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Equivalence class DNA_3.0_10786.9 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13O1M|1|B+ 3O1M|1|C (rep)DNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(ME6)P*AP*CP*CP*GP*T)-3'), DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.752010-11-17
23MR2|1|T+ 3MR2|1|PDNA (5'-D(*T*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*TP*CP*AP*T)-3')Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm)X-ray diffraction1.832010-06-30
33O1P|1|B+ 3O1P|1|CDNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(EDA)P*AP*CP*CP*GP*T)-3'), DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.512010-11-17
43BKZ|1|B+ 3BKZ|1|CDNA (5'-D(*DTP*DAP*DGP*DGP*DTP*DAP*DAP*DCP*DAP*DTP*DCP*DGP*DT)-3'), DNA (5'-D(*DAP*DAP*DCP*DGP*DAP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3')X-ray structure of E coli AlkB crosslinked to dsDNA in the active siteX-ray diffraction1.652008-04-22
53O1T|1|C+ 3O1T|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDU)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.482010-11-17
63BIE|1|C+ 3BIE|1|BDNA (5'-D(*DAP*DAP*DCP*DGP*DGP*DTP*DTP*DTP*DTP*DAP*DCP*DCP*DT)-3'), DNA (5'-D(P*DAP*DGP*DGP*DTP*DAP*DAP*(MA7)P*DAP*DCP*DCP*DGP*DT)-3')X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KGX-ray diffraction1.682008-04-22
73I0W|1|B+ 3I0W|1|C5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*A)-3'Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoGX-ray diffraction1.732009-09-29
83I0X|1|C+ 3I0X|1|D5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*AP*TP*GP*GP*A)-3'Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing adenine opposite to 8-oxoGX-ray diffraction1.82009-09-29
91SXQ|1|C+ 1SXQ|1|E5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3'BGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-ray diffraction1.82004-06-22
101M5R|1|C+ 1M5R|1|E5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction1.82002-12-11
111SXQ|1|D+ 1SXQ|1|F5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3'BGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-ray diffraction1.82004-06-22
121M5R|1|D+ 1M5R|1|F5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction1.82002-12-11
133O1U|1|C+ 3O1U|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDV)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.542010-11-17
142HHW|1|C+ 2HHW|1|B5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-ray diffraction1.882006-12-12
152HHW|1|F+ 2HHW|1|E5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-ray diffraction1.882006-12-12
163O1O|1|B+ 3O1O|1|CDNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(MFT)P*AP*CP*CP*GP*T)-3'), DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.922010-11-17
173O1S|1|C+ 3O1S|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDQ)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.582010-11-17
183H8R|1|B+ 3H8R|1|C5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*(6MA)P*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*TP*AP*TP*AP*AP*TP*AP*CP*A)-3'synthetic constructStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-ray diffraction1.772010-03-31
193O1R|1|C+ 3O1R|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDK)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.772010-11-17
202HVI|1|C+ 2HVI|1|B5'-D(*C*AP*TP*GP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:G pair in the polymerase active site (0 position)X-ray diffraction1.982006-12-12
212HVI|1|F+ 2HVI|1|E5'-D(*C*AP*TP*GP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:G pair in the polymerase active site (0 position)X-ray diffraction1.982006-12-12
223BTX|1|B+ 3BTX|1|CDNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3')X-ray structure of human ABH2 bound to dsDNA through active site cross-linkingX-ray diffraction22008-04-22
232UYC|1|C+ 2UYC|1|D5'-D(*TP*GP*GP*AP*TP*GP*5CMP*GP*CP*TP *GP*AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3'synthetic constructHhaI DNA methyltransferase R163N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-ray diffraction22008-05-27
243OHA|1|T+ 3OHA|1|P5'-D(P*TP*(8OG)P*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3'Yeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesionX-ray diffraction22010-12-22
253L2C|1|B+ 3L2C|1|CFOXO consensus binding sequence, plus strand, FOXO consensus binding sequence, minus strandCrystal Structure of the DNA Binding Domain of FOXO4 Bound to DNAX-ray diffraction1.8682009-12-29
263O1V|1|C+ 3O1V|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDJ)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.92010-11-17
272UZ4|1|C+ 2UZ4|1|D5'-D(*TP*GP*GP*AP*TP*GP*5CMP*GP*CP*TP*GP *AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3'HhaI DNA methyltransferase R165N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-ray diffraction2.12008-06-03
283H8X|1|B+ 3H8X|1|C5'-D(*CP*TP*GP*TP*(ME6)P*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*AP*AP*TP*AP*AP*GP*AP*CP*A)-3'synthetic constructStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-ray diffraction1.952010-03-31
292ZO1|1|D+ 2ZO1|1|EDNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3'), DNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3')Mouse NP95 SRA domain DNA specific complex 2X-ray diffraction1.962008-09-09
303QZ8|1|P5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*AP*GP*G)-3'TT-4 ternary complex of Dpo4X-ray diffraction1.9992011-04-06
313H8O|1|B+ 3H8O|1|C5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*(MA7)P*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*TP*AP*TP*AP*AP*TP*AP*CP*A)-3'synthetic constructStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-ray diffraction22010-03-31
321PUY|1|A5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3'1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-ray diffraction1.52003-10-14
331PUY|1|B5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3'1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-ray diffraction1.52003-10-14
343RAX|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3')Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesionX-ray diffraction1.8912011-06-15
353RAX|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3')Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesionX-ray diffraction1.8912011-06-15
363BI3|1|B+ 3BI3|1|CDNA (5'-D(*TP*AP*GP*GP*TP*AP*AP*(MA7)P*AP*(2YR)P*CP*GP*T)-3'), DNA (5'-D(*DAP*DAP*DCP*DGP*DGP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3')X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactorsX-ray diffraction1.92008-04-22
371OE5|1|F+ 1OE5|1|E5'-D(*CP*3DRP*GP*GP*AP*CP*TP*3DRP*AP*CP*GP*GP*GP)-3', 5'-D(*CP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*G)-3'Xenopus SMUG1, an anti-mutator uracil-DNA GlycosylaseX-ray diffraction2.32003-07-11
383E6C|1|A+ 3E6C|1|BDNA (5'-D(P*DGP*DGP*DCP*DAP*DTP*DGP*DTP*DTP*DAP*DAP*DTP*DGP*DC)-3'), DNA (5'-D(P*DGP*DCP*DAP*DTP*DTP*DAP*DAP*DCP*DAP*DTP*DGP*DCP*DC)-3')CprK OCPA DNA ComplexX-ray diffraction1.82008-09-30
