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Equivalence class DNA_20.0_10786.9 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13O1M|1|B+ 3O1M|1|C (rep)DNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(ME6)P*AP*CP*CP*GP*T)-3'), DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.752010-11-17
23MR2|1|T+ 3MR2|1|PDNA (5'-D(*T*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*TP*CP*AP*T)-3')Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm)X-ray diffraction1.832010-06-30
33O1P|1|B+ 3O1P|1|CDNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(EDA)P*AP*CP*CP*GP*T)-3'), DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.512010-11-17
43BKZ|1|B+ 3BKZ|1|CDNA (5'-D(*DTP*DAP*DGP*DGP*DTP*DAP*DAP*DCP*DAP*DTP*DCP*DGP*DT)-3'), DNA (5'-D(*DAP*DAP*DCP*DGP*DAP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3')X-ray structure of E coli AlkB crosslinked to dsDNA in the active siteX-ray diffraction1.652008-04-22
53O1T|1|C+ 3O1T|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDU)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.482010-11-17
63BIE|1|C+ 3BIE|1|BDNA (5'-D(*DAP*DAP*DCP*DGP*DGP*DTP*DTP*DTP*DTP*DAP*DCP*DCP*DT)-3'), DNA (5'-D(P*DAP*DGP*DGP*DTP*DAP*DAP*(MA7)P*DAP*DCP*DCP*DGP*DT)-3')X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KGX-ray diffraction1.682008-04-22
73I0W|1|B+ 3I0W|1|C5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*A)-3'Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoGX-ray diffraction1.732009-09-29
83I0X|1|C+ 3I0X|1|D5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*AP*TP*GP*GP*A)-3'Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing adenine opposite to 8-oxoGX-ray diffraction1.82009-09-29
91SXQ|1|C+ 1SXQ|1|E5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3'BGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-ray diffraction1.82004-06-22
101M5R|1|C+ 1M5R|1|E5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction1.82002-12-11
111SXQ|1|D+ 1SXQ|1|F5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3'BGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-ray diffraction1.82004-06-22
121M5R|1|D+ 1M5R|1|F5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction1.82002-12-11
133O1U|1|C+ 3O1U|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDV)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.542010-11-17
142HHW|1|C+ 2HHW|1|B5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-ray diffraction1.882006-12-12
152HHW|1|F+ 2HHW|1|E5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-ray diffraction1.882006-12-12
163O1O|1|B+ 3O1O|1|CDNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(MFT)P*AP*CP*CP*GP*T)-3'), DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.922010-11-17
173O1S|1|C+ 3O1S|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDQ)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.582010-11-17
183H8R|1|B+ 3H8R|1|C5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*(6MA)P*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*TP*AP*TP*AP*AP*TP*AP*CP*A)-3'synthetic constructStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-ray diffraction1.772010-03-31
193O1R|1|C+ 3O1R|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDK)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.772010-11-17
202HVI|1|C+ 2HVI|1|B5'-D(*C*AP*TP*GP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:G pair in the polymerase active site (0 position)X-ray diffraction1.982006-12-12
212HVI|1|F+ 2HVI|1|E5'-D(*C*AP*TP*GP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:G pair in the polymerase active site (0 position)X-ray diffraction1.982006-12-12
223BTX|1|B+ 3BTX|1|CDNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3')X-ray structure of human ABH2 bound to dsDNA through active site cross-linkingX-ray diffraction22008-04-22
232UYC|1|C+ 2UYC|1|D5'-D(*TP*GP*GP*AP*TP*GP*5CMP*GP*CP*TP *GP*AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3'synthetic constructHhaI DNA methyltransferase R163N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-ray diffraction22008-05-27
243OHA|1|T+ 3OHA|1|P5'-D(P*TP*(8OG)P*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3'Yeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesionX-ray diffraction22010-12-22
253L2C|1|B+ 3L2C|1|CFOXO consensus binding sequence, plus strand, FOXO consensus binding sequence, minus strandCrystal Structure of the DNA Binding Domain of FOXO4 Bound to DNAX-ray diffraction1.8682009-12-29
263O1V|1|C+ 3O1V|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDJ)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.92010-11-17
272UZ4|1|C+ 2UZ4|1|D5'-D(*TP*GP*GP*AP*TP*GP*5CMP*GP*CP*TP*GP *AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3'HhaI DNA methyltransferase R165N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-ray diffraction2.12008-06-03
