymerase,transferase
53
3GIL|1|E+3GIL|1|D		Dpo4 extension ternary complex with oxoG(anti)-T(anti) pairX-RAY DIFFRACTION2.7118B-form double helix,double helix,structureenzyme,polymerase,transferase
54
3GIJ|1|E+3GIJ|1|D		Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairsX-RAY DIFFRACTION2.418B-form double helix,double helix,structureenzyme,polymerase,transferase
55
2BR0|1|T+2BR0|1|P		DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-RAY DIFFRACTION2.1718B-form double helix,double helix,structureenzyme,polymerase,transferase
56
2P5O|1|I+2P5O|1|J		Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.818B-form double helix,double helix,structureenzyme,polymerase,transferase
57
1WBD|1|E+1WBD|1|F		Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38Q mutant, in complex with a G.T mismatchX-RAY DIFFRACTION2.418B-form double helix,double helix,feature,mispair,structureDNA replication/repair,regulatory
58
2UVU|1|T+2UVU|1|P		Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-RAY DIFFRACTION2.718B-form double helix,double helix,structureenzyme,polymerase,transferase
59
2BNW|1|G+2BNW|1|H		Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeatsX-RAY DIFFRACTION2.4518DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
60
1DCT|1|F+1DCT|1|M		DNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNAX-RAY DIFFRACTION2.818B-form double helix,double helix,structureenzyme,methylase,transferase
61
2W9B|1|E+2W9B|1|C		Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNAX-RAY DIFFRACTION2.2818B-form double helix,double helix,structureenzyme,polymerase,transferase
62
3MKZ|1|Y+3MKZ|1|Z		Structure of SopB(155-272)-18mer complex, P21 formX-RAY DIFFRACTION2.9818B-form double helix,double helix,structureregulatory
63
2XCP|1|F+2XCP|1|E		TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORMX-RAY DIFFRACTION2.618B-form double helix,double helix,structureenzyme,polymerase,transferase
64
2W9B|1|F+2W9B|1|D		Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNAX-RAY DIFFRACTION2.2818B-form double helix,double helix,structureenzyme,polymerase,transferase
65
3GIM|1|E+3GIM|1|D		Dpo4 extension ternary complex with oxoG(anti)-G(syn) pairX-RAY DIFFRACTION2.718B-form double helix,double helix,structureenzyme,polymerase,transferase
66
1WB9|1|E+1WB9|1|F		Crystal Structure of E. coli DNA Mismatch Repair enzyme MutS, E38T mutant, in complex with a G.T mismatchX-RAY DIFFRACTION2.118B-form double helix,double helix,feature,mispair,structureDNA replication/repair,regulatory
67
3NDK|1|T+3NDK|1|P		RB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dGX-RAY DIFFRACTION218B-form double helix,double helix,structureenzyme,polymerase,transferase
68
3PR4|1|T		Dpo4 Y12A mutant incorporating dADP opposite template dTX-RAY DIFFRACTION2.6522B-form double helix,double helix,structureenzyme,polymerase,transferase
69
2OZM|1|T+2OZM|1|P		Crystal structure of RB69 gp43 in complex with DNA with 5-NITP opposite an abasic site analogX-RAY DIFFRACTION2.8618double helix,structureenzyme,polymerase,transferase
70
2V9W|1|D+2V9W|1|C		Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION318double helix,structureenzyme,polymerase,transferase
71
2J6U|1|T+2J6U|1|P		Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dGTP.X-RAY DIFFRACTION2.518B-form double helix,double helix,structureenzyme,polymerase,transferase
72
2UVV|1|T+2UVV|1|P		Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-RAY DIFFRACTION2.218B-form double helix,double helix,structureenzyme,polymerase,transferase
73
2W8L|1|T+2W8L|1|P		Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in anti orientationX-RAY DIFFRACTION318B-form double helix,double helix,structureenzyme,polymerase,transferase
74
3NE6|1|T+3NE6|1|P		RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dCTP Opposite dGX-RAY DIFFRACTION2.00118B-form double helix,double helix,structureenzyme,polymerase,transferase
75