394BDP|1|T+ 4BDP|1|PDNA (5'-D(*TP*AP*TP*TP*GP*CP*AP*TP*GP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*CP*AP*TP*GP*CP*AP*A)-3')CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUESX-ray diffraction1.81999-01-13
401YO5|1|A+ 1YO5|1|BEnhancer site of Prostate Specific Antigen Promoter RegionAnalysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory siteX-ray diffraction22005-05-17
412IRF|1|D+ 2IRF|1|CDNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3')CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-ray diffraction2.21999-10-08
422IRF|1|E+ 2IRF|1|BDNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3')CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-ray diffraction2.21999-10-08
432IRF|1|F+ 2IRF|1|ADNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3')CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-ray diffraction2.21999-10-08
441Y8Z|1|C+ 1Y8Z|1|D5'-D(*GP*AP*TP*AP*CP*TP*(5HU)P*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*G)-3'alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a HMU base at 1.9 A resolutionX-ray diffraction1.92005-08-30
453EYZ|1|C+ 3EYZ|1|B5'-D(*DAP*DTP*DGP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DGP*DA)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DGP*DC)-3'Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form)X-ray diffraction2.12009-11-10
462OXV|1|CDNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')Structure of the A138T promiscuous mutant of the EcoRI restriction endonuclease bound to its cognate recognition site.X-ray diffraction1.952007-10-23
471GD2|1|A+ 1GD2|1|BDNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3')CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-ray diffraction22000-10-02
481GD2|1|C+ 1GD2|1|DDNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3')CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-ray diffraction22000-10-02
492ZO0|1|D+ 2ZO0|1|EDNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3'), DNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3')mouse NP95 SRA domain DNA specific complex 1X-ray diffraction2.192008-09-09
503RAQ|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3')Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesionX-ray diffraction2.252011-06-15
513RAQ|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3')Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesionX-ray diffraction2.252011-06-15
522HHX|1|C+ 2HHX|1|B5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*G)-3'O6-methyl-guanine in the polymerase template preinsertion siteX-ray diffraction2.262006-12-12
531WTE|1|X+ 1WTE|1|Y5'-D(*AP*CP*CP*GP*GP*GP*CP*CP*CP*TP*GP*CP*C)-3', 5'-D(*GP*GP*CP*AP*GP*GP*GP*CP*CP*CP*GP*GP*T)-3'Crystal structure of type II restrcition endonuclease, EcoO109I complexed with cognate DNAX-ray diffraction1.92004-12-14
541J1V|1|B+ 1J1V|1|C5'-D(*TP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'Crystal structure of DnaA domainIV complexed with DnaAbox DNAX-ray diffraction2.12003-04-22
553PVP|1|CDNA (5'-D(*CP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*AP*C)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-ray diffraction2.32011-05-25
563PVP|1|DDNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*G)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-ray diffraction2.32011-05-25
573PVP|1|EDNA (5'-D(*CP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*AP*C)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-ray diffraction2.32011-05-25
583PVP|1|FDNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*G)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-ray diffraction2.32011-05-25
593QZ7|1|P5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*GP*GP*G)-3'T-3 ternary complex of Dpo4X-ray diffraction1.9982011-04-06
603GV5|1|F+ 3GV5|1|E5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3'Human DNA polymerase iota in complex with T template DNA and incoming ddADPX-ray diffraction22009-06-02
613GV5|1|T+ 3GV5|1|P5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3'Human DNA polymerase iota in complex with T template DNA and incoming ddADPX-ray diffraction22009-06-02
623A46|1|C+ 3A46|1|DDNACrystal structure of MvNei1/THF complexX-ray diffraction2.22009-07-21
633A46|1|E+ 3A46|1|FDNACrystal structure of MvNei1/THF complexX-ray diffraction2.22009-07-21
643G0R|1|G+ 3G0R|1|K5'-D(*GP*CP*TP*GP*CP*GP*CP*AP*GP*GP*GP*CP*G)-3', 5'-D(*CP*CP*CP*TP*GP*UP*GP*CP*AP*GP*C)-3'Complex of Mth0212 and an 8bp dsDNA with distorted endsX-ray diffraction2.42010-03-09
653BTY|1|B+ 3BTY|1|CDNA (5'-D(*DCP*DTP*DGP*DTP*DAP*DTP*(MA7)P*DAP*DCP*DTP*DGP*DCP*DG)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DGP*DTP*DTP*DAP*DTP*DAP*DCP*DA)-3')Crystal structure of human ABH2 bound to dsDNA containing 1meA through cross-linking away from active siteX-ray diffraction2.352008-04-22
663PR5|1|PDNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3')Dpo4 Y12A mutant incorporating ADP opposite template dTX-ray diffraction2.42011-02-23
671PP7|1|E+ 1PP7|1|FFERREDOXIN INRCrystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin InrX-ray diffraction2.452003-11-18
683OS0|1|tDNA (5'-D(*CP*CP*CP*GP*AP*G*GP*CP*AP*CP*GP*TP*G)-3')PFV strand transfer complex (STC) at 2.81 A resolutionX-ray diffraction2.812010-11-17
691U8B|1|E+ 1U8B|1|D5'-D(*AP*AP*TP*CP*TP*TP*GP*CP*GP*CP*TP*TP*T)-3', 5'-D(P*AP*AP*AP*GP*CP*GP*CP*AP*AP*GP*AP*T)-3'Crystal structure of the methylated N-ADA/DNA complexX-ray diffraction2.12005-10-11
701YQM|1|B+ 1YQM|1|C5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(7GU)P*GP*TP*CP*TP*AP*C)-3'Catalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNAX-ray diffraction2.52005-04-05
713RBD|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3')Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.5022011-06-15
723RBD|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3')Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.5022011-06-15
733QE9|1|ADNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3')Crystal structure of human exonuclease 1 Exo1 (D173A) in complex with DNA (complex I)X-ray diffraction2.512011-04-20
743QE9|1|CDNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3')Crystal structure of human exonuclease 1 Exo1 (D173A) in complex with DNA (complex I)X-ray diffraction2.512011-04-20
753PVV|1|EDNA (5'-D(*CP*GP*TP*TP*GP*TP*CP*CP*AP*CP*AP*AP*C)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-ray diffraction22011-05-25
763PVV|1|DDNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*CP*AP*AP*CP*G)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-ray diffraction22011-05-25
773PVV|1|FDNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*CP*AP*AP*CP*G)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-ray diffraction22011-05-25
783PVV|1|CDNA (5'-D(*CP*GP*TP*TP*GP*TP*CP*CP*AP*CP*AP*AP*C)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-ray diffraction22011-05-25
793PO5|1|CDNA (5'-D(P*(3DR)P*TP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3')Structure of a mutant of the large fragment of DNA polymerase I from Thermus Auqaticus in complex with an abasic site and ddATPX-ray diffraction2.392011-06-15