283H8X|1|B+ 3H8X|1|C5'-D(*CP*TP*GP*TP*(ME6)P*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*AP*AP*TP*AP*AP*GP*AP*CP*A)-3'synthetic constructStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-ray diffraction1.952010-03-31
292ZO1|1|D+ 2ZO1|1|EDNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3'), DNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3')Mouse NP95 SRA domain DNA specific complex 2X-ray diffraction1.962008-09-09
303QZ8|1|P5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*AP*GP*G)-3'TT-4 ternary complex of Dpo4X-ray diffraction1.9992011-04-06
313H8O|1|B+ 3H8O|1|C5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*(MA7)P*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*TP*AP*TP*AP*AP*TP*AP*CP*A)-3'synthetic constructStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-ray diffraction22010-03-31
321PUY|1|A5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3'1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-ray diffraction1.52003-10-14
331PUY|1|B5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3'1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-ray diffraction1.52003-10-14
343RAX|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3')Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesionX-ray diffraction1.8912011-06-15
353RAX|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3')Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesionX-ray diffraction1.8912011-06-15
363BI3|1|B+ 3BI3|1|CDNA (5'-D(*TP*AP*GP*GP*TP*AP*AP*(MA7)P*AP*(2YR)P*CP*GP*T)-3'), DNA (5'-D(*DAP*DAP*DCP*DGP*DGP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3')X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactorsX-ray diffraction1.92008-04-22
371OE5|1|F+ 1OE5|1|E5'-D(*CP*3DRP*GP*GP*AP*CP*TP*3DRP*AP*CP*GP*GP*GP)-3', 5'-D(*CP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*G)-3'Xenopus SMUG1, an anti-mutator uracil-DNA GlycosylaseX-ray diffraction2.32003-07-11
383E6C|1|A+ 3E6C|1|BDNA (5'-D(P*DGP*DGP*DCP*DAP*DTP*DGP*DTP*DTP*DAP*DAP*DTP*DGP*DC)-3'), DNA (5'-D(P*DGP*DCP*DAP*DTP*DTP*DAP*DAP*DCP*DAP*DTP*DGP*DCP*DC)-3')CprK OCPA DNA ComplexX-ray diffraction1.82008-09-30
394BDP|1|T+ 4BDP|1|PDNA (5'-D(*TP*AP*TP*TP*GP*CP*AP*TP*GP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*CP*AP*TP*GP*CP*AP*A)-3')CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUESX-ray diffraction1.81999-01-13
401YO5|1|A+ 1YO5|1|BEnhancer site of Prostate Specific Antigen Promoter RegionAnalysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory siteX-ray diffraction22005-05-17
412IRF|1|D+ 2IRF|1|CDNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3')CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-ray diffraction2.21999-10-08
422IRF|1|E+ 2IRF|1|BDNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3')CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-ray diffraction2.21999-10-08
432IRF|1|F+ 2IRF|1|ADNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3')CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-ray diffraction2.21999-10-08
441Y8Z|1|C+ 1Y8Z|1|D5'-D(*GP*AP*TP*AP*CP*TP*(5HU)P*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*G)-3'alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a HMU base at 1.9 A resolutionX-ray diffraction1.92005-08-30
453EYZ|1|C+ 3EYZ|1|B5'-D(*DAP*DTP*DGP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DGP*DA)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DGP*DC)-3'Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form)X-ray diffraction2.12009-11-10
462OXV|1|CDNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')Structure of the A138T promiscuous mutant of the EcoRI restriction endonuclease bound to its cognate recognition site.X-ray diffraction1.952007-10-23
471GD2|1|A+ 1GD2|1|BDNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3')CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-ray diffraction22000-10-02
481GD2|1|C+ 1GD2|1|DDNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3')CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-ray diffraction22000-10-02
492ZO0|1|D+ 2ZO0|1|EDNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3'), DNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3')mouse NP95 SRA domain DNA specific complex 1X-ray diffraction2.192008-09-09
503RAQ|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3')Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesionX-ray diffraction2.252011-06-15
513RAQ|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3')Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesionX-ray diffraction2.252011-06-15
522HHX|1|C+ 2HHX|1|B5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*G)-3'O6-methyl-guanine in the polymerase template preinsertion siteX-ray diffraction2.262006-12-12