1JX4|1|T+1JX4|1|P		Crystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming NucleotideX-RAY DIFFRACTION1.718B-form double helix,double helix,structureenzyme,polymerase,transferase
76
1S9F|1|J+1S9F|1|F		DPO with AT matchedX-RAY DIFFRACTION218B-form double helix,double helix,structureenzyme,polymerase,transferase
77
2JEF|1|T+2JEF|1|P		The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect PairingX-RAY DIFFRACTION2.1718B-form double helix,double helix,structureenzyme,polymerase,transferase
78
2JEG|1|T+2JEG|1|P		The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-RAY DIFFRACTION2.3818B-form double helix,double helix,structureenzyme,polymerase,transferase
79
3G6P|1|C+3G6P|1|D		GR DNA binding domain:FKBP5 complex, 18bpX-RAY DIFFRACTION1.98518B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
80
3MKW|1|T+3MKW|1|U		Structure of sopB(155-272)-18mer complex, I23 formX-RAY DIFFRACTION2.9918B-form double helix,double helix,structureregulatory
81
2W9C|1|E+2W9C|1|C		Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTPX-RAY DIFFRACTION2.918double helix,structureenzyme,polymerase,transferase
82
1H0M|1|G+1H0M|1|H		Three-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNAX-RAY DIFFRACTION318B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
83
2J6S|1|T+2J6S|1|P		Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.X-RAY DIFFRACTION2.518B-form double helix,double helix,structureenzyme,polymerase,transferase
84
3CFP|1|T+3CFP|1|P		Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 1X-RAY DIFFRACTION2.518B-form double helix,double helix,structureenzyme,polymerase,transferase
85
3EPG|1|B+3EPG|1|C		Structure of Human DNA Polymerase Iota complexed with N2-ethylguanineX-RAY DIFFRACTION2.518enzyme,polymerase,transferase
86
2W7N|1|E+2W7N|1|F+2W7N|1|G+2W7N|1|H		Crystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene RegulationX-RAY DIFFRACTION1.8518B-form double helix,double helix,structureregulatory,transcription
87
2W9C|1|F+2W9C|1|D		Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTPX-RAY DIFFRACTION2.918double helix,structureenzyme,polymerase,transferase
88
3DW9|1|E+3DW9|1|F		SgrAI with cognate DNA and manganese boundX-RAY DIFFRACTION2.218B-form double helix,double helix,structureenzyme,hydrolase,nuclease
89
2BQU|1|T+2BQU|1|P		DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-RAY DIFFRACTION2.518B-form double helix,double helix,structureenzyme,polymerase,transferase
90
3M9N|1|T+3M9N|1|P		Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-RAY DIFFRACTION1.9318B-form double helix,double helix,structureenzyme,polymerase,transferase
91
1BG1|1|B		TRANSCRIPTION FACTOR STAT3B/DNA COMPLEXX-RAY DIFFRACTION2.2518B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),STAT,immunoglobulin (Ig) fold,regulatory,transcription
92
2DY4|1|E+2DY4|1|F		Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-RAY DIFFRACTION2.6518enzyme,polymerase,transferase
93
1S9F|1|L+1S9F|1|H		DPO with AT matchedX-RAY DIFFRACTION218B-form double helix,double helix,structureenzyme,polymerase,transferase
94
2J6T|1|T+2J6T|1|P		Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.X-RAY DIFFRACTION2.618B-form double helix,double helix,structureenzyme,polymerase,transferase
95
2XCA|1|T+2XCA|1|P		TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dGTP - MAGNESIUM FORMX-RAY DIFFRACTION2.518B-form double helix,double helix,structureenzyme,polymerase,transferase
96
1R0N|1|C+1R0N|1|D		Crystal Structure of Heterodimeric Ecdsyone receptor DNA binding complexX-RAY DIFFRACTION2.618B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
97
2DY4|1|G+2DY4|1|H		Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-RAY DIFFRACTION2.6518enzyme,polymerase,transferase
98
1S0N|1|T+1S0N|1|P		Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshiftX-RAY DIFFRACTION2.818double helix,structureenzyme,polymerase,transferase
99
