Equivalence class DNA_3.0_04418.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1NK0|1|C+ 1NK0|1|B (rep) | DNA TEMPLATE STRAND, DNA PRIMER STRAND | ADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 1.7 | 2004-03-30 | ||||
| 2 | 2DP6|1|C+ 2DP6|1|D | 5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*CP*GP*CP*AP*AP*CP*A)-3' | Crystal structure of uracil-DNA glycosylase in complex with AP:C containing DNA | X-ray diffraction | 1.8 | 2007-05-22 | ||||
| 3 | 3MFI|1|T+ 3MFI|1|P | 5'-D(*TP*AP*AP*(TTD)P*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3' | DNA Polymerase Eta in Complex With a cis-syn Thymidine Dimer | X-ray diffraction | 1.76 | 2010-06-23 | ||||
| 4 | 2DEM|1|C+ 2DEM|1|D | 5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*AP*GP*CP*AP*AP*CP*A)-3' | synthetic construct | Crystal structure of Uracil-DNA glycosylase in complex with AP:A containing DNA | X-ray diffraction | 1.95 | 2007-04-24 | |||
| 5 | 1U4B|1|C+ 1U4B|1|B | DNA template strand with 8-oxoguanine, DNA primer strand | Extension of an adenine-8oxoguanine mismatch | X-ray diffraction | 1.6 | 2004-09-14 | ||||
| 6 | 1NKC|1|B+ 1NKC|1|C | DNA PRIMER STRAND, DNA TEMPLATE STRAND | A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP. | X-ray diffraction | 1.8 | 2004-03-30 | ||||
| 7 | 1NK8|1|C+ 1NK8|1|B | DNA TEMPLATE STRAND, DNA PRIMER STRAND | A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP. | X-ray diffraction | 1.9 | 2004-03-30 | ||||
| 8 | 1NJX|1|C+ 1NJX|1|B | DNA TEMPLATE STRAND, DNA PRIMER STRAND | THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 1.65 | 2004-03-30 | ||||
| 9 | 1NK7|1|C+ 1NK7|1|B | DNA TEMPLATE STRAND, DNA PRIMER STRAND | GUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 1.9 | 2004-03-30 | ||||
| 10 | 2DDG|1|C+ 2DDG|1|D | 5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*GP*GP*CP*AP*AP*CP*A)-3' | Crystal structure of uracil-DNA glycosylase in complex with AP:G containing DNA | X-ray diffraction | 2.1 | 2007-02-13 | ||||
| 11 | 3FDQ|1|C+ 3FDQ|1|D | 5'-D(*AP*TP*TP*TP*TP*TP*TP*AP*AP*AP*AP*AP*AP*AP*T)-3', 5'-D(*TP*AP*TP*TP*TP*TP*TP*TP*TP*AP*AP*AP*AP*AP*A)-3' | Recognition of AT-rich DNA binding sites by the MogR Repressor | X-ray diffraction | 1.75 | 2009-06-02 | ||||
| 12 | 3CVU|1|C+ 3CVU|1|D | DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3') | Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion | X-ray diffraction | 2 | 2008-11-04 | ||||
| 13 | 1U45|1|C+ 1U45|1|B | DNA template strand with 8-oxoguanine, DNA primer strand | 8oxoguanine at the pre-insertion site of the polymerase active site | X-ray diffraction | 2.01 | 2004-09-14 | ||||
| 14 | 1RH6|1|C+ 1RH6|1|D | 5'-D(*CP*TP*AP*TP*GP*TP*AP*GP*TP*CP*TP*GP*TP*TP*G)-3', 5'-D(P*CP*AP*AP*CP*AP*GP*AP*CP*TP*AP*CP*AP*TP*AP*G)-3' | Bacteriophage Lambda Excisionase (Xis)-DNA Complex | X-ray diffraction | 1.7 | 2004-06-29 | ||||
| 15 | 1NK9|1|C+ 1NK9|1|B | DNA TEMPLATE STRAND, DNA PRIMER STRAND | A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP. | X-ray diffraction | 1.9 | 2004-03-30 | ||||
| 16 | 1NJW|1|C+ 1NJW|1|B | DNA TEMPLATE STRAND, DNA PRIMER STRAND | GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 1.9 | 2004-03-30 | ||||
| 17 | 3CVV|1|C+ 3CVV|1|D | DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3') | Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion and F0 cofactor | X-ray diffraction | 2.1 | 2009-06-16 | ||||
| 18 | 2HHQ|1|C+ 2HHQ|1|B | 5'-D(*GP*CP*CP*TP*GP*AP*CP*TP*CP*GP*TP*AP*TP*GP*A)-3', 5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3' | O6-methyl-guanine:T pair in the polymerase-10 basepair position | X-ray diffraction | 1.8 | 2006-12-12 | ||||
| 19 | 3BQ1|1|T+ 3BQ1|1|P | DNA (5'-D(*DT*DTP*DCP*DCP*DGP*DCP*DCP*DCP*DGP*DGP*DCP*DTP*DTP*DCP*DC)-3'), DNA (5'-D(*DGP*DAP*DAP*DGP*DCP*DCP*DGP*DGP*DCP*DG)-3') | Insertion ternary complex of Dbh DNA polymerase | X-ray diffraction | 2.7 | 2008-04-08 | ||||
| 20 | 1NKB|1|C+ 1NKB|1|B | DNA TEMPLATE STRAND, DNA PRIMER STRAND | A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP. | X-ray diffraction | 2 | 2004-03-30 | ||||
| 21 | 2XHI|1|B+ 2XHI|1|C | 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3' | Separation-of-function mutants unravel the dual reaction mode of human 8-oxoguanine DNA glycosylase | X-ray diffraction | 1.55 | 2011-01-26 | ||||
| 22 | 1U48|1|C+ 1U48|1|B | DNA template strand with 8-oxoguanine, DNA primer strand | Extension of a cytosine-8-oxoguanine base pair | X-ray diffraction | 2.1 | 2004-09-14 | ||||
| 23 | 2VS8|1|D+ 2VS8|1|B+ 2VS8|1|C+ 2VS8|1|E | 5'-D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP *CP*TP*TP*AP*C)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP *GP*TP*AP*A)-3', 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP* DGP*DCP*DGP)-3', 5'-D(*CP*CP*GP*GP*CP*AP*AP* GP*GP*CP)-3' | Desulfurococcus mucosus | The crystal structure of I-DmoI in complex with DNA and Mn | X-ray diffraction | 2.1 | 2008-11-11 | |||
| 24 | 2VS8|1|I+ 2VS8|1|G+ 2VS8|1|H+ 2VS8|1|J | 5'-D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP *CP*TP*TP*AP*C)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP *GP*TP*AP*A)-3', 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP* DGP*DCP*DGP)-3', 5'-D(*CP*CP*GP*GP*CP*AP*AP* GP*GP*CP)-3' | Desulfurococcus mucosus | The crystal structure of I-DmoI in complex with DNA and Mn | X-ray diffraction | 2.1 | 2008-11-11 | |||