531WTE|1|X+ 1WTE|1|Y5'-D(*AP*CP*CP*GP*GP*GP*CP*CP*CP*TP*GP*CP*C)-3', 5'-D(*GP*GP*CP*AP*GP*GP*GP*CP*CP*CP*GP*GP*T)-3'Crystal structure of type II restrcition endonuclease, EcoO109I complexed with cognate DNAX-ray diffraction1.92004-12-14
541J1V|1|B+ 1J1V|1|C5'-D(*TP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'Crystal structure of DnaA domainIV complexed with DnaAbox DNAX-ray diffraction2.12003-04-22
553PVP|1|CDNA (5'-D(*CP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*AP*C)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-ray diffraction2.32011-05-25
563PVP|1|DDNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*G)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-ray diffraction2.32011-05-25
573PVP|1|EDNA (5'-D(*CP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*AP*C)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-ray diffraction2.32011-05-25
583PVP|1|FDNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*G)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-ray diffraction2.32011-05-25
593QZ7|1|P5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*GP*GP*G)-3'T-3 ternary complex of Dpo4X-ray diffraction1.9982011-04-06
603GV5|1|F+ 3GV5|1|E5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3'Human DNA polymerase iota in complex with T template DNA and incoming ddADPX-ray diffraction22009-06-02
613GV5|1|T+ 3GV5|1|P5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3'Human DNA polymerase iota in complex with T template DNA and incoming ddADPX-ray diffraction22009-06-02
623A46|1|C+ 3A46|1|DDNACrystal structure of MvNei1/THF complexX-ray diffraction2.22009-07-21
633A46|1|E+ 3A46|1|FDNACrystal structure of MvNei1/THF complexX-ray diffraction2.22009-07-21
643G0R|1|G+ 3G0R|1|K5'-D(*GP*CP*TP*GP*CP*GP*CP*AP*GP*GP*GP*CP*G)-3', 5'-D(*CP*CP*CP*TP*GP*UP*GP*CP*AP*GP*C)-3'Complex of Mth0212 and an 8bp dsDNA with distorted endsX-ray diffraction2.42010-03-09
653BTY|1|B+ 3BTY|1|CDNA (5'-D(*DCP*DTP*DGP*DTP*DAP*DTP*(MA7)P*DAP*DCP*DTP*DGP*DCP*DG)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DGP*DTP*DTP*DAP*DTP*DAP*DCP*DA)-3')Crystal structure of human ABH2 bound to dsDNA containing 1meA through cross-linking away from active siteX-ray diffraction2.352008-04-22
663PR5|1|PDNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3')Dpo4 Y12A mutant incorporating ADP opposite template dTX-ray diffraction2.42011-02-23
671PP7|1|E+ 1PP7|1|FFERREDOXIN INRCrystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin InrX-ray diffraction2.452003-11-18
683OS0|1|tDNA (5'-D(*CP*CP*CP*GP*AP*G*GP*CP*AP*CP*GP*TP*G)-3')PFV strand transfer complex (STC) at 2.81 A resolutionX-ray diffraction2.812010-11-17
691U8B|1|E+ 1U8B|1|D5'-D(*AP*AP*TP*CP*TP*TP*GP*CP*GP*CP*TP*TP*T)-3', 5'-D(P*AP*AP*AP*GP*CP*GP*CP*AP*AP*GP*AP*T)-3'Crystal structure of the methylated N-ADA/DNA complexX-ray diffraction2.12005-10-11
701YQM|1|B+ 1YQM|1|C5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(7GU)P*GP*TP*CP*TP*AP*C)-3'Catalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNAX-ray diffraction2.52005-04-05
713RBD|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3')Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.5022011-06-15
723RBD|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3')Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.5022011-06-15
733QE9|1|ADNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3')Crystal structure of human exonuclease 1 Exo1 (D173A) in complex with DNA (complex I)X-ray diffraction2.512011-04-20
743QE9|1|CDNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3')Crystal structure of human exonuclease 1 Exo1 (D173A) in complex with DNA (complex I)X-ray diffraction2.512011-04-20
753PVV|1|EDNA (5'-D(*CP*GP*TP*TP*GP*TP*CP*CP*AP*CP*AP*AP*C)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-ray diffraction22011-05-25
763PVV|1|DDNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*CP*AP*AP*CP*G)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-ray diffraction22011-05-25
773PVV|1|FDNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*CP*AP*AP*CP*G)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-ray diffraction22011-05-25
783PVV|1|CDNA (5'-D(*CP*GP*TP*TP*GP*TP*CP*CP*AP*CP*AP*AP*C)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-ray diffraction22011-05-25
793PO5|1|CDNA (5'-D(P*(3DR)P*TP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3')Structure of a mutant of the large fragment of DNA polymerase I from Thermus Auqaticus in complex with an abasic site and ddATPX-ray diffraction2.392011-06-15
801Y6F|1|C+ 1Y6F|1|D5'-D(*GP*AP*TP*AP*CP*TP*(3DR)P*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic siteX-ray diffraction2.42005-08-30
811YQL|1|B+ 1YQL|1|C5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(PPW)P*GP*TP*CP*TP*AP*C)-3'Catalytically inactive hOGG1 crosslinked with 7-deaza-8-azaguanine containing DNAX-ray diffraction2.62005-04-05