3K57|1|T+3K57|1|P		Crystal structure of E.coli Pol II-normal DNA-dATP ternary complexX-RAY DIFFRACTION2.0818B-form double helix,double helix,structureenzyme,polymerase,transferase
100
1S97|1|K+1S97|1|G		DPO4 with GT mismatchX-RAY DIFFRACTION2.418B-form double helix,double helix,structureenzyme,polymerase,transferase
101
3L8B|1|C+3L8B|1|D		Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoinX-RAY DIFFRACTION2.1518B-form double helix,double helix,structureenzyme,polymerase,transferase
102
3NAE|1|T+3NAE|1|P		RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite GuanidinohydantoinX-RAY DIFFRACTION2.00318B-form double helix,double helix,structureenzyme,polymerase,transferase
103
2UVW|1|T+2UVW|1|P		Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-RAY DIFFRACTION2.0918B-form double helix,double helix,structureenzyme,polymerase,transferase
104
3LZI|1|T+3LZI|1|P		RB69 DNA Polymerase (Y567A) ternary complex with dATP Opposite 7,8-dihydro-8-oxoguanineX-RAY DIFFRACTION2.318B-form double helix,double helix,structureenzyme,polymerase,transferase
105
2C2R|1|T+2C2R|1|P		Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-RAY DIFFRACTION2.5518B-form double helix,double helix,structureenzyme,polymerase,transferase
106
1DCT|1|G+1DCT|1|N		DNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNAX-RAY DIFFRACTION2.818B-form double helix,double helix,structureenzyme,methylase,transferase
107
2V9W|1|F+2V9W|1|E		Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION318double helix,structureenzyme,polymerase,transferase
108
2VA3|1|T+2VA3|1|P		Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION2.9818B-form double helix,double helix,structureenzyme,polymerase,transferase
109
2IVH|1|B+2IVH|1|C		Crystal structure of the nuclease domain of ColE7 (H545Q mutant) in complex with an 18-bp duplex DNAX-RAY DIFFRACTION2.818B-form double helix,double helix,structureenzyme,hydrolase,nuclease
110
2P5O|1|E+2P5O|1|F		Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.818B-form double helix,double helix,structureenzyme,polymerase,transferase
111
3OSN|1|B+3OSN|1|C		Structural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase IotaX-RAY DIFFRACTION1.918enzyme,polymerase,transferase
112
2P5O|1|G+2P5O|1|H		Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.818B-form double helix,double helix,structureenzyme,polymerase,transferase
113
1H0M|1|E+1H0M|1|F		Three-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNAX-RAY DIFFRACTION318B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
114
1RYS|1|D+1RYS|1|C		REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONX-RAY DIFFRACTION2.0318B-form double helix,double helix,structureenzyme,polymerase,transferase
115
1BF5|1|B		TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEXX-RAY DIFFRACTION2.918double helix,structureDNA-binding transcription factor (TF),STAT,immunoglobulin (Ig) fold,regulatory,transcription
116
2DY4|1|K+2DY4|1|L		Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-RAY DIFFRACTION2.6518enzyme,polymerase,transferase
117
1YNW|1|C+1YNW|1|D		Crystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response ElementX-RAY DIFFRACTION318B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
118
1NLW|1|F+1NLW|1|G		Crystal structure of Mad-Max recognizing DNAX-RAY DIFFRACTION218B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription
119
1BF5|1|C		TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEXX-RAY DIFFRACTION2.918double helix,structureDNA-binding transcription factor (TF),STAT,immunoglobulin (Ig) fold,regulatory,transcription
120
1R0O|1|C+1R0O|1|D		Crystal Structure of the Heterodimeric Ecdysone Receptor DNA-binding ComplexX-RAY DIFFRACTION2.2418B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
121
3MKZ|1|C+3MKZ|1|D		Structure of SopB(155-272)-18mer complex, P21 formX-RAY DIFFRACTION2.9818B-form double helix,double helix,structureregulatory
122
1S97|1|J+1S97|1|F		DPO4 with GT mismatchX-RAY DIFFRACTION2.418B-form double helix,double helix,structureenzyme,polymerase,transferase