| 25 | 2VS8|1|N+ 2VS8|1|L+ 2VS8|1|M+ 2VS8|1|O | 5'-D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP *CP*TP*TP*AP*C)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP *GP*TP*AP*A)-3', 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP* DGP*DCP*DGP)-3', 5'-D(*CP*CP*GP*GP*CP*AP*AP* GP*GP*CP)-3' | Desulfurococcus mucosus | The crystal structure of I-DmoI in complex with DNA and Mn | X-ray diffraction | 2.1 | 2008-11-11 | |||
| 26 | 1U47|1|C+ 1U47|1|B | DNA template strand with 8-oxoguanine, DNA primer strand | cytosine-8-Oxoguanine base pair at the polymerase active site | X-ray diffraction | 2 | 2004-09-14 | ||||
| 27 | 2NOH|1|B+ 2NOH|1|C | 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3' | Structure of catalytically inactive Q315A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNA | X-ray diffraction | 2.01 | 2006-11-21 | ||||
| 28 | 1XC9|1|C+ 1XC9|1|B | DNA template strand with benzo[a]pyrene adduct, DNA primer strand | Structure of a high-fidelity polymerase bound to a benzo[a]pyrene adduct that blocks replication | X-ray diffraction | 1.9 | 2004-12-14 | ||||
| 29 | 1NK6|1|C+ 1NK6|1|B | DNA TEMPLATE STRAND, DNA PRIMER STRAND | CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 2.1 | 2004-03-30 | ||||
| 30 | 2WQ6|1|C+ 2WQ6|1|D | 5'-D(*AP*CP*AP*GP*CP*GP*GP*TDYP*CDWP*GP* CP*AP*AP*GP*T)-3', 5'-D(*TP*AP*CP*CP*TP*GP*CP*GP*AP*CP* CP*GP*CP*TP*G)-3' | Structure of the 6-4 photolyase of D. melanogaster in complex with the non-natural N4-methyl T(Dewar)C lesion | X-ray diffraction | 2.3 | 2010-02-23 | ||||
| 31 | 1U49|1|C+ 1U49|1|B | DNA template strand with 8-oxoguanine, DNA primer strand | Adenine-8oxoguanine mismatch at the polymerase active site | X-ray diffraction | 2.15 | 2004-09-14 | ||||
| 32 | 3IAG|1|A+ 3IAG|1|B | 5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*AP*CP*AP*CP*GP*AP*T)-3', 5'-D(*TP*TP*AP*TP*CP*GP*TP*GP*TP*GP*AP*AP*AP*GP*A)-3' | CSL (RBP-Jk) bound to HES-1 nonconsensus site | X-ray diffraction | 2 | 2009-11-10 | ||||
| 33 | 1LWY|1|D+ 1LWY|1|E | 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3' | hOgg1 Borohydride-Trapped Intermediate without 8-oxoguanine | X-ray diffraction | 2.01 | 2003-02-25 | ||||
| 34 | 3BQ0|1|T+ 3BQ0|1|P | DNA (5'-D(*DT*DTP*DCP*DCP*DGP*DCP*DCP*DCP*DGP*DGP*DCP*DTP*DTP*DCP*DC)-3'), DNA (5'-D(*DGP*DAP*DAP*DGP*DCP*DCP*DGP*DGP*DCP*DG)-3') | synthetic construct | Pre-insertion binary complex of Dbh DNA polymerase | X-ray diffraction | 2.6 | 2008-04-08 | |||
| 35 | 1EBM|1|C+ 1EBM|1|D | DNA (5'-D(*GP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3') | CRYSTAL STRUCTURE OF THE HUMAN 8-OXOGUANINE GLYCOSYLASE (HOGG1) BOUND TO A SUBSTRATE OLIGONUCLEOTIDE | X-ray diffraction | 2.1 | 2000-03-20 | ||||
| 36 | 1LWW|1|D+ 1LWW|1|E | 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3' | Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanine | X-ray diffraction | 2.1 | 2003-02-25 | ||||
| 37 | 3KNT|1|E+ 3KNT|1|F | 5'-D(*AP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*TP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3' | Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanine | X-ray diffraction | 2.7 | 2010-02-02 | ||||
| 38 | 3KNT|1|G+ 3KNT|1|H | 5'-D(*AP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*TP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3' | Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanine | X-ray diffraction | 2.7 | 2010-02-02 | ||||
| 39 | 3KNT|1|I+ 3KNT|1|J | 5'-D(*AP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*TP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3' | Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanine | X-ray diffraction | 2.7 | 2010-02-02 | ||||
| 40 | 3KNT|1|K+ 3KNT|1|L | 5'-D(*AP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*TP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3' | Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanine | X-ray diffraction | 2.7 | 2010-02-02 | ||||
| 41 | 1M3Q|1|B+ 1M3Q|1|C | 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(DRZ)P*GP*TP*CP*TP*AP*CP*C)-3' | Crystal Structure of hogg1 D268E Mutant with Base-Excised DNA and 8-aminoguanine | X-ray diffraction | 1.9 | 2004-02-17 | ||||
| 42 | 2NOE|1|B+ 2NOE|1|C | 5'-D(*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*G*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3' | Structure of catalytically inactive G42A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNA | X-ray diffraction | 2.2 | 2006-11-21 | ||||
| 43 | 2NOL|1|B+ 2NOL|1|C | 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3' | Structure of catalytically inactive human 8-oxoguanine glycosylase distal crosslink to oxoG DNA | X-ray diffraction | 2.57 | 2006-11-21 | ||||
| 44 | 2IMW|1|T+ 2IMW|1|S | 5'-D(*TP*AP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3' | Mechanism of Template-Independent Nucleotide Incorporation Catalyzed by a Template-Dependent DNA Polymerase | X-ray diffraction | 2.05 | 2007-01-16 | ||||
| 45 | 2NQJ|1|C+ 2NQJ|1|D | 5'-D(*GP*CP*GP*TP*CP*CP*(3DR)P*CP*GP*AP*CP*GP*AP*CP*G)-3', 5'-D(*CP*GP*TP*CP*GP*TP*CP*GP*GP*GP*GP*AP*CP*GP*C)-3' | Crystal structure of Escherichia coli endonuclease IV (Endo IV) E261Q mutant bound to damaged DNA | X-ray diffraction | 2.45 | 2007-11-06 | ||||