801Y6F|1|C+ 1Y6F|1|D5'-D(*GP*AP*TP*AP*CP*TP*(3DR)P*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic siteX-ray diffraction2.42005-08-30
811YQL|1|B+ 1YQL|1|C5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(PPW)P*GP*TP*CP*TP*AP*C)-3'Catalytically inactive hOGG1 crosslinked with 7-deaza-8-azaguanine containing DNAX-ray diffraction2.62005-04-05
822UYH|1|C+ 2UYH|1|D5'-D(*TP*GP*GP*AP*TP*G*5CMP*GP*CP*TP*GP *AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3'HhaI DNA methyltransferase S87Q-Q237S mutant complex with 13mer GCGC- GMGC oligonucleotide and SAHX-ray diffraction2.632008-05-27
833BTZ|1|B+ 3BTZ|1|CDNA (5'-D(*AP*GP*GP*TP*GP*AP*(2YR)P*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DTP*DTP*DAP*DTP*DCP*DAP*DCP*DC)-3')Crystal structure of human ABH2 cross-linked to dsDNAX-ray diffraction32008-04-22
843GFI|1|D+ 3GFI|1|E5'-D(*TP*AP*AP*CP*AP*AP*TP*AP*GP*CP*AP*AP*A)-3', 5'-D(*TP*TP*GP*CP*TP*AP*TP*TP*GP*T)-3'Crystal structure of ST1710 complexed with its promoter DNAX-ray diffraction2.12009-08-25
853PR4|1|PDNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3')Dpo4 Y12A mutant incorporating dADP opposite template dTX-ray diffraction2.652011-02-23
862FCC|1|C+ 2FCC|1|DDNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3')Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-ray diffraction2.32006-10-03
872FCC|1|E+ 2FCC|1|FDNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3')Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-ray diffraction2.32006-10-03
882HVH|1|C+ 2HVH|1|B5'-D(*CP*A*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:O6MeG pair in the polymerase active site (0 position)X-ray diffraction2.4922006-12-12
892HVH|1|F+ 2HVH|1|E5'-D(*CP*A*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:O6MeG pair in the polymerase active site (0 position)X-ray diffraction2.4922006-12-12
903BU0|1|B+ 3BU0|1|CDNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3')crystal structure of human ABH2 cross-linked to dsDNA with cofactorsX-ray diffraction2.52008-04-22
911SXP|1|C+ 1SXP|1|D5'-D(*A*AP*TP*AP*CP*TP*AP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*T)-3'BGT in complex with a 13mer DNA containing a central A:G mismatchX-ray diffraction2.52004-06-22
923RB6|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3')Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.72011-06-15
933RB6|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3')Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.72011-06-15
941KFV|1|D+ 1KFV|1|E5'-D(*CP*TP*CP*TP*TP*TP*(PDI)P*TP*TP*TP*CP*TP*C)-3', 5'-D(*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*AP*G)-3'Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA.X-ray diffraction2.552002-06-14
951KFV|1|G+ 1KFV|1|H5'-D(*CP*TP*CP*TP*TP*TP*(PDI)P*TP*TP*TP*CP*TP*C)-3', 5'-D(*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*AP*G)-3'Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA.X-ray diffraction2.552002-06-14
963RB3|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3')Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 1-methylguanine (m1g) lesionX-ray diffraction2.82011-06-15
971IXY|1|C+ 1IXY|1|E5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction2.52002-12-04
981IXY|1|D+ 1IXY|1|F5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction2.52002-12-04
992UZK|1|B+ 2UZK|1|E5'-D(*CP*TP*AP*TP*GP*TP*AP*AP*AP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*TP*TP*TP*AP*CP*AP*TP*AP*G)-3'Homo sapiensCrystal structure of the human FOXO3a-DBD bound to DNAX-ray diffraction2.72008-05-13
1002UZK|1|D+ 2UZK|1|F5'-D(*CP*TP*AP*TP*GP*TP*AP*AP*AP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*TP*TP*TP*AP*CP*AP*TP*AP*G)-3'Homo sapiensCrystal structure of the human FOXO3a-DBD bound to DNAX-ray diffraction2.72008-05-13
1013QI5|1|CDNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDC)P*TP*TP*GP*CP*CP*T)-3')Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-ray diffraction2.22011-03-09
1023QI5|1|DDNA (5'-D(*GP*GP*CP*AP*AP*GP*CP*AP*TP*GP*TP*CP*A)-3')Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-ray diffraction2.22011-03-09
1033QI5|1|EDNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDC)P*TP*TP*GP*CP*CP*T)-3')Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-ray diffraction2.22011-03-09
1043QI5|1|FDNA (5'-D(*GP*GP*CP*AP*AP*GP*CP*AP*TP*GP*TP*CP*A)-3')Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-ray diffraction2.22011-03-09
1053BUC|1|B+ 3BUC|1|CDNA (5'-D(*DCP*DTP*DGP*DTP*DAP*DTP*(MA7)P*DAP*DCP*DTP*DGP*DCP*DG)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DGP*DTP*DTP*DAP*DTP*DAP*DCP*DA)-3')X-ray structure of human ABH2 bound to dsDNA with Mn(II) and 2KGX-ray diffraction2.592008-04-22
1063RBE|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3')Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.82011-06-15
1073RBE|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3')Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.82011-06-15
1083RB4|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DDG))-3')Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.8052011-06-15
1093RB4|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DDG))-3')Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.8052011-06-15
1103QEB|1|ADNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3')Crystal structure of human exonuclease 1 Exo1 (WT) in complex with DNA and Mn2+ (complex III)X-ray diffraction32011-04-20
1111Y6G|1|C+ 1Y6G|1|D5'-D(*GP*AP*TP*AP*CP*TP*(5HU)P*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*T)-3'alpha-glucosyltransferase in complex with UDP and a 13_mer DNA containing a HMU base at 2.8 A resolutionX-ray diffraction2.82005-08-30
1123KOV|1|C+ 3KOV|1|DDNA (5'-D(*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*T)-3')Structure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factorsX-ray diffraction2.92010-02-16
1133KOV|1|K+ 3KOV|1|LDNA (5'-D(*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*T)-3')Structure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factorsX-ray diffraction2.92010-02-16
1143GX4|1|Y+ 3GX4|1|ZDNA (5'-D(*GP*CP*CP*AP*TP*GP*(6OG)P*CP*TP*AP*GP*TP*A)-3'), DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3')Crystal Structure Analysis of S. Pombe ATL in complex with DNAX-ray diffraction2.72009-06-09
1153GYH|1|Y+ 3GYH|1|ZDNA (5'-D(*GP*CP*CP*AP*TP*GP*GP*CP*TP*AP*GP*TP*A)-3'), DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3')Crystal Structure Analysis of S. Pombe ATL in complex with damaged DNA containing POBX-ray diffraction2.82009-06-16
1161K3X|1|B+ 1K3X|1|C5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNAX-ray diffraction1.252002-10-04
1171K3W|1|B+ 1K3W|1|C5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNAX-ray diffraction1.422002-10-04
1181LLM|1|A+ 1LLM|1|B5'-D(*TP*CP*CP*CP*AP*CP*GP*CP*GP*TP*GP*GP*G)-3'Crystal Structure of a Zif23-GCN4 Chimera Bound to DNAX-ray diffraction1.52003-09-30
1191QUM|1|D+ 1QUM|1|C+ 1QUM|1|B5'-D(*CP*GP*TP*CP*C)-3', 5'-D(*(3DR)P*CP*GP*AP*CP*GP*A)-3', 5'-D(*TP*CP*GP*TP*CP*GP*GP*GP*GP*AP*CP*G)-3'CRYSTAL STRUCTURE OF ESCHERICHIA COLI ENDONUCLEASE IV IN COMPLEX WITH DAMAGED DNAX-ray diffraction1.551999-08-31