123
2BQ3|1|T+2BQ3|1|P		DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-RAY DIFFRACTION218B-form double helix,double helix,structureenzyme,polymerase,transferase
124
2P5O|1|K+2P5O|1|L		Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.818B-form double helix,double helix,structureenzyme,polymerase,transferase
125
1S97|1|L+1S97|1|H		DPO4 with GT mismatchX-RAY DIFFRACTION2.418B-form double helix,double helix,structureenzyme,polymerase,transferase
126
3LZJ|1|T+3LZJ|1|P		RB69 DNA Polymerase (Y567A) ternary complex with dCTP Opposite 7,8-Dihydro-8-oxoguanineX-RAY DIFFRACTION2.0518B-form double helix,double helix,structureenzyme,polymerase,transferase
127
3NGI|1|T+3NGI|1|P		RB69 DNA Polymerase (Y567A) Ternary Complex with dTTP Opposite dGX-RAY DIFFRACTION1.88618B-form double helix,double helix,structureenzyme,polymerase,transferase
128
3GIJ|1|J+3GIJ|1|H		Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairsX-RAY DIFFRACTION2.418B-form double helix,double helix,structureenzyme,polymerase,transferase
129
2OG0|1|C+2OG0|1|D		Crystal Structure of the Lambda Xis-DNA complexX-RAY DIFFRACTION1.918B-form double helix,double helix,structureenzyme,recombinase
130
2NL8|1|W		The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)X-RAY DIFFRACTION2.318B-form double helix,double helix,feature,mispair,structureDNA replication/repair,enzyme,helicase,hydrolase,regulatory
131
3NHG|1|T+3NHG|1|P		RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dTTP Opposite dGX-RAY DIFFRACTION2.518B-form double helix,double helix,structureenzyme,polymerase,transferase
132
3M9M|1|T+3M9M|1|P		Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-RAY DIFFRACTION2.918enzyme,polymerase,transferase
133
1IG9|1|T+1IG9|1|P		Structure of the Replicating Complex of a Pol Alpha Family DNA PolymeraseX-RAY DIFFRACTION2.618B-form double helix,double helix,structureenzyme,polymerase,transferase
134
1CGP|1|C+1CGP|1|E+1CGP|1|D+1CGP|1|F		CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATEX-RAY DIFFRACTION318B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
135
1WBB|1|E+1WBB|1|F		Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38A mutant, in complex with a G.T mismatchX-RAY DIFFRACTION2.518B-form double helix,double helix,feature,mispair,structureDNA replication/repair,regulatory
136
3G6R|1|C+3G6R|1|D		GR DNA binding domain:FKBP5 complex-52, 18bpX-RAY DIFFRACTION2.318B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
137
3BSE|1|A+3BSE|1|B		Crystal structure analysis of a 16-base-pair B-DNAX-RAY DIFFRACTION1.618B-form double helix,double helix,structure
138
2DY4|1|I+2DY4|1|J		Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-RAY DIFFRACTION2.6518enzyme,polymerase,transferase
139
2P5L|1|E+2P5L|1|F		Crystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator siteX-RAY DIFFRACTION2.8518B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
140
3K5L|1|T+3K5L|1|P		Crystal structure of E.coli Pol II-abasic DNA-dATP Lt(0, 3) ternary complexX-RAY DIFFRACTION2.718double helix,structureenzyme,polymerase,transferase
141
2JEJ|1|T+2JEJ|1|P		The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-RAY DIFFRACTION1.8618enzyme,polymerase,transferase
142
1Q9X|1|G+1Q9X|1|K		Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-RAY DIFFRACTION2.6918double helix,structureenzyme,polymerase,transferase
143
3CFR|1|T+3CFR|1|P		Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 2X-RAY DIFFRACTION2.418B-form double helix,double helix,structureenzyme,polymerase,transferase
144
2XCP|1|T+2XCP|1|P		TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORMX-RAY DIFFRACTION2.618B-form double helix,double helix,structureenzyme,polymerase,transferase
145
2P5L|1|A+2P5L|1|B		Crystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator siteX-RAY DIFFRACTION2.8518B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead

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