| 46 | 1LWV|1|D+ 1LWV|1|E | 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3' | Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanine | X-ray diffraction | 2.3 | 2003-02-25 | ||||
| 47 | 3BQ2|1|T+ 3BQ2|1|P | DNA (5'-D(*DTP*DTP*DCP*DCP*DGP*DCP*DCP*DCP*DGP*DGP*DCP*DTP*DTP*DCP*DC)-3'), DNA (5'-D(*DGP*DAP*DAP*DGP*DCP*DCP*DGP*DGP*DCP*DGP*DG)-3') | synthetic construct | Post-insertion binary complex of Dbh DNA polymerase | X-ray diffraction | 2.7 | 2008-04-08 | |||
| 48 | 2NOF|1|B+ 2NOF|1|C | 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*C*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3' | Structure of Q315F human 8-oxoguanine glycosylase proximal crosslink to 8-oxoguanine DNA | X-ray diffraction | 2.35 | 2006-11-21 | ||||
| 49 | 2NOI|1|B+ 2NOI|1|C | 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*C*CP*AP*GP*GP*TP*CP*TP*AP*CP*C)-3' | Structure of G42A human 8-oxoguanine glycosylase crosslinked to undamaged G-containing DNA | X-ray diffraction | 2.35 | 2006-11-21 | ||||
| 50 | 3BRG|1|A+ 3BRG|1|B | DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3'), DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3') | CSL (RBP-Jk) bound to DNA | X-ray diffraction | 2.2 | 2008-04-01 | ||||
| 51 | 2RDJ|1|F+ 2RDJ|1|E | DNA (5'-D(P*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)-3'), DNA (5'-D(*DGP*DGP*DGP*DAP*DCP*DCP*DCP*DTP*DTP*DCP*DGP*DAP*DAP*DT)-3') | Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms | X-ray diffraction | 2.2 | 2008-06-24 | ||||
| 52 | 3L4J|1|C+ 3L4J|1|B | DNA (5'-D(*CP*GP*CP*GP*GP*TP*AP*GP*CP*AP*GP*TP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*AP*CP*TP*GP*CP*TP*AP*C)-3') | Topoisomerase II-DNA cleavage complex, apo | X-ray diffraction | 2.48 | 2010-05-26 | ||||
| 53 | 3L4J|1|E+ 3L4J|1|D | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*CP*GP*TP*CP*AP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*TP*GP*AP*CP*GP*AP*TP*)-3') | Topoisomerase II-DNA cleavage complex, apo | X-ray diffraction | 2.48 | 2010-05-26 | ||||
| 54 | 3KMP|1|C+ 3KMP|1|D | 5'-D(P*AP*TP*CP*AP*GP*TP*CP*TP*AP*GP*AP*CP*AP*TP*A)-3', 5'-D(P*GP*TP*AP*TP*GP*TP*CP*TP*AP*GP*AP*CP*TP*GP*A)-3' | Crystal Structure of SMAD1-MH1/DNA complex | X-ray diffraction | 2.7 | 2010-02-23 | ||||
| 55 | 3BRD|1|B+ 3BRD|1|C | DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3'), DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3') | CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, P212121 | X-ray diffraction | 2.21 | 2008-04-01 | ||||
| 56 | 1M3H|1|B+ 1M3H|1|C+ 1M3H|1|D | 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(P*GP*CP*GP*TP*CP*CP*AP*(DDX))-3', 5'-D(P*GP*TP*CP*TP*AP*CP*C)-3' | Crystal Structure of Hogg1 D268E Mutant with Product Oligonucleotide | X-ray diffraction | 2.05 | 2004-04-20 | ||||
| 57 | 1P7H|1|A+ 1P7H|1|B+ 1P7H|1|C+ 1P7H|1|D | 5'-D(*AP*AP*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*A)-3', 5'-D(*TP*TP*TP*GP*GP*AP*AP*AP*GP*TP*CP*CP*CP*CP*A)-3' | Structure of NFAT1 bound as a dimer to the HIV-1 LTR kB element | X-ray diffraction | 2.6 | 2003-09-23 | ||||
| 58 | 2NOZ|1|B+ 2NOZ|1|C | 5'-D(*GP*G*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*G*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3' | Structure of Q315F human 8-oxoguanine glycosylase distal crosslink to 8-oxoguanine DNA | X-ray diffraction | 2.43 | 2006-11-21 | ||||
| 59 | 1HU0|1|D+ 1HU0|1|E | 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3' | CRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED INTERMEDIATE COMPLEX | X-ray diffraction | 2.35 | 2003-02-25 | ||||
| 60 | 2CGP|1|C+ 2CGP|1|B | DNA (5'-D(*AP*TP*TP*AP*AP*TP*GP*TP*GP*AP*CP*AP*TP*AP*T)-3'), DNA (5'-D(*GP*TP*CP*AP*CP*AP*TP*TP*AP*AP*T)-3') | CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE | X-ray diffraction | 2.2 | 1998-02-04 | ||||
| 61 | 1K79|1|B+ 1K79|1|C | DNA (5'-D(*TP*AP*GP*TP*GP*CP*CP*GP*GP*AP*AP*AP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*CP*AP*TP*TP*TP*CP*CP*GP*GP*CP*AP*CP*T)-3') | Ets-1(331-440)+GGAA duplex | X-ray diffraction | 2.4 | 2002-01-04 | ||||
| 62 | 1K79|1|E+ 1K79|1|F | DNA (5'-D(*TP*AP*GP*TP*GP*CP*CP*GP*GP*AP*AP*AP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*CP*AP*TP*TP*TP*CP*CP*GP*GP*CP*AP*CP*T)-3') | Ets-1(331-440)+GGAA duplex | X-ray diffraction | 2.4 | 2002-01-04 | ||||
| 63 | 1TTU|1|B+ 1TTU|1|C | 5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3', 5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3' | Crystal Structure of CSL bound to DNA | X-ray diffraction | 2.85 | 2004-08-31 | ||||
| 64 | 2H1K|1|C+ 2H1K|1|D | 15-mer DNA | Crystal structure of the Pdx1 homeodomain in complex with DNA | X-ray diffraction | 2.42 | 2007-03-20 | ||||
| 65 | 1FN7|1|C+ 1FN7|1|D | DNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*CP*C)-3') | COUPLING OF DAMAGE RECOGNITION AND CATALYSIS BY A HUMAN BASE-EXCISION DNA REPAIR PROTEIN | X-ray diffraction | 2.6 | 2001-04-21 | ||||
| 66 | 2H1K|1|E+ 2H1K|1|F | 15-mer DNA | Crystal structure of the Pdx1 homeodomain in complex with DNA | X-ray diffraction | 2.42 | 2007-03-20 | ||||
| 67 | 1K7A|1|B+ 1K7A|1|C | DNA (5'-D(*TP*AP*GP*TP*GP*CP*CP*GP*GP*AP*GP*AP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*CP*AP*TP*CP*TP*CP*CP*GP*GP*CP*AP*CP*T)-3') | Ets-1(331-440)+GGAG duplex | X-ray diffraction | 2.8 | 2002-01-04 | ||||