1203PVI|1|C+ 3PVI|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3')D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSISX-ray diffraction1.591998-10-14
1211DC1|1|C+ 1DC1|1|WDNA (5'-D(*T*AP*TP*AP*CP*TP*CP*GP*AP*GP*TP*AP*T)-3')RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLDX-ray diffraction1.72001-02-21
1222PVI|1|C+ 2PVI|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*(C38)P*TP*GP*GP*TP*C)-3')PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNAX-ray diffraction1.761999-12-20
1231EYU|1|C+ 1EYU|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3')HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6X-ray diffraction1.782000-07-21
1241CL8|1|BDNA (5'-D(*TP*CP*GP*CP*GP*AP*(PRN)P*TP*TP*CP*GP*CP*G)-3')A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P)X-ray diffraction1.81999-05-19
1251A73|1|C+ 1A73|1|E+ 1A73|1|D+ 1A73|1|FDNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3')INTRON-ENCODED ENDONUCLEASE I-PPOI COMPLEXED WITH DNAX-ray diffraction1.81998-10-14
1261CKQ|1|BDNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEXX-ray diffraction1.851999-04-26
1272C7Q|1|C+ 2C7Q|1|D5'-D(*T*GP*GP*(2PR)*GP*GP*(5CM)*GP*CP*TP*GP* AP*C)-3', 5'-D(*T*GP*TP*CP*AP*GP*CP*GP*CP*CP*GP*CP*C)-3'synthetic constructHhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine outside the recognition sequence (paired with G) and SAHX-ray diffraction1.852005-12-14
1282C7O|1|C+ 2C7O|1|D5'-D(*T*GP*GP*AP*TP*GP*(5CM)*GP*CP*TP*GP*AP *C)-3', 5'-D(*T*GP*TP*CP*AP*(2PR)*CP*GP*CP*AP*TP*CP *C)-3'synthetic constructHhaI DNA methyltransferase complex with 13mer oligonucleotide containing 2-aminopurine adjacent to the target base (PCGC:GMGC) and SAHX-ray diffraction1.92005-12-14
1292HR1|1|D+ 2HR1|1|C5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcyX-ray diffraction1.962006-09-19
1301DUX|1|A+ 1DUX|1|BDNA (5'-D(*TP*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*T)-3'), DNA (5'-D(*AP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*A)-3')ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-ray diffraction2.12000-04-17
1311DUX|1|D+ 1DUX|1|EDNA (5'-D(*TP*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*T)-3'), DNA (5'-D(*AP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*A)-3')ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-ray diffraction2.12000-04-17
1321K82|1|E+ 1K82|1|I5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.12002-06-14
1331K82|1|F+ 1K82|1|J5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.12002-06-14
1341K82|1|G+ 1K82|1|K5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.12002-06-14
1351K82|1|H+ 1K82|1|L5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.12002-06-14
1361MEY|1|A+ 1MEY|1|B+ 1MEY|1|D+ 1MEY|1|EDNA (5'-D(*AP*TP*GP*AP*GP*GP*CP*AP*GP*AP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*CP*TP*GP*CP*CP*TP*(C38)P*A)-3')CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNAX-ray diffraction2.21997-03-12
1371SKM|1|C+ 1SKM|1|D5'-D(*TP*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3', 5'-D(*T*GP*TP*CP*AP*GP*(HCX)P*GP*CP*AP*TP*GP*G)-3'HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target siteX-ray diffraction2.22004-08-24
1381T7P|1|T+ 1T7P|1|PDNA (5'-D(P*CP*CP*TP*TP*GP*GP*CP*AP*CP*TP*GP*GP*C)-3'), DNA (5'-D(P*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*2DA)-3')T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXINX-ray diffraction2.21998-02-25
1391FJX|1|C+ 1FJX|1|DDNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3')STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCYX-ray diffraction2.262000-12-15
1401YF3|1|C+ 1YF3|1|D5'-D(*AP*CP*CP*AP*TP*GP*AP*TP*CP*TP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*AP*GP*AP*TP*CP*AP*TP*GP*G)-3'T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) ContactX-ray diffraction2.292005-05-17
1413KTU|1|B+ 3KTU|1|CDNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*AP*(FDG)P*GP*TP*CP*TP*AP*C)-3')synthetic constructStructure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNAX-ray diffraction2.32010-07-14
1422KTQ|1|D+ 2KTQ|1|BDNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3')OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUSX-ray diffraction2.31999-01-13
1431F4R|1|D+ 1F4R|1|EDNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDA)P*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNAX-ray diffraction2.42000-12-11
1441F6O|1|D+ 1F6O|1|EDNA (5'-D(*GP*AP*CP*AP*TP*GP*(YRR)P*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNAX-ray diffraction2.42000-12-11
1451ERI|1|BDNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGEX-ray diffraction2.51995-02-07
1464KTQ|1|C+ 4KTQ|1|BDNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3')BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNAX-ray diffraction2.51999-01-13
1471DIZ|1|C+ 1DIZ|1|DDNA (5'-D(*GP*AP*CP*AP*TP*GP*AP*(NRI)P*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')Escherichia coliCRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-ray diffraction2.52000-03-20
1483E54|1|C+ 3E54|1|E+ 3E54|1|D+ 3E54|1|FDNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(*DTP*DTP*DGP*DGP*DCP*DTP*DAP*DCP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(P*DGP*DGP*DTP*DAP*DGP*DCP*DCP*DAP*DA)-3'), DNA (5'-D(P*DGP*DAP*DGP*DAP*DGP*DTP*DCP*DAP*DG)-3')Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNAX-ray diffraction2.52008-12-30
1491F0O|1|C+ 1F0O|1|D(5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C-3')PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITEX-ray diffraction2.52000-11-06
1501DIZ|1|E+ 1DIZ|1|FDNA (5'-D(*GP*AP*CP*AP*TP*GP*AP*(NRI)P*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')Escherichia coliCRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-ray diffraction2.52000-03-20
1511QRH|1|M5'-(TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G*)-3'X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 AX-ray diffraction2.51999-06-23
1521D31|1|A+ 1D31|1|BDNA (5'-D(*CP*GP*CP*AP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')THE THREE-DIMENSIONAL STRUCTURES OF BULGE-CONTAINING DNA FRAGMENTSX-ray diffraction2.61992-04-15
1532OQ4|1|C+ 2OQ4|1|D5'-D(*G*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3', 5'-D(*C*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrateX-ray diffraction2.62008-02-26
1541MHT|1|C+ 1MHT|1|BDNA (5'-D(*TP*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(P*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3')COVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S-ADENOSYL-L-HOMOCYSTEINEX-ray diffraction2.61995-06-03
1551PVI|1|C+ 1PVI|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3')STRUCTURE OF PVUII ENDONUCLEASE WITH COGNATE DNAX-ray diffraction2.61995-02-14
1562OQ4|1|E+ 2OQ4|1|F5'-D(*G*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3', 5'-D(*C*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrateX-ray diffraction2.62008-02-26
1571QRI|1|M5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN E144D MUTATION AT 2.7 AX-ray diffraction2.61999-06-23