822UYH|1|C+ 2UYH|1|D5'-D(*TP*GP*GP*AP*TP*G*5CMP*GP*CP*TP*GP *AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3'HhaI DNA methyltransferase S87Q-Q237S mutant complex with 13mer GCGC- GMGC oligonucleotide and SAHX-ray diffraction2.632008-05-27
833BTZ|1|B+ 3BTZ|1|CDNA (5'-D(*AP*GP*GP*TP*GP*AP*(2YR)P*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DTP*DTP*DAP*DTP*DCP*DAP*DCP*DC)-3')Crystal structure of human ABH2 cross-linked to dsDNAX-ray diffraction32008-04-22
843GFI|1|D+ 3GFI|1|E5'-D(*TP*AP*AP*CP*AP*AP*TP*AP*GP*CP*AP*AP*A)-3', 5'-D(*TP*TP*GP*CP*TP*AP*TP*TP*GP*T)-3'Crystal structure of ST1710 complexed with its promoter DNAX-ray diffraction2.12009-08-25
853PR4|1|PDNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3')Dpo4 Y12A mutant incorporating dADP opposite template dTX-ray diffraction2.652011-02-23
862FCC|1|C+ 2FCC|1|DDNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3')Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-ray diffraction2.32006-10-03
872FCC|1|E+ 2FCC|1|FDNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3')Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-ray diffraction2.32006-10-03
882HVH|1|C+ 2HVH|1|B5'-D(*CP*A*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:O6MeG pair in the polymerase active site (0 position)X-ray diffraction2.4922006-12-12
892HVH|1|F+ 2HVH|1|E5'-D(*CP*A*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:O6MeG pair in the polymerase active site (0 position)X-ray diffraction2.4922006-12-12
903BU0|1|B+ 3BU0|1|CDNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3')crystal structure of human ABH2 cross-linked to dsDNA with cofactorsX-ray diffraction2.52008-04-22
911SXP|1|C+ 1SXP|1|D5'-D(*A*AP*TP*AP*CP*TP*AP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*T)-3'BGT in complex with a 13mer DNA containing a central A:G mismatchX-ray diffraction2.52004-06-22
923RB6|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3')Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.72011-06-15
933RB6|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3')Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.72011-06-15
941KFV|1|D+ 1KFV|1|E5'-D(*CP*TP*CP*TP*TP*TP*(PDI)P*TP*TP*TP*CP*TP*C)-3', 5'-D(*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*AP*G)-3'Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA.X-ray diffraction2.552002-06-14
951KFV|1|G+ 1KFV|1|H5'-D(*CP*TP*CP*TP*TP*TP*(PDI)P*TP*TP*TP*CP*TP*C)-3', 5'-D(*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*AP*G)-3'Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA.X-ray diffraction2.552002-06-14
963RB3|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3')Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 1-methylguanine (m1g) lesionX-ray diffraction2.82011-06-15
971IXY|1|C+ 1IXY|1|E5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction2.52002-12-04
981IXY|1|D+ 1IXY|1|F5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction2.52002-12-04
992UZK|1|B+ 2UZK|1|E5'-D(*CP*TP*AP*TP*GP*TP*AP*AP*AP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*TP*TP*TP*AP*CP*AP*TP*AP*G)-3'Homo sapiensCrystal structure of the human FOXO3a-DBD bound to DNAX-ray diffraction2.72008-05-13
1002UZK|1|D+ 2UZK|1|F5'-D(*CP*TP*AP*TP*GP*TP*AP*AP*AP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*TP*TP*TP*AP*CP*AP*TP*AP*G)-3'Homo sapiensCrystal structure of the human FOXO3a-DBD bound to DNAX-ray diffraction2.72008-05-13
1013QI5|1|CDNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDC)P*TP*TP*GP*CP*CP*T)-3')Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-ray diffraction2.22011-03-09
1023QI5|1|DDNA (5'-D(*GP*GP*CP*AP*AP*GP*CP*AP*TP*GP*TP*CP*A)-3')Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-ray diffraction2.22011-03-09
1033QI5|1|EDNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDC)P*TP*TP*GP*CP*CP*T)-3')Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-ray diffraction2.22011-03-09
1043QI5|1|FDNA (5'-D(*GP*GP*CP*AP*AP*GP*CP*AP*TP*GP*TP*CP*A)-3')Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-ray diffraction2.22011-03-09
1053BUC|1|B+ 3BUC|1|CDNA (5'-D(*DCP*DTP*DGP*DTP*DAP*DTP*(MA7)P*DAP*DCP*DTP*DGP*DCP*DG)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DGP*DTP*DTP*DAP*DTP*DAP*DCP*DA)-3')X-ray structure of human ABH2 bound to dsDNA with Mn(II) and 2KGX-ray diffraction2.592008-04-22
1063RBE|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3')Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.82011-06-15
1073RBE|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3')Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.82011-06-15
1083RB4|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DDG))-3')Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.8052011-06-15