| 68 | 1K7A|1|E+ 1K7A|1|F | DNA (5'-D(*TP*AP*GP*TP*GP*CP*CP*GP*GP*AP*GP*AP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*CP*AP*TP*CP*TP*CP*CP*GP*GP*CP*AP*CP*T)-3') | Ets-1(331-440)+GGAG duplex | X-ray diffraction | 2.8 | 2002-01-04 | ||||
| 69 | 1QPI|1|M | DNA (5'-D(*CP*CP*TP*AP*TP*CP*AP*AP*TP*GP*AP*TP*AP*GP*A)-3') | CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEX | X-ray diffraction | 2.5 | 2000-02-28 | ||||
| 70 | 1QPI|1|N | DNA (5'-D(*TP*CP*TP*AP*TP*CP*AP*TP*TP*GP*AP*TP*AP*GP*G)-3') | CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEX | X-ray diffraction | 2.5 | 2000-02-28 | ||||
| 71 | 3CVY|1|C+ 3CVY|1|D | DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3') | Drosophila melanogaster (6-4) photolyase bound to repaired ds DNA | X-ray diffraction | 2.7 | 2008-11-04 | ||||
| 72 | 2IVK|1|E+ 2IVK|1|F | 5'-D(*GP*AP*AP*TP*TP*CP*GP*AP*TP*CP *GP*AP*AP*TP*T)-3', 5'-D(*AP*AP*TP*TP*CP*GP*AP*TP*CP*GP *AP*AP*TP*TP*C)-3' | synthetic construct | Crystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNA | X-ray diffraction | 2.9 | 2007-01-02 | |||
| 73 | 2IVK|1|G+ 2IVK|1|H | 5'-D(*GP*AP*AP*TP*TP*CP*GP*AP*TP*CP *GP*AP*AP*TP*T)-3', 5'-D(*AP*AP*TP*TP*CP*GP*AP*TP*CP*GP *AP*AP*TP*TP*C)-3' | synthetic construct | Crystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNA | X-ray diffraction | 2.9 | 2007-01-02 | |||
| 74 | 2O8B|1|E+ 2O8B|1|F | 5'-D(*GP*AP*AP*CP*CP*GP*CP*GP*CP*GP*CP*TP*AP*GP*G)-3', 5'-D(*CP*CP*TP*AP*GP*CP*GP*TP*GP*CP*GP*GP*TP*TP*C)-3' | human MutSalpha (MSH2/MSH6) bound to ADP and a G T mispair | X-ray diffraction | 2.75 | 2007-06-05 | ||||
| 75 | 3L4K|1|C+ 3L4K|1|B | DNA (5'-D(*CP*GP*CP*GP*GP*TP*AP*GP*CP*AP*GP*TP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*AP*CP*TP*GP*CP*TP*AP*C)-3') | Topoisomerase II-DNA cleavage complex, metal-bound | X-ray diffraction | 2.98 | 2010-05-26 | ||||
| 76 | 3L4K|1|E+ 3L4K|1|D | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*CP*GP*TP*CP*AP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*TP*GP*AP*CP*GP*AP*TP*)-3') | Topoisomerase II-DNA cleavage complex, metal-bound | X-ray diffraction | 2.98 | 2010-05-26 | ||||
| 77 | 1IMH|1|A+ 1IMH|1|B | 5'-D(*TP*TP*GP*CP*TP*GP*GP*AP*AP*AP*AP*AP*TP*AP*G)-3', 5'-D(*AP*AP*CP*TP*AP*TP*TP*TP*TP*TP*CP*CP*AP*GP*C)-3' | TonEBP/DNA COMPLEX | X-ray diffraction | 2.86 | 2002-02-01 | ||||
| 78 | 3A5T|1|C+ 3A5T|1|D | 5'-D(*CP*TP*GP*AP*TP*GP*AP*GP*TP*CP*AP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*TP*GP*AP*CP*TP*CP*AP*TP*CP*AP*G)-3' | Crystal structure of MafG-DNA complex | X-ray diffraction | 2.8 | 2009-10-13 | ||||
| 79 | 1OWR|1|A+ 1OWR|1|B | NFAT1 Monomeric Binding Site, Plus Strand, NFAT1 Monomeric Binding Site, Minus Strand | CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNA | X-ray diffraction | 3 | 2004-02-10 | ||||
| 80 | 1OWR|1|C+ 1OWR|1|D | NFAT1 Monomeric Binding Site, Plus Strand, NFAT1 Monomeric Binding Site, Minus Strand | CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNA | X-ray diffraction | 3 | 2004-02-10 | ||||
| 81 | 1OWR|1|E+ 1OWR|1|F | NFAT1 Monomeric Binding Site, Plus Strand, NFAT1 Monomeric Binding Site, Minus Strand | CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNA | X-ray diffraction | 3 | 2004-02-10 | ||||
| 82 | 2O8D|1|E+ 2O8D|1|F | 5'-D(*GP*AP*AP*CP*CP*GP*CP*GP*CP*GP*CP*TP*AP*GP*G)-3', 5'-D(*CP*CP*TP*AP*GP*CP*GP*(DU)P*GP*CP*GP*GP*TP*TP*C)-3' | human MutSalpha (MSH2/MSH6) bound to ADP and a G dU mispair | X-ray diffraction | 3 | 2007-06-05 | ||||
| 83 | 1OWR|1|G+ 1OWR|1|H | NFAT1 Monomeric Binding Site, Plus Strand, NFAT1 Monomeric Binding Site, Minus Strand | CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNA | X-ray diffraction | 3 | 2004-02-10 | ||||
| 84 | 1O3R|1|C+ 1O3R|1|B | 5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3' | PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES | X-ray diffraction | 3 | 2003-04-08 | ||||
| 85 | 1SKN|1|A+ 1SKN|1|B | DNA (5'-D(*TP*GP*AP*CP*AP*AP*TP*GP*TP*CP*AP*TP*CP*CP*C)-3'), DNA (5'-D(*CP*AP*GP*GP*GP*AP*TP*GP*AP*CP*AP*TP*TP*GP*T)-3') | THE BINDING DOMAIN OF SKN-1 IN COMPLEX WITH DNA: A NEW DNA-BINDING MOTIF | X-ray diffraction | 2.5 | 1998-06-24 | ||||
| 86 | 1O3S|1|C+ 1O3S|1|B | 5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3' | PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES | X-ray diffraction | 3 | 2003-04-08 | ||||
| 87 | 1O3Q|1|C+ 1O3Q|1|B | 5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3' | PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES | X-ray diffraction | 3 | 2003-04-08 | ||||
| 88 | 3BRF|1|B+ 3BRF|1|C | DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3'), DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3') | CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, C2221 | X-ray diffraction | 2.47 | 2008-04-01 | ||||
| 89 | 1DSZ|1|C+ 1DSZ|1|D | DNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*G)-3') | STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1 | X-ray diffraction | 1.7 | 2000-07-10 | ||||
| 90 | 1N39|1|B+ 1N39|1|C | DNA complement strand, DNA inhibitor strand | Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylase | X-ray diffraction | 2.2 | 2003-03-04 | ||||
| 91 | 1N3A|1|B+ 1N3A|1|C | DNA complement strand, DNA inhibitor strand | Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylase | X-ray diffraction | 2.2 | 2003-03-04 | ||||