1582I9K|1|C+ 2I9K|1|D5'-D(*T*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'Engineered Extrahelical Base Destabilization Enhances Sequence Discrimination of DNA Methyltransferase M.HhaIX-ray diffraction2.652006-10-10
1593MHT|1|D+ 3MHT|1|CDNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3')TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH UNMODIFIED DNA AND ADOHCYX-ray diffraction2.71997-01-27
1604MHT|1|D+ 4MHT|1|CDNA (5'-D(*TP*GP*AP*TP*AP*GP*(5CM)P*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(*GP*AP*TP*AP*GP*(5CM)P*GP*CP*TP*AP*TP*C)-3')TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH NATIVE DNA AND ADOHCYX-ray diffraction2.71997-01-27
1611BNK|1|D+ 1BNK|1|EDNA (5'-D(*GP*AP*CP*AP*TP*GP*YRRP*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')HUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNAX-ray diffraction2.71998-10-21
1622Z6U|1|D+ 2Z6U|1|CDNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3')Ternary structure of the Glu119Ala M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcyX-ray diffraction2.722007-11-20
1631VAS|1|B+ 1VAS|1|CDNA (5'-D(*AP*TP*CP*GP*CP*GP*TP*TP*GP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*CP*AP*AP*CP*GP*CP*GP*A)-3')ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITIONX-ray diffraction2.751996-01-31
1642ZCJ|1|D+ 2ZCJ|1|CDNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3')Ternary structure of the Glu119Gln M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcyX-ray diffraction2.752007-12-04
1652PIS|1|A+ 2PIS|1|BDNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3')Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-ray diffraction2.82007-10-30
1662PIS|1|E+ 2PIS|1|FDNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3')Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-ray diffraction2.82007-10-30
1672PIS|1|G+ 2PIS|1|HDNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3')Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-ray diffraction2.82007-10-30
1682PIS|1|I+ 2PIS|1|JDNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3')Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-ray diffraction2.82007-10-30
1691ODH|1|C+ 1ODH|1|D5'-D(*CP*GP*AP*TP*GP*CP*GP*GP*GP*TP *GP*CP*A)-3', 5'-D(*TP*GP*CP*AP*CP*CP*CP*GP*CP*AP *TP*CP*G)-3'Structure of the GCM domain bound to DNAX-ray diffraction2.852003-04-08
1702Z6A|1|D+ 2Z6A|1|CDNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3')synthetic constructS-Adenosyl-L-methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates during DNA Cytosine MethylationX-ray diffraction2.882007-08-21
1711ZJG|1|A+ 1ZJG|1|B5'-D(*AP*TP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*T)-3', 5'-D(*TP*AP*GP*CP*CP*CP*CP*GP*CP*CP*CP*CP*A)-3'13mer-coX-ray diffraction32005-05-10

Release history

Release0.22
Date2011-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
1
1Y8Z|1|C+1Y8Z|1|D		alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a HMU base at 1.9 A resolutionX-RAY DIFFRACTION1.913enzyme,transferase
2
3BKZ|1|B+3BKZ|1|C		X-ray structure of E coli AlkB crosslinked to dsDNA in the active siteX-RAY DIFFRACTION1.6513B-form double helix,double helix,feature,mispair,structureenzyme,oxidoreductase
3
3H8X|1|B+3H8X|1|C		Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-RAY DIFFRACTION1.9513enzyme,oxidoreductase
4
3O1O|1|B+3O1O|1|C		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.9213enzyme,oxidoreductase
5
3O1M|1|B+3O1M|1|C		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.7513enzyme,oxidoreductase
6
3O1P|1|B+3O1P|1|C		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.5113enzyme,oxidoreductase
7
3BI3|1|B+3BI3|1|C		X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactorsX-RAY DIFFRACTION1.913enzyme,oxidoreductase
8
3O1R|1|C+3O1R|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.7713enzyme,oxidoreductase
9
3O1U|1|C+3O1U|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.5413enzyme,oxidoreductase
10
3O1T|1|C+3O1T|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.4813enzyme,oxidoreductase
11
3O1V|1|C+3O1V|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.913enzyme,oxidoreductase
12
3O1S|1|C+3O1S|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.5813enzyme,oxidoreductase
13
3BIE|1|C+3BIE|1|B		X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KGX-RAY DIFFRACTION1.6813enzyme,oxidoreductase
14
2FCC|1|C+2FCC|1|D		Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-RAY DIFFRACTION2.313double helix,structureenzyme,hydrolase,nuclease
15
2FCC|1|E+2FCC|1|F		Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-RAY DIFFRACTION2.313double helix,structureenzyme,hydrolase,nuclease
16
1VAS|1|B+1VAS|1|C		ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITIONX-RAY DIFFRACTION2.7513enzyme,hydrolase,nuclease
17
3QE9|1|C		Crystal structure of human exonuclease 1 Exo1 (D173A) in complex with DNA (complex I)X-RAY DIFFRACTION2.5117B-form double helix,double helix,structureenzyme,hydrolase,nuclease
18
3QE9|1|A		Crystal structure of human exonuclease 1 Exo1 (D173A) in complex with DNA (complex I)X-RAY DIFFRACTION2.5128B-form double helix,double helix,structureenzyme,hydrolase,nuclease
19
1IXY|1|C+1IXY|1|E		Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION2.513enzyme,transferase
20
1IXY|1|D+1IXY|1|F		Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION2.513enzyme,transferase
21
1M5R|1|C+1M5R|1|E		Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION1.813enzyme,transferase
22
1SXP|1|C+1SXP|1|D		BGT in complex with a 13mer DNA containing a central A:G mismatchX-RAY DIFFRACTION2.513enzyme,transferase
23
1Y6F|1|C+1Y6F|1|D		alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic siteX-RAY DIFFRACTION2.413enzyme,transferase
24
1M5R|1|D+1M5R|1|F		Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION1.813enzyme,transferase
25
1Y6G|1|C+1Y6G|1|D		alpha-glucosyltransferase in complex with UDP and a 13_mer DNA containing a HMU base at 2.8 A resolutionX-RAY DIFFRACTION2.813enzyme,transferase
26
3MHT|1|D+3MHT|1|C		TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH UNMODIFIED DNA AND ADOHCYX-RAY DIFFRACTION2.713B-form double helix,double helix,structureenzyme,methylase,transferase
27
1MHT|1|C+1MHT|1|B		COVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S-ADENOSYL-L-HOMOCYSTEINEX-RAY DIFFRACTION2.613B-form double helix,double helix,structureenzyme,methylase,transferase
28
4MHT|1|D+4MHT|1|C		TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH NATIVE DNA AND ADOHCYX-RAY DIFFRACTION2.713B-form double helix,double helix,structureenzyme,methylase,transferase
29
2HR1|1|D+2HR1|1|C		Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcyX-RAY DIFFRACTION1.9613B-form double helix,double helix,structureenzyme,methylase,transferase
30
2Z6U|1|D+2Z6U|1|C		Ternary structure of the Glu119Ala M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcyX-RAY DIFFRACTION2.7213B-form double helix,double helix,structureenzyme,methylase,transferase
31
2ZCJ|1|D+2ZCJ|1|C		Ternary structure of the Glu119Gln M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcyX-RAY DIFFRACTION2.7513B-form double helix,double helix,structureenzyme,methylase,transferase
32