1093RB4|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DDG))-3')Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesionX-ray diffraction2.8052011-06-15
1103QEB|1|ADNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3')Crystal structure of human exonuclease 1 Exo1 (WT) in complex with DNA and Mn2+ (complex III)X-ray diffraction32011-04-20
1113QEA|1|ADNA (5'-D(P*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3')Crystal structure of human exonuclease 1 Exo1 (WT) in complex with DNA (complex II)X-ray diffraction3.12011-04-20
1121Y6G|1|C+ 1Y6G|1|D5'-D(*GP*AP*TP*AP*CP*TP*(5HU)P*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*T)-3'alpha-glucosyltransferase in complex with UDP and a 13_mer DNA containing a HMU base at 2.8 A resolutionX-ray diffraction2.82005-08-30
1131CS7|1|A5'-D(GP*(BRU)P*TP*TP*TP*GP*(S02)*CP*AP*AP*AP*AP*C)-3'SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKERX-ray diffraction3.22001-10-19
1141CS7|1|B5'-D(GP*(BRU)P*TP*TP*TP*GP*(S02)*CP*AP*AP*AP*AP*C)-3'SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKERX-ray diffraction3.22001-10-19
1151CS7|1|C5'-D(GP*(BRU)P*TP*TP*TP*GP*(S02)*CP*AP*AP*AP*AP*C)-3'SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKERX-ray diffraction3.22001-10-19
1161CS7|1|D5'-D(GP*(BRU)P*TP*TP*TP*GP*(S02)*CP*AP*AP*AP*AP*C)-3'SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKERX-ray diffraction3.22001-10-19
1173KOV|1|C+ 3KOV|1|DDNA (5'-D(*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*T)-3')Structure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factorsX-ray diffraction2.92010-02-16
1183KOV|1|K+ 3KOV|1|LDNA (5'-D(*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*T)-3')Structure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factorsX-ray diffraction2.92010-02-16
1193GX4|1|Y+ 3GX4|1|ZDNA (5'-D(*GP*CP*CP*AP*TP*GP*(6OG)P*CP*TP*AP*GP*TP*A)-3'), DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3')Crystal Structure Analysis of S. Pombe ATL in complex with DNAX-ray diffraction2.72009-06-09
1203GYH|1|Y+ 3GYH|1|ZDNA (5'-D(*GP*CP*CP*AP*TP*GP*GP*CP*TP*AP*GP*TP*A)-3'), DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3')Crystal Structure Analysis of S. Pombe ATL in complex with damaged DNA containing POBX-ray diffraction2.82009-06-16
1211T38|1|B+ 1T38|1|C5'-D(*GP*CP*CP*AP*TP*GP*(6OG)P*CP*TP*AP*GP*TP*A)-3', 5'-D(*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*GP*C)-3'HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE BOUND TO DNA CONTAINING O6-METHYLGUANINEX-ray diffraction3.22004-07-13
1223RB0|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DDG))-3')Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 1-methylguanine (M1G) lesionX-ray diffraction3.2252011-06-15
1233RB0|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DDG))-3')Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 1-methylguanine (M1G) lesionX-ray diffraction3.2252011-06-15
1241T39|1|C+ 1T39|1|D5'-D(*GP*CP*CP*AP*TP*GP*(E1X)P*CP*TP*AP*GP*TP*A)-3', 5'-D(*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*GP*C)-3'HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE COVALENTLY CROSSLINKED TO DNAX-ray diffraction3.32004-07-13
1251T39|1|E+ 1T39|1|F5'-D(*GP*CP*CP*AP*TP*GP*(E1X)P*CP*TP*AP*GP*TP*A)-3', 5'-D(*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*GP*C)-3'HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE COVALENTLY CROSSLINKED TO DNAX-ray diffraction3.32004-07-13
1261K3X|1|B+ 1K3X|1|C5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNAX-ray diffraction1.252002-10-04
1271K3W|1|B+ 1K3W|1|C5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNAX-ray diffraction1.422002-10-04
1281LLM|1|A+ 1LLM|1|B5'-D(*TP*CP*CP*CP*AP*CP*GP*CP*GP*TP*GP*GP*G)-3'Crystal Structure of a Zif23-GCN4 Chimera Bound to DNAX-ray diffraction1.52003-09-30
1291QUM|1|D+ 1QUM|1|C+ 1QUM|1|B5'-D(*CP*GP*TP*CP*C)-3', 5'-D(*(3DR)P*CP*GP*AP*CP*GP*A)-3', 5'-D(*TP*CP*GP*TP*CP*GP*GP*GP*GP*AP*CP*G)-3'CRYSTAL STRUCTURE OF ESCHERICHIA COLI ENDONUCLEASE IV IN COMPLEX WITH DAMAGED DNAX-ray diffraction1.551999-08-31
1303PVI|1|C+ 3PVI|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3')D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSISX-ray diffraction1.591998-10-14
1311DC1|1|C+ 1DC1|1|WDNA (5'-D(*T*AP*TP*AP*CP*TP*CP*GP*AP*GP*TP*AP*T)-3')RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLDX-ray diffraction1.72001-02-21
1322PVI|1|C+ 2PVI|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*(C38)P*TP*GP*GP*TP*C)-3')PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNAX-ray diffraction1.761999-12-20
1331EYU|1|C+ 1EYU|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3')HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6X-ray diffraction1.782000-07-21
1341CL8|1|BDNA (5'-D(*TP*CP*GP*CP*GP*AP*(PRN)P*TP*TP*CP*GP*CP*G)-3')A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P)X-ray diffraction1.81999-05-19