| 92 | 9ANT|1|C+ 9ANT|1|D | DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3') | ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX | X-ray diffraction | 2.4 | 1998-10-14 | ||||
| 93 | 1OZJ|1|C+ 1OZJ|1|D | Smad binding element | Crystal structure of Smad3-MH1 bound to DNA at 2.4 A resolution | X-ray diffraction | 2.4 | 2004-03-23 | ||||
| 94 | 1B8I|1|C+ 1B8I|1|D | DNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3'), DNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3') | STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX | X-ray diffraction | 2.4 | 1999-04-12 | ||||
| 95 | 9ANT|1|E+ 9ANT|1|F | DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3') | ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX | X-ray diffraction | 2.4 | 1998-10-14 | ||||
| 96 | 1PDN|1|A+ 1PDN|1|B | DNA (5'-D(*AP*AP*CP*GP*TP*CP*AP*CP*GP*GP*TP*TP*GP*AP*C)-3'), DNA (5'-D(*TP*TP*GP*TP*CP*AP*AP*CP*CP*GP*TP*GP*AP*CP*G)-3') | CRYSTAL STRUCTURE OF A PAIRED DOMAIN-DNA COMPLEX AT 2.5 ANGSTROMS RESOLUTION REVEALS STRUCTURAL BASIS FOR PAX DEVELOPMENTAL MUTATIONS | X-ray diffraction | 2.5 | 1995-07-31 | ||||
| 97 | 1YFJ|1|1+ 1YFJ|1|2 | 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact | X-ray diffraction | 2.69 | 2005-05-17 | ||||
| 98 | 1YFJ|1|3+ 1YFJ|1|4 | 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact | X-ray diffraction | 2.69 | 2005-05-17 | ||||
| 99 | 1YFJ|1|5+ 1YFJ|1|6 | 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact | X-ray diffraction | 2.69 | 2005-05-17 | ||||
| 100 | 1YFJ|1|7+ 1YFJ|1|8 | 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact | X-ray diffraction | 2.69 | 2005-05-17 | ||||
| 101 | 1N3C|1|B+ 1N3C|1|C | DNA complement strand, 8-oxoG-containing DNA | Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylase | X-ray diffraction | 2.7 | 2003-03-04 | ||||
| 102 | 1BVO|1|D | DNA DUPLEX | DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA | X-ray diffraction | 2.7 | 1999-07-12 | ||||
| 103 | 1BVO|1|E | DNA DUPLEX | DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA | X-ray diffraction | 2.7 | 1999-07-12 | ||||
| 104 | 2BGW|1|C+ 2BGW|1|D | 5'-D(*GP*AP*TP*CP*AP*CP*AP*GP*AP*TP *GP*CP*TP*GP*A)-3', 5'-D(*TP*CP*AP*GP*CP*AP*TP*CP*TP*GP *TP*GP*AP*TP*C)-3' | synthetic construct | XPF from Aeropyrum pernix, complex with DNA | X-ray diffraction | 2.8 | 2005-02-23 | |||
| 105 | 1OCT|1|A+ 1OCT|1|B | DNA (5'-D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)-3'), DNA (5'-D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)-3') | CRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN OCTAMER SITE: DNA RECOGNITION WITH TETHERED DNA-BINDING MODULES | X-ray diffraction | 3 | 1994-08-31 | ||||
| 106 | 2ERE|1|C+ 2ERE|1|D | 5'-D(*TP*TP*GP*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*CP*A)-3' | Crystal Structure of a Leu3 DNA-binding domain complexed with a 15mer DNA duplex | X-ray diffraction | 3 | 2006-04-04 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2NQJ|1|C+2NQJ|1|D | Crystal structure of Escherichia coli endonuclease IV (Endo IV) E261Q mutant bound to damaged DNA | X-RAY DIFFRACTION | 2.45 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 2 | 3L4J|1|E+3L4J|1|D | Topoisomerase II-DNA cleavage complex, apo | X-RAY DIFFRACTION | 2.48 | 15 | double helix,structure | enzyme,isomerase |
| 3 | 3L4K|1|E+3L4K|1|D | Topoisomerase II-DNA cleavage complex, metal-bound | X-RAY DIFFRACTION | 2.98 | 15 | double helix,structure | enzyme,isomerase |
| 4 | 3L4K|1|C+3L4K|1|B | Topoisomerase II-DNA cleavage complex, metal-bound | X-RAY DIFFRACTION | 2.98 | 15 | double helix,structure | enzyme,isomerase |
| 5 | 3L4J|1|C+3L4J|1|B | Topoisomerase II-DNA cleavage complex, apo | X-RAY DIFFRACTION | 2.48 | 15 | double helix,structure | enzyme,isomerase |
| 6 | 2NOF|1|B+2NOF|1|C | Structure of Q315F human 8-oxoguanine glycosylase proximal crosslink to 8-oxoguanine DNA | X-RAY DIFFRACTION | 2.35 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 7 | 2NOI|1|B+2NOI|1|C | Structure of G42A human 8-oxoguanine glycosylase crosslinked to undamaged G-containing DNA | X-RAY DIFFRACTION | 2.35 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 8 | 2O8D|1|E+2O8D|1|F | human MutSalpha (MSH2/MSH6) bound to ADP and a G dU mispair | X-RAY DIFFRACTION | 3 | 15 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
| 9 | 1N3C|1|B+1N3C|1|C | Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylase | X-RAY DIFFRACTION | 2.7 | 15 | double helix,structure | enzyme,hydrolase |
| 10 | 1FN7|1|C+1FN7|1|D | COUPLING OF DAMAGE RECOGNITION AND CATALYSIS BY A HUMAN BASE-EXCISION DNA REPAIR PROTEIN | X-RAY DIFFRACTION | 2.6 | 15 | double helix,structure | enzyme,hydrolase |
| 11 | 1M3H|1|B+1M3H|1|C+1M3H|1|D | Crystal Structure of Hogg1 D268E Mutant with Product Oligonucleotide | X-RAY DIFFRACTION | 2.05 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 12 | 1M3Q|1|B+1M3Q|1|C | Crystal Structure of hogg1 D268E Mutant with Base-Excised DNA and 8-aminoguanine | X-RAY DIFFRACTION | 1.9 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 13 | 1N39|1|B+1N39|1|C | Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylase | X-RAY DIFFRACTION | 2.2 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 14 | 2NOZ|1|B+2NOZ|1|C | Structure of Q315F human 8-oxoguanine glycosylase distal crosslink to 8-oxoguanine DNA | X-RAY DIFFRACTION | 2.43 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 15 | 2NOL|1|B+2NOL|1|C | Structure of catalytically inactive human 8-oxoguanine glycosylase distal crosslink to oxoG DNA | X-RAY DIFFRACTION | 2.57 | 15 | enzyme,hydrolase | |