2Z6A|1|D+2Z6A|1|C		S-Adenosyl-L-methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates during DNA Cytosine MethylationX-RAY DIFFRACTION2.8813B-form double helix,double helix,structureenzyme,methylase,transferase
33
3GYH|1|Y+3GYH|1|Z		Crystal Structure Analysis of S. Pombe ATL in complex with damaged DNA containing POBX-RAY DIFFRACTION2.813DNA replication/repair,regulatory
34
3GX4|1|Y+3GX4|1|Z		Crystal Structure Analysis of S. Pombe ATL in complex with DNAX-RAY DIFFRACTION2.713DNA replication/repair,regulatory
35
1DUX|1|A+1DUX|1|B		ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-RAY DIFFRACTION2.113DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
36
1DUX|1|D+1DUX|1|E		ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-RAY DIFFRACTION2.113DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
37
1LLM|1|A+1LLM|1|B		Crystal Structure of a Zif23-GCN4 Chimera Bound to DNAX-RAY DIFFRACTION1.513B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
38
3E6C|1|A+3E6C|1|B		CprK OCPA DNA ComplexX-RAY DIFFRACTION1.813B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
39
1MEY|1|A+1MEY|1|B+1MEY|1|D+1MEY|1|E		CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNAX-RAY DIFFRACTION2.213B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
40
1GD2|1|C+1GD2|1|D		CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-RAY DIFFRACTION213B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
41
1GD2|1|A+1GD2|1|B		CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-RAY DIFFRACTION213B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
42
3OHA|1|T+3OHA|1|P		Yeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesionX-RAY DIFFRACTION213double helix,structureenzyme,polymerase,transferase
43
3PVV|1|F		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-RAY DIFFRACTION224B-form double helix,double helix,structureDNA replication/repair,regulatory
44
3PVP|1|F		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-RAY DIFFRACTION2.318B-form double helix,double helix,structureDNA replication/repair,regulatory
45
3PVP|1|D		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-RAY DIFFRACTION2.319B-form double helix,double helix,structureDNA replication/repair,regulatory
46
3PVV|1|D		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-RAY DIFFRACTION226B-form double helix,double helix,structureDNA replication/repair,regulatory
47
1YO5|1|A+1YO5|1|B		Analysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory siteX-RAY DIFFRACTION213B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
48
3RBD|1|H		Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.50215B-form double helix,double helix,structureenzyme,polymerase,transferase
49
2PIS|1|E+2PIS|1|F		Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-RAY DIFFRACTION2.813B-form double helix,double helix,structure
50
1SXQ|1|C+1SXQ|1|E		BGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,transferase
51
1SXQ|1|D+1SXQ|1|F		BGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,transferase
52
3GFI|1|D+3GFI|1|E		Crystal structure of ST1710 complexed with its promoter DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
53
3RB4|1|D		Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.80523B-form double helix,double helix,structureenzyme,polymerase,transferase
54
3RBD|1|D		Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.50222B-form double helix,double helix,structureenzyme,polymerase,transferase
55
3RBE|1|D		Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.814B-form double helix,double helix,structureenzyme,polymerase,transferase
56
3RB6|1|D		Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.719B-form double helix,double helix,structureenzyme,polymerase,transferase
57
3RB3|1|D		Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 1-methylguanine (m1g) lesionX-RAY DIFFRACTION2.814enzyme,polymerase,transferase
58
3PR5|1|P		Dpo4 Y12A mutant incorporating ADP opposite template dTX-RAY DIFFRACTION2.423B-form double helix,double helix,structureenzyme,polymerase,transferase
59
3PR4|1|P		Dpo4 Y12A mutant incorporating dADP opposite template dTX-RAY DIFFRACTION2.6522B-form double helix,double helix,structureenzyme,polymerase,transferase
60
3QZ8|1|P		TT-4 ternary complex of Dpo4X-RAY DIFFRACTION1.99933B-form double helix,double helix,structureenzyme,polymerase,transferase
61
3QZ7|1|P		T-3 ternary complex of Dpo4X-RAY DIFFRACTION1.99819B-form double helix,double helix,structureenzyme,polymerase,transferase
62
1ODH|1|C+1ODH|1|D		Structure of the GCM domain bound to DNAX-RAY DIFFRACTION2.8513B-form double helix,double helix,structureregulatory,transcription
63
3L2C|1|B+3L2C|1|C		Crystal Structure of the DNA Binding Domain of FOXO4 Bound to DNAX-RAY DIFFRACTION1.86813B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
64
2UZK|1|B+2UZK|1|E		Crystal structure of the human FOXO3a-DBD bound to DNAX-RAY DIFFRACTION2.713double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
65
2UZK|1|D+2UZK|1|F		Crystal structure of the human FOXO3a-DBD bound to DNAX-RAY DIFFRACTION2.713double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
66
1YF3|1|C+1YF3|1|D		T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) ContactX-RAY DIFFRACTION2.2913enzyme,methylase,transferase
67
3RAQ|1|D		Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesionX-RAY DIFFRACTION2.2535enzyme,polymerase,transferase
68
3RAX|1|D		Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesionX-RAY DIFFRACTION1.89137B-form double helix,double helix,structureenzyme,polymerase,transferase
69
3KOV|1|C+3KOV|1|D		Structure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factorsX-RAY DIFFRACTION2.913B-form double helix,double helix,structureDNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription
70
3KOV|1|K+3KOV|1|L		Structure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factorsX-RAY DIFFRACTION2.913B-form double helix,double helix,structureDNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription
71
3G0R|1|G+3G0R|1|K		Complex of Mth0212 and an 8bp dsDNA with distorted endsX-RAY DIFFRACTION2.413B-form double helix,double helix,feature,mispair,structureenzyme,hydrolase,nuclease
72
3E54|1|C+3E54|1|E+3E54|1|D+3E54|1|F		Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNAX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
73
3QEB|1|A		Crystal structure of human exonuclease 1 Exo1 (WT) in complex with DNA and Mn2+ (complex III)X-RAY DIFFRACTION312double helix,structureenzyme,hydrolase,nuclease
74
1A73|1|C+1A73|1|E+1A73|1|D+1A73|1|F		INTRON-ENCODED ENDONUCLEASE I-PPOI COMPLEXED WITH DNAX-RAY DIFFRACTION1.813double helix,structureenzyme,hydrolase,nuclease
75
1WTE|1|X+1WTE|1|Y		Crystal structure of type II restrcition endonuclease, EcoO109I complexed with cognate DNAX-RAY DIFFRACTION1.913double helix,structureenzyme,hydrolase,nuclease
76
3PVI|1|C+3PVI|1|D		D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSISX-RAY DIFFRACTION1.5913double helix,structureenzyme,hydrolase,nuclease
77
2PVI|1|C+2PVI|1|D		PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNAX-RAY DIFFRACTION1.7613double helix,structureenzyme,hydrolase,nuclease