1351A73|1|C+ 1A73|1|E+ 1A73|1|D+ 1A73|1|FDNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3')INTRON-ENCODED ENDONUCLEASE I-PPOI COMPLEXED WITH DNAX-ray diffraction1.81998-10-14
1361CKQ|1|BDNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEXX-ray diffraction1.851999-04-26
1372C7Q|1|C+ 2C7Q|1|D5'-D(*T*GP*GP*(2PR)*GP*GP*(5CM)*GP*CP*TP*GP* AP*C)-3', 5'-D(*T*GP*TP*CP*AP*GP*CP*GP*CP*CP*GP*CP*C)-3'synthetic constructHhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine outside the recognition sequence (paired with G) and SAHX-ray diffraction1.852005-12-14
1382C7O|1|C+ 2C7O|1|D5'-D(*T*GP*GP*AP*TP*GP*(5CM)*GP*CP*TP*GP*AP *C)-3', 5'-D(*T*GP*TP*CP*AP*(2PR)*CP*GP*CP*AP*TP*CP *C)-3'synthetic constructHhaI DNA methyltransferase complex with 13mer oligonucleotide containing 2-aminopurine adjacent to the target base (PCGC:GMGC) and SAHX-ray diffraction1.92005-12-14
1392HR1|1|D+ 2HR1|1|C5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcyX-ray diffraction1.962006-09-19
1401DUX|1|A+ 1DUX|1|BDNA (5'-D(*TP*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*T)-3'), DNA (5'-D(*AP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*A)-3')ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-ray diffraction2.12000-04-17
1411DUX|1|D+ 1DUX|1|EDNA (5'-D(*TP*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*T)-3'), DNA (5'-D(*AP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*A)-3')ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-ray diffraction2.12000-04-17
1421K82|1|E+ 1K82|1|I5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.12002-06-14
1431K82|1|F+ 1K82|1|J5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.12002-06-14
1441K82|1|G+ 1K82|1|K5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.12002-06-14
1451K82|1|H+ 1K82|1|L5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.12002-06-14
1461MEY|1|A+ 1MEY|1|B+ 1MEY|1|D+ 1MEY|1|EDNA (5'-D(*AP*TP*GP*AP*GP*GP*CP*AP*GP*AP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*CP*TP*GP*CP*CP*TP*(C38)P*A)-3')CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNAX-ray diffraction2.21997-03-12
1471SKM|1|C+ 1SKM|1|D5'-D(*TP*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3', 5'-D(*T*GP*TP*CP*AP*GP*(HCX)P*GP*CP*AP*TP*GP*G)-3'HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target siteX-ray diffraction2.22004-08-24
1481T7P|1|T+ 1T7P|1|PDNA (5'-D(P*CP*CP*TP*TP*GP*GP*CP*AP*CP*TP*GP*GP*C)-3'), DNA (5'-D(P*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*2DA)-3')T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXINX-ray diffraction2.21998-02-25
1491FJX|1|C+ 1FJX|1|DDNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3')STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCYX-ray diffraction2.262000-12-15
1501YF3|1|C+ 1YF3|1|D5'-D(*AP*CP*CP*AP*TP*GP*AP*TP*CP*TP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*AP*GP*AP*TP*CP*AP*TP*GP*G)-3'T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) ContactX-ray diffraction2.292005-05-17
1513KTU|1|B+ 3KTU|1|CDNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*AP*(FDG)P*GP*TP*CP*TP*AP*C)-3')synthetic constructStructure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNAX-ray diffraction2.32010-07-14
1522KTQ|1|D+ 2KTQ|1|BDNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3')OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUSX-ray diffraction2.31999-01-13
1531F4R|1|D+ 1F4R|1|EDNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDA)P*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNAX-ray diffraction2.42000-12-11
1541F6O|1|D+ 1F6O|1|EDNA (5'-D(*GP*AP*CP*AP*TP*GP*(YRR)P*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNAX-ray diffraction2.42000-12-11
1551ERI|1|BDNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGEX-ray diffraction2.51995-02-07
1564KTQ|1|C+ 4KTQ|1|BDNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3')BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNAX-ray diffraction2.51999-01-13
1571DIZ|1|C+ 1DIZ|1|DDNA (5'-D(*GP*AP*CP*AP*TP*GP*AP*(NRI)P*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')Escherichia coliCRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-ray diffraction2.52000-03-20
1583E54|1|C+ 3E54|1|E+ 3E54|1|D+ 3E54|1|FDNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(*DTP*DTP*DGP*DGP*DCP*DTP*DAP*DCP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(P*DGP*DGP*DTP*DAP*DGP*DCP*DCP*DAP*DA)-3'), DNA (5'-D(P*DGP*DAP*DGP*DAP*DGP*DTP*DCP*DAP*DG)-3')Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNAX-ray diffraction2.52008-12-30
1591F0O|1|C+ 1F0O|1|D(5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C-3')PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITEX-ray diffraction2.52000-11-06
1601DIZ|1|E+ 1DIZ|1|FDNA (5'-D(*GP*AP*CP*AP*TP*GP*AP*(NRI)P*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')Escherichia coliCRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-ray diffraction2.52000-03-20
1611QRH|1|M5'-(TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G*)-3'X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 AX-ray diffraction2.51999-06-23
1621D31|1|A+ 1D31|1|BDNA (5'-D(*CP*GP*CP*AP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')THE THREE-DIMENSIONAL STRUCTURES OF BULGE-CONTAINING DNA FRAGMENTSX-ray diffraction2.61992-04-15
1632OQ4|1|C+ 2OQ4|1|D5'-D(*G*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3', 5'-D(*C*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrateX-ray diffraction2.62008-02-26
1641MHT|1|C+ 1MHT|1|BDNA (5'-D(*TP*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(P*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3')COVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S-ADENOSYL-L-HOMOCYSTEINEX-ray diffraction2.61995-06-03
1651PVI|1|C+ 1PVI|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3')STRUCTURE OF PVUII ENDONUCLEASE WITH COGNATE DNAX-ray diffraction2.61995-02-14
1662OQ4|1|E+ 2OQ4|1|F5'-D(*G*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3', 5'-D(*C*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrateX-ray diffraction2.62008-02-26
1671QRI|1|M5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN E144D MUTATION AT 2.7 AX-ray diffraction2.61999-06-23
1682I9K|1|C+ 2I9K|1|D5'-D(*T*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'Engineered Extrahelical Base Destabilization Enhances Sequence Discrimination of DNA Methyltransferase M.HhaIX-ray diffraction2.652006-10-10
1693MHT|1|D+ 3MHT|1|CDNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3')TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH UNMODIFIED DNA AND ADOHCYX-ray diffraction2.71997-01-27
1704MHT|1|D+ 4MHT|1|CDNA (5'-D(*TP*GP*AP*TP*AP*GP*(5CM)P*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(*GP*AP*TP*AP*GP*(5CM)P*GP*CP*TP*AP*TP*C)-3')TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH NATIVE DNA AND ADOHCYX-ray diffraction2.71997-01-27
1711BNK|1|D+ 1BNK|1|EDNA (5'-D(*GP*AP*CP*AP*TP*GP*YRRP*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')HUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNAX-ray diffraction2.71998-10-21
1722Z6U|1|D+ 2Z6U|1|CDNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3')Ternary structure of the Glu119Ala M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcyX-ray diffraction2.722007-11-20
1731VAS|1|B+ 1VAS|1|CDNA (5'-D(*AP*TP*CP*GP*CP*GP*TP*TP*GP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*CP*AP*AP*CP*GP*CP*GP*A)-3')ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITIONX-ray diffraction2.751996-01-31
1742ZCJ|1|D+ 2ZCJ|1|CDNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3')Ternary structure of the Glu119Gln M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcyX-ray diffraction2.752007-12-04
1752PIS|1|A+ 2PIS|1|BDNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3')Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-ray diffraction2.82007-10-30
1762PIS|1|E+ 2PIS|1|FDNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3')Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-ray diffraction2.82007-10-30
1772PIS|1|G+ 2PIS|1|HDNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3')Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-ray diffraction2.82007-10-30
1782PIS|1|I+ 2PIS|1|JDNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3')Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-ray diffraction2.82007-10-30
1791ODH|1|C+ 1ODH|1|D5'-D(*CP*GP*AP*TP*GP*CP*GP*GP*GP*TP *GP*CP*A)-3', 5'-D(*TP*GP*CP*AP*CP*CP*CP*GP*CP*AP *TP*CP*G)-3'Structure of the GCM domain bound to DNAX-ray diffraction2.852003-04-08
1802Z6A|1|D+ 2Z6A|1|CDNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3')synthetic constructS-Adenosyl-L-methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates during DNA Cytosine MethylationX-ray diffraction2.882007-08-21
1811ZJG|1|A+ 1ZJG|1|B5'-D(*AP*TP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*T)-3', 5'-D(*TP*AP*GP*CP*CP*CP*CP*GP*CP*CP*CP*CP*A)-3'13mer-coX-ray diffraction32005-05-10
1821C7Y|1|B+ 1C7Y|1|D+ 1C7Y|1|F+ 1C7Y|1|H+ 1C7Y|1|C+ 1C7Y|1|E+ 1C7Y|1|G+ 1C7Y|1|IDNA (5'-D(P*DAP*DAP*DGP*DTP*DTP*DGP*DGP*DGP*DAP*DTP*DTP*DGP*DT)-3'), DNA (5'-D(P*DCP*DTP*DGP*DTP*DGP*DTP*DGP*DTP*DAP*DAP*DGP*DC)-3'), DNA (5'-D(P*DGP*DCP*DTP*DTP*DAP*DCP*DAP*DCP*DAP*DCP*DAP*DGP*DA)-3'), DNA (5'-D(P*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DTP*DGP*DAP*DA)-3'), DNA (5'-D(P*DTP*DTP*DCP*DAP*DCP*DCP*DCP*DTP*DAP*DAP*DCP*DCP*DA)-3'), DNA (5'-D(P*DGP*DAP*DCP*DAP*DCP*DAP*DCP*DAP*DTP*DTP*DCP*DG)-3'), DNA (5'-D(P*DCP*DGP*DAP*DAP*DTP*DGP*DTP*DGP*DTP*DGP*DTP*DCP*DT)-3'), DNA (5'-D(P*DCP*DAP*DAP*DTP*DCP*DCP*DCP*DAP*DAP*DCP*DTP*DT)-3')E.COLI RUVA-HOLLIDAY JUNCTION COMPLEXX-ray diffraction3.12000-07-21