| 16 | 1LWY|1|D+1LWY|1|E | hOgg1 Borohydride-Trapped Intermediate without 8-oxoguanine | X-RAY DIFFRACTION | 2.01 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 17 | 1LWW|1|D+1LWW|1|E | Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanine | X-RAY DIFFRACTION | 2.1 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 18 | 1HU0|1|D+1HU0|1|E | CRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED INTERMEDIATE COMPLEX | X-RAY DIFFRACTION | 2.35 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 19 | 1LWV|1|D+1LWV|1|E | Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanine | X-RAY DIFFRACTION | 2.3 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 20 | 2XHI|1|B+2XHI|1|C | Separation-of-function mutants unravel the dual reaction mode of human 8-oxoguanine DNA glycosylase | X-RAY DIFFRACTION | 1.55 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 21 | 2NOH|1|B+2NOH|1|C | Structure of catalytically inactive Q315A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNA | X-RAY DIFFRACTION | 2.01 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 22 | 2NOE|1|B+2NOE|1|C | Structure of catalytically inactive G42A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNA | X-RAY DIFFRACTION | 2.2 | 15 | double helix,structure | enzyme,hydrolase |
| 23 | 1N3A|1|B+1N3A|1|C | Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylase | X-RAY DIFFRACTION | 2.2 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 24 | 1EBM|1|C+1EBM|1|D | CRYSTAL STRUCTURE OF THE HUMAN 8-OXOGUANINE GLYCOSYLASE (HOGG1) BOUND TO A SUBSTRATE OLIGONUCLEOTIDE | X-RAY DIFFRACTION | 2.1 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 25 | 2O8B|1|E+2O8B|1|F | human MutSalpha (MSH2/MSH6) bound to ADP and a G T mispair | X-RAY DIFFRACTION | 2.75 | 15 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
| 26 | 2DDG|1|C+2DDG|1|D | Crystal structure of uracil-DNA glycosylase in complex with AP:G containing DNA | X-RAY DIFFRACTION | 2.1 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 27 | 2DP6|1|C+2DP6|1|D | Crystal structure of uracil-DNA glycosylase in complex with AP:C containing DNA | X-RAY DIFFRACTION | 1.8 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 28 | 2DEM|1|C+2DEM|1|D | Crystal structure of Uracil-DNA glycosylase in complex with AP:A containing DNA | X-RAY DIFFRACTION | 1.95 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 29 | 3KNT|1|E+3KNT|1|F | Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanine | X-RAY DIFFRACTION | 2.7 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 30 | 3KNT|1|K+3KNT|1|L | Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanine | X-RAY DIFFRACTION | 2.7 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 31 | 3KNT|1|I+3KNT|1|J | Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanine | X-RAY DIFFRACTION | 2.7 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 32 | 3KNT|1|G+3KNT|1|H | Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanine | X-RAY DIFFRACTION | 2.7 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 33 | 3CVU|1|C+3CVU|1|D | Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion | X-RAY DIFFRACTION | 2 | 15 | enzyme,lyase | |
| 34 | 3CVV|1|C+3CVV|1|D | Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion and F0 cofactor | X-RAY DIFFRACTION | 2.1 | 15 | enzyme,lyase | |
| 35 | 2WQ6|1|C+2WQ6|1|D | Structure of the 6-4 photolyase of D. melanogaster in complex with the non-natural N4-methyl T(Dewar)C lesion | X-RAY DIFFRACTION | 2.3 | 15 | enzyme,lyase | |
| 36 | 3CVY|1|C+3CVY|1|D | Drosophila melanogaster (6-4) photolyase bound to repaired ds DNA | X-RAY DIFFRACTION | 2.7 | 15 | enzyme,lyase | |
| 37 | 1O3R|1|C+1O3R|1|B | PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES | X-RAY DIFFRACTION | 3 | 15 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 38 | 1O3S|1|C+1O3S|1|B | PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES | X-RAY DIFFRACTION | 3 | 15 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 39 | 1K7A|1|B+1K7A|1|C | Ets-1(331-440)+GGAG duplex | X-RAY DIFFRACTION | 2.8 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 40 | 2VS8|1|I+2VS8|1|G+2VS8|1|H+2VS8|1|J | The crystal structure of I-DmoI in complex with DNA and Mn | X-RAY DIFFRACTION | 2.1 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 41 | 2VS8|1|D+2VS8|1|B+2VS8|1|C+2VS8|1|E | The crystal structure of I-DmoI in complex with DNA and Mn | X-RAY DIFFRACTION | 2.1 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 42 | 2VS8|1|N+2VS8|1|L+2VS8|1|M+2VS8|1|O | The crystal structure of I-DmoI in complex with DNA and Mn | X-RAY DIFFRACTION | 2.1 | 15 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 43 | 1NKB|1|C+1NKB|1|B | A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP. | X-RAY DIFFRACTION | 2 | 15 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase |
| 44 | 2H1K|1|E+2H1K|1|F | Crystal structure of the Pdx1 homeodomain in complex with DNA | X-RAY DIFFRACTION | 2.42 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 45 | 1NK9|1|C+1NK9|1|B | A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP. | X-RAY DIFFRACTION | 1.9 | 15 | double helix,feature,mispair,structure | enzyme,polymerase,transferase |