78
1PVI|1|C+1PVI|1|D		STRUCTURE OF PVUII ENDONUCLEASE WITH COGNATE DNAX-RAY DIFFRACTION2.613double helix,structureenzyme,hydrolase,nuclease
79
1F0O|1|C+1F0O|1|D		PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITEX-RAY DIFFRACTION2.513double helix,structureenzyme,hydrolase,nuclease
80
1EYU|1|C+1EYU|1|D		HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6X-RAY DIFFRACTION1.7813double helix,structureenzyme,hydrolase,nuclease
81
1QRH|1|M		X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 AX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
82
1QRI|1|M		X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN E144D MUTATION AT 2.7 AX-RAY DIFFRACTION2.613B-form double helix,double helix,structureenzyme,hydrolase,nuclease
83
1ERI|1|B		X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGEX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
84
1CKQ|1|B		PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEXX-RAY DIFFRACTION1.8513double helix,structureenzyme,hydrolase,nuclease
85
1CL8|1|B		A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P)X-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,hydrolase,nuclease
86
2OXV|1|C		Structure of the A138T promiscuous mutant of the EcoRI restriction endonuclease bound to its cognate recognition site.X-RAY DIFFRACTION1.9513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
87
1DC1|1|C+1DC1|1|W		RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLDX-RAY DIFFRACTION1.713double helix,structureenzyme,hydrolase,nuclease
88
1YQM|1|B+1YQM|1|C		Catalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNAX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase
89
1YQL|1|B+1YQL|1|C		Catalytically inactive hOGG1 crosslinked with 7-deaza-8-azaguanine containing DNAX-RAY DIFFRACTION2.613B-form double helix,double helix,structureenzyme,hydrolase
90
3KTU|1|B+3KTU|1|C		Structure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNAX-RAY DIFFRACTION2.313B-form double helix,double helix,structureenzyme,hydrolase
91
3BTZ|1|B+3BTZ|1|C		Crystal structure of human ABH2 cross-linked to dsDNAX-RAY DIFFRACTION313B-form double helix,double helix,structureenzyme,oxidoreductase
92
1BNK|1|D+1BNK|1|E		HUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNAX-RAY DIFFRACTION2.713B-form double helix,double helix,structureenzyme,hydrolase
93
1F6O|1|D+1F6O|1|E		CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNAX-RAY DIFFRACTION2.413B-form double helix,double helix,structureenzyme,hydrolase
94
1F4R|1|D+1F4R|1|E		CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNAX-RAY DIFFRACTION2.413B-form double helix,double helix,structureenzyme,hydrolase
95
3QI5|1|C		Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-RAY DIFFRACTION2.232enzyme,hydrolase
96
3QI5|1|E		Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-RAY DIFFRACTION2.230enzyme,hydrolase
97
3QI5|1|F		Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-RAY DIFFRACTION2.229enzyme,hydrolase
98
3QI5|1|D		Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-RAY DIFFRACTION2.230enzyme,hydrolase
99
3RB6|1|H		Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.713B-form double helix,double helix,structureenzyme,polymerase,transferase
100
3RAX|1|H		Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesionX-RAY DIFFRACTION1.89135B-form double helix,double helix,structureenzyme,polymerase,transferase
101
3RAQ|1|H		Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesionX-RAY DIFFRACTION2.2523enzyme,polymerase,transferase
102
1J1V|1|B+1J1V|1|C		Crystal structure of DnaA domainIV complexed with DnaAbox DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureDNA replication/repair,regulatory
103
3PVP|1|C		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-RAY DIFFRACTION2.321B-form double helix,double helix,structureDNA replication/repair,regulatory
104
3PVV|1|C		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-RAY DIFFRACTION223B-form double helix,double helix,structureDNA replication/repair,regulatory
105
3PVP|1|E		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-RAY DIFFRACTION2.318B-form double helix,double helix,structureDNA replication/repair,regulatory
106
3PVV|1|E		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-RAY DIFFRACTION232B-form double helix,double helix,structureDNA replication/repair,regulatory
107
1U8B|1|E+1U8B|1|D		Crystal structure of the methylated N-ADA/DNA complexX-RAY DIFFRACTION2.113B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription
108
4KTQ|1|C+4KTQ|1|B		BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNAX-RAY DIFFRACTION2.513double helix,structureenzyme,polymerase,transferase
109
2KTQ|1|D+2KTQ|1|B		OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUSX-RAY DIFFRACTION2.313enzyme,polymerase,transferase
110
3PO5|1|C		Structure of a mutant of the large fragment of DNA polymerase I from Thermus Auqaticus in complex with an abasic site and ddATPX-RAY DIFFRACTION2.3936B-form double helix,double helix,structureenzyme,polymerase,transferase
111
1PP7|1|E+1PP7|1|F		Crystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin InrX-RAY DIFFRACTION2.4513B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
112
2IRF|1|D+2IRF|1|C		CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-RAY DIFFRACTION2.213B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
113
2IRF|1|F+2IRF|1|A		CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-RAY DIFFRACTION2.213B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
114
2IRF|1|E+2IRF|1|B		CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-RAY DIFFRACTION2.213B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
115
1D31|1|A+1D31|1|B		THE THREE-DIMENSIONAL STRUCTURES OF BULGE-CONTAINING DNA FRAGMENTSX-RAY DIFFRACTION2.613double helix,structure
116
1OE5|1|F+1OE5|1|E		Xenopus SMUG1, an anti-mutator uracil-DNA GlycosylaseX-RAY DIFFRACTION2.313enzyme,hydrolase
117
2ZO1|1|D+2ZO1|1|E		Mouse NP95 SRA domain DNA specific complex 2X-RAY DIFFRACTION1.9613B-form double helix,double helix,structureenzyme,ligase
118
2ZO0|1|D+2ZO0|1|E		mouse NP95 SRA domain DNA specific complex 1X-RAY DIFFRACTION2.1913B-form double helix,double helix,structureenzyme,ligase
119
1T7P|1|T+1T7P|1|P		T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXINX-RAY DIFFRACTION2.213double helix,structureenzyme,oxidoreductase,polymerase,transferase
120
3EYZ|1|C+3EYZ|1|B		Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form)X-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,polymerase,transferase
121
4BDP|1|T+4BDP|1|P		CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUESX-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,polymerase,transferase
122
3RBE|1|H		Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.810B-form double helix,double helix,structureenzyme,polymerase,transferase
123
1SKM|1|C+1SKM|1|D		HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target siteX-RAY DIFFRACTION2.213B-form double helix,double helix,structureenzyme,methylase,transferase
124