1832GXA|1|M5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'Crystal structure of papillomavirus E1 hexameric helicase with ssDNA and MgADPX-ray diffraction3.152006-07-25
1842GXA|1|N5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'Crystal structure of papillomavirus E1 hexameric helicase with ssDNA and MgADPX-ray diffraction3.152006-07-25

Release history

Release0.22
Date2011-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
1
3H8O|1|B+3H8O|1|C		Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-RAY DIFFRACTION213enzyme,oxidoreductase
2
3H8R|1|B+3H8R|1|C		Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-RAY DIFFRACTION1.7713enzyme,oxidoreductase
3
3BTX|1|B+3BTX|1|C		X-ray structure of human ABH2 bound to dsDNA through active site cross-linkingX-RAY DIFFRACTION213enzyme,oxidoreductase
4
3BU0|1|B+3BU0|1|C		crystal structure of human ABH2 cross-linked to dsDNA with cofactorsX-RAY DIFFRACTION2.513enzyme,oxidoreductase
5
3BUC|1|B+3BUC|1|C		X-ray structure of human ABH2 bound to dsDNA with Mn(II) and 2KGX-RAY DIFFRACTION2.5913enzyme,oxidoreductase
6
3BTY|1|B+3BTY|1|C		Crystal structure of human ABH2 bound to dsDNA containing 1meA through cross-linking away from active siteX-RAY DIFFRACTION2.3513enzyme,oxidoreductase
7
2HVI|1|C+2HVI|1|B		ddCTP:G pair in the polymerase active site (0 position)X-RAY DIFFRACTION1.9813B-form double helix,double helix,structureenzyme,polymerase,transferase
8
2HVI|1|F+2HVI|1|E		ddCTP:G pair in the polymerase active site (0 position)X-RAY DIFFRACTION1.9813B-form double helix,double helix,structureenzyme,polymerase,transferase
9
2HHW|1|C+2HHW|1|B		ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-RAY DIFFRACTION1.8813double helix,structureenzyme,polymerase,transferase
10
2HHW|1|F+2HHW|1|E		ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-RAY DIFFRACTION1.8813double helix,structureenzyme,polymerase,transferase
11
2HVH|1|F+2HVH|1|E		ddCTP:O6MeG pair in the polymerase active site (0 position)X-RAY DIFFRACTION2.49213B-form double helix,double helix,structureenzyme,polymerase,transferase
12
2HVH|1|C+2HVH|1|B		ddCTP:O6MeG pair in the polymerase active site (0 position)X-RAY DIFFRACTION2.49213B-form double helix,double helix,structureenzyme,polymerase,transferase
13
2HHX|1|C+2HHX|1|B		O6-methyl-guanine in the polymerase template preinsertion siteX-RAY DIFFRACTION2.2613B-form double helix,double helix,structureenzyme,polymerase,transferase
14
1VAS|1|B+1VAS|1|C		ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITIONX-RAY DIFFRACTION2.7513enzyme,hydrolase,nuclease
15
2FCC|1|E+2FCC|1|F		Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-RAY DIFFRACTION2.313double helix,structureenzyme,hydrolase,nuclease
16
2FCC|1|C+2FCC|1|D		Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-RAY DIFFRACTION2.313double helix,structureenzyme,hydrolase,nuclease
17
3BIE|1|C+3BIE|1|B		X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KGX-RAY DIFFRACTION1.6813enzyme,oxidoreductase
18
3O1V|1|C+3O1V|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.913enzyme,oxidoreductase
19
3O1T|1|C+3O1T|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.4813enzyme,oxidoreductase
20
3O1U|1|C+3O1U|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.5413enzyme,oxidoreductase
21
3O1R|1|C+3O1R|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.7713enzyme,oxidoreductase
22
3O1S|1|C+3O1S|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.5813enzyme,oxidoreductase
23
3BI3|1|B+3BI3|1|C		X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactorsX-RAY DIFFRACTION1.913enzyme,oxidoreductase
24
3O1P|1|B+3O1P|1|C		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.5113enzyme,oxidoreductase
25
3O1M|1|B+3O1M|1|C		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.7513enzyme,oxidoreductase
26
3O1O|1|B+3O1O|1|C		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.9213enzyme,oxidoreductase
27
3H8X|1|B+3H8X|1|C		Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-RAY DIFFRACTION1.9513enzyme,oxidoreductase
28
3BKZ|1|B+3BKZ|1|C		X-ray structure of E coli AlkB crosslinked to dsDNA in the active siteX-RAY DIFFRACTION1.6513B-form double helix,double helix,feature,mispair,structureenzyme,oxidoreductase
29
1Y8Z|1|C+1Y8Z|1|D		alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a HMU base at 1.9 A resolutionX-RAY DIFFRACTION1.913enzyme,transferase
30
3OS0|1|t		PFV strand transfer complex (STC) at 2.81 A resolutionX-RAY DIFFRACTION2.8113enzyme,recombinase
31
1ZJG|1|A+1ZJG|1|B		13mer-coX-RAY DIFFRACTION313A-form double helix,double helix,structure
32
3GV5|1|F+3GV5|1|E		Human DNA polymerase iota in complex with T template DNA and incoming ddADPX-RAY DIFFRACTION213enzyme,polymerase,transferase
33
3GV5|1|T+3GV5|1|P		Human DNA polymerase iota in complex with T template DNA and incoming ddADPX