| 46 | 1K7A|1|E+1K7A|1|F | Ets-1(331-440)+GGAG duplex | X-RAY DIFFRACTION | 2.8 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 47 | 1K79|1|E+1K79|1|F | Ets-1(331-440)+GGAA duplex | X-RAY DIFFRACTION | 2.4 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 48 | 1K79|1|B+1K79|1|C | Ets-1(331-440)+GGAA duplex | X-RAY DIFFRACTION | 2.4 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 49 | 1NJW|1|C+1NJW|1|B | GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 1.9 | 15 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase |
| 50 | 1B8I|1|C+1B8I|1|D | STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX | X-RAY DIFFRACTION | 2.4 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 51 | 1P7H|1|A+1P7H|1|B+1P7H|1|C+1P7H|1|D | Structure of NFAT1 bound as a dimer to the HIV-1 LTR kB element | X-RAY DIFFRACTION | 2.6 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 52 | 1YFJ|1|7+1YFJ|1|8 | T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact | X-RAY DIFFRACTION | 2.69 | 15 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 53 | 1XC9|1|C+1XC9|1|B | Structure of a high-fidelity polymerase bound to a benzo[a]pyrene adduct that blocks replication | X-RAY DIFFRACTION | 1.9 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 54 | 1SKN|1|A+1SKN|1|B | THE BINDING DOMAIN OF SKN-1 IN COMPLEX WITH DNA: A NEW DNA-BINDING MOTIF | X-RAY DIFFRACTION | 2.5 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription |
| 55 | 1NKC|1|B+1NKC|1|C | A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP. | X-RAY DIFFRACTION | 1.8 | 15 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase |
| 56 | 1OZJ|1|C+1OZJ|1|D | Crystal structure of Smad3-MH1 bound to DNA at 2.4 A resolution | X-RAY DIFFRACTION | 2.4 | 15 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),SMAD-like,regulatory,transcription |
| 57 | 3KMP|1|C+3KMP|1|D | Crystal Structure of SMAD1-MH1/DNA complex | X-RAY DIFFRACTION | 2.7 | 15 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),SMAD-like,regulatory,transcription |
| 58 | 3BRD|1|B+3BRD|1|C | CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, P212121 | X-RAY DIFFRACTION | 2.21 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),cell signaling,immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 59 | 1TTU|1|B+1TTU|1|C | Crystal Structure of CSL bound to DNA | X-RAY DIFFRACTION | 2.85 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 60 | 3A5T|1|C+3A5T|1|D | Crystal structure of MafG-DNA complex | X-RAY DIFFRACTION | 2.8 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription |
| 61 | 1IMH|1|A+1IMH|1|B | TonEBP/DNA COMPLEX | X-RAY DIFFRACTION | 2.86 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 62 | 3BRF|1|B+3BRF|1|C | CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, C2221 | X-RAY DIFFRACTION | 2.47 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,cell signaling,immunoglobulin (Ig) fold,regulatory,transcription |
| 63 | 3IAG|1|A+3IAG|1|B | CSL (RBP-Jk) bound to HES-1 nonconsensus site | X-RAY DIFFRACTION | 2 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 64 | 3BRG|1|A+3BRG|1|B | CSL (RBP-Jk) bound to DNA | X-RAY DIFFRACTION | 2.2 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 65 | 2BGW|1|C+2BGW|1|D | XPF from Aeropyrum pernix, complex with DNA | X-RAY DIFFRACTION | 2.8 | 15 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,hydrolase,nuclease,regulatory |
| 66 | 1OCT|1|A+1OCT|1|B | CRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN OCTAMER SITE: DNA RECOGNITION WITH TETHERED DNA-BINDING MODULES | X-RAY DIFFRACTION | 3 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 67 | 2ERE|1|C+2ERE|1|D | Crystal Structure of a Leu3 DNA-binding domain complexed with a 15mer DNA duplex | X-RAY DIFFRACTION | 3 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription |
| 68 | 1YFJ|1|5+1YFJ|1|6 | T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact | X-RAY DIFFRACTION | 2.69 | 15 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 69 | 1DSZ|1|C+1DSZ|1|D | STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1 | X-RAY DIFFRACTION | 1.7 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 70 | 1OWR|1|E+1OWR|1|F | CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNA | X-RAY DIFFRACTION | 3 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 71 | 1OWR|1|G+1OWR|1|H | CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNA | X-RAY DIFFRACTION | 3 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 72 | 1OWR|1|C+1OWR|1|D | CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNA | X-RAY DIFFRACTION | 3 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 73 | 1OWR|1|A+1OWR|1|B | CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNA | X-RAY DIFFRACTION | 3 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 74 | 2IVK|1|G+2IVK|1|H | Crystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNA | X-RAY DIFFRACTION | 2.9 | 15 | double helix,structure | enzyme,hydrolase,nuclease |
| 75 | 2IVK|1|E+2IVK|1|F | Crystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNA | X-RAY DIFFRACTION | 2.9 | 15 | double helix,structure | enzyme,hydrolase,nuclease |