2UYC|1|C+2UYC|1|D		HhaI DNA methyltransferase R163N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-RAY DIFFRACTION213double helix,structureenzyme,methylase,transferase
125
2UZ4|1|C+2UZ4|1|D		HhaI DNA methyltransferase R165N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-RAY DIFFRACTION2.113double helix,structureenzyme,methylase,transferase
126
2C7Q|1|C+2C7Q|1|D		HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine outside the recognition sequence (paired with G) and SAHX-RAY DIFFRACTION1.8513enzyme,methylase,transferase
127
2C7O|1|C+2C7O|1|D		HhaI DNA methyltransferase complex with 13mer oligonucleotide containing 2-aminopurine adjacent to the target base (PCGC:GMGC) and SAHX-RAY DIFFRACTION1.913B-form double helix,double helix,structureenzyme,methylase,transferase
128
2I9K|1|C+2I9K|1|D		Engineered Extrahelical Base Destabilization Enhances Sequence Discrimination of DNA Methyltransferase M.HhaIX-RAY DIFFRACTION2.6513B-form double helix,double helix,structureenzyme,methylase,transferase
129
1FJX|1|C+1FJX|1|D		STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCYX-RAY DIFFRACTION2.2613B-form double helix,double helix,structureenzyme,methylase,transferase
130
2UYH|1|C+2UYH|1|D		HhaI DNA methyltransferase S87Q-Q237S mutant complex with 13mer GCGC- GMGC oligonucleotide and SAHX-RAY DIFFRACTION2.6313enzyme,methylase,transferase
131
3RB4|1|H		Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.80512B-form double helix,double helix,structureenzyme,polymerase,transferase
132
2PIS|1|G+2PIS|1|H		Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-RAY DIFFRACTION2.813B-form double helix,double helix,structure
133
2PIS|1|A+2PIS|1|B		Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-RAY DIFFRACTION2.813B-form double helix,double helix,structure
134
3MR2|1|T+3MR2|1|P		Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm)X-RAY DIFFRACTION1.8313B-form double helix,double helix,structureenzyme,polymerase,transferase
135
2PIS|1|I+2PIS|1|J		Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-RAY DIFFRACTION2.813B-form double helix,double helix,structure
136
2HVH|1|C+2HVH|1|B		ddCTP:O6MeG pair in the polymerase active site (0 position)X-RAY DIFFRACTION2.49213B-form double helix,double helix,structureenzyme,polymerase,transferase
137
2HVI|1|C+2HVI|1|B		ddCTP:G pair in the polymerase active site (0 position)X-RAY DIFFRACTION1.9813B-form double helix,double helix,structureenzyme,polymerase,transferase
138
2HVI|1|F+2HVI|1|E		ddCTP:G pair in the polymerase active site (0 position)X-RAY DIFFRACTION1.9813B-form double helix,double helix,structureenzyme,polymerase,transferase
139
2HVH|1|F+2HVH|1|E		ddCTP:O6MeG pair in the polymerase active site (0 position)X-RAY DIFFRACTION2.49213B-form double helix,double helix,structureenzyme,polymerase,transferase
140
2HHW|1|F+2HHW|1|E		ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-RAY DIFFRACTION1.8813double helix,structureenzyme,polymerase,transferase
141
2HHW|1|C+2HHW|1|B		ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-RAY DIFFRACTION1.8813double helix,structureenzyme,polymerase,transferase
142
2HHX|1|C+2HHX|1|B		O6-methyl-guanine in the polymerase template preinsertion siteX-RAY DIFFRACTION2.2613B-form double helix,double helix,structureenzyme,polymerase,transferase
143
3A46|1|E+3A46|1|F		Crystal structure of MvNei1/THF complexX-RAY DIFFRACTION2.213double helix,structureenzyme,hydrolase
144
3A46|1|C+3A46|1|D		Crystal structure of MvNei1/THF complexX-RAY DIFFRACTION2.213double helix,structureenzyme,hydrolase
145
1K82|1|H+1K82|1|L		Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,hydrolase
146
1K82|1|E+1K82|1|I		Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,hydrolase
147
1K82|1|G+1K82|1|K		Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,hydrolase
148
1K82|1|F+1K82|1|J		Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,hydrolase
149
1DIZ|1|E+1DIZ|1|F		CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase
150
1DIZ|1|C+1DIZ|1|D		CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase
151
1QUM|1|D+1QUM|1|C+1QUM|1|B		CRYSTAL STRUCTURE OF ESCHERICHIA COLI ENDONUCLEASE IV IN COMPLEX WITH DAMAGED DNAX-RAY DIFFRACTION1.5513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
152
3I0X|1|C+3I0X|1|D		Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing adenine opposite to 8-oxoGX-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,hydrolase
153
3I0W|1|B+3I0W|1|C		Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoGX-RAY DIFFRACTION1.7313B-form double helix,double helix,structureenzyme,hydrolase
154
3GV5|1|T+3GV5|1|P		Human DNA polymerase iota in complex with T template DNA and incoming ddADPX-RAY DIFFRACTION213enzyme,polymerase,transferase
155
3GV5|1|F+3GV5|1|E		Human DNA polymerase iota in complex with T template DNA and incoming ddADPX-RAY DIFFRACTION213enzyme,polymerase,transferase
156
1ZJG|1|A+1ZJG|1|B		13mer-coX-RAY DIFFRACTION313A-form double helix,double helix,structure
157
1K3W|1|B+1K3W|1|C		Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNAX-RAY DIFFRACTION1.4213B-form double helix,double helix,structureenzyme,hydrolase,nuclease
158
1K3X|1|B+1K3X|1|C		Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNAX-RAY DIFFRACTION1.2513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
159
2OQ4|1|C+2OQ4|1|D		Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrateX-RAY DIFFRACTION2.613double helix,structureenzyme,hydrolase,nuclease
160
1KFV|1|D+1KFV|1|E		Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA.X-RAY DIFFRACTION2.5513B-form double helix,double helix,structureenzyme,hydrolase
161
1KFV|1|G+1KFV|1|H		Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA.X-RAY DIFFRACTION2.5513B-form double helix,double helix,structureenzyme,hydrolase
162
2OQ4|1|E+2OQ4|1|F		Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrateX-RAY DIFFRACTION2.613double helix,structureenzyme,hydrolase,nuclease
163
3BUC|1|B+3BUC|1|C		X-ray structure of human ABH2 bound to dsDNA with Mn(II) and 2KGX-RAY DIFFRACTION2.5913enzyme,oxidoreductase
164
3BTY|1|B+3BTY|1|C		Crystal structure of human ABH2 bound to dsDNA containing 1meA through cross-linking away from active siteX-RAY DIFFRACTION2.3513enzyme,oxidoreductase
165
3BU0|1|B+3BU0|1|C		crystal structure of human ABH2 cross-linked to dsDNA with cofactorsX-RAY DIFFRACTION2.513enzyme,oxidoreductase
166
3BTX|1|B+3BTX|1|C		X-ray structure of human ABH2 bound to dsDNA through active site cross-linkingX-RAY DIFFRACTION213enzyme,oxidoreductase
167
3H8R|1|B+3H8R|1|C		Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-RAY DIFFRACTION1.7713enzyme,oxidoreductase
168
3H8O|1|B+3H8O|1|C		Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-RAY DIFFRACTION213enzyme,oxidoreductase
169
3OS0|1|t		PFV strand transfer complex (STC) at 2.81 A resolutionX-RAY DIFFRACTION2.8113enzyme,recombinase
170
1PUY|1|B		1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-RAY DIFFRACTION1.513B-form double helix,double helix,structure
171
1PUY|1|A		1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-RAY DIFFRACTION1.513B-form double helix,double helix,structure

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