| 76 | 2HHQ|1|C+2HHQ|1|B | O6-methyl-guanine:T pair in the polymerase-10 basepair position | X-RAY DIFFRACTION | 1.8 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 77 | 2RDJ|1|F+2RDJ|1|E | Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms | X-RAY DIFFRACTION | 2.2 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 78 | 1NK7|1|C+1NK7|1|B | GUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 1.9 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 79 | 1U45|1|C+1U45|1|B | 8oxoguanine at the pre-insertion site of the polymerase active site | X-RAY DIFFRACTION | 2.01 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 80 | 1U49|1|C+1U49|1|B | Adenine-8oxoguanine mismatch at the polymerase active site | X-RAY DIFFRACTION | 2.15 | 15 | enzyme,polymerase,transferase | |
| 81 | 1U47|1|C+1U47|1|B | cytosine-8-Oxoguanine base pair at the polymerase active site | X-RAY DIFFRACTION | 2 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 82 | 1NK0|1|C+1NK0|1|B | ADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 1.7 | 15 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase |
| 83 | 1NK8|1|C+1NK8|1|B | A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP. | X-RAY DIFFRACTION | 1.9 | 15 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase |
| 84 | 1U48|1|C+1U48|1|B | Extension of a cytosine-8-oxoguanine base pair | X-RAY DIFFRACTION | 2.1 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 85 | 1U4B|1|C+1U4B|1|B | Extension of an adenine-8oxoguanine mismatch | X-RAY DIFFRACTION | 1.6 | 15 | enzyme,polymerase,transferase | |
| 86 | 1BVO|1|E | DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA | X-RAY DIFFRACTION | 2.7 | 15 | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription | |
| 87 | 1NK6|1|C+1NK6|1|B | CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 2.1 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 88 | 1QPI|1|N | CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEX | X-RAY DIFFRACTION | 2.5 | 15 | B-form double helix,double helix,feature,mispair,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,tetR family,transcription |
| 89 | 1QPI|1|M | CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEX | X-RAY DIFFRACTION | 2.5 | 15 | B-form double helix,double helix,feature,mispair,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,tetR family,transcription |
| 90 | 1PDN|1|A+1PDN|1|B | CRYSTAL STRUCTURE OF A PAIRED DOMAIN-DNA COMPLEX AT 2.5 ANGSTROMS RESOLUTION REVEALS STRUCTURAL BASIS FOR PAX DEVELOPMENTAL MUTATIONS | X-RAY DIFFRACTION | 2.5 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 91 | 3FDQ|1|C+3FDQ|1|D | Recognition of AT-rich DNA binding sites by the MogR Repressor | X-RAY DIFFRACTION | 1.75 | 15 | B-form double helix,double helix,structure | regulatory,transcription |
| 92 | 2H1K|1|C+2H1K|1|D | Crystal structure of the Pdx1 homeodomain in complex with DNA | X-RAY DIFFRACTION | 2.42 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 93 | 1YFJ|1|3+1YFJ|1|4 | T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact | X-RAY DIFFRACTION | 2.69 | 15 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 94 | 1YFJ|1|1+1YFJ|1|2 | T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact | X-RAY DIFFRACTION | 2.69 | 15 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 95 | 9ANT|1|C+9ANT|1|D | ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX | X-RAY DIFFRACTION | 2.4 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 96 | 9ANT|1|E+9ANT|1|F | ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX | X-RAY DIFFRACTION | 2.4 | 15 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 97 | 1RH6|1|C+1RH6|1|D | Bacteriophage Lambda Excisionase (Xis)-DNA Complex | X-RAY DIFFRACTION | 1.7 | 15 | B-form double helix,double helix,structure | enzyme,recombinase |
| 98 | 1NJX|1|C+1NJX|1|B | THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 1.65 | 15 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase |
| 99 | 2IMW|1|T+2IMW|1|S | Mechanism of Template-Independent Nucleotide Incorporation Catalyzed by a Template-Dependent DNA Polymerase | X-RAY DIFFRACTION | 2.05 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 100 | 1O3Q|1|C+1O3Q|1|B | PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES | X-RAY DIFFRACTION | 3 | 15 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 101 | 3BQ1|1|T+3BQ1|1|P | Insertion ternary complex of Dbh DNA polymerase | X-RAY DIFFRACTION | 2.7 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 102 | 3BQ2|1|T+3BQ2|1|P | Post-insertion binary complex of Dbh DNA polymerase | X-RAY DIFFRACTION | 2.7 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 103 | 3BQ0|1|T+3BQ0|1|P | Pre-insertion binary complex of Dbh DNA polymerase | X-RAY DIFFRACTION | 2.6 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 104 | 2CGP|1|C+2CGP|1|B | CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE | X-RAY DIFFRACTION | 2.2 | 15 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 105 | 1BVO|1|D | DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA | X-RAY DIFFRACTION | 2.7 | 15 | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription | |
| 106 | 3MFI|1|T+3MFI|1|P | DNA Polymerase Eta in Complex With a cis-syn Thymidine Dimer | X-RAY DIFFRACTION | 1.76 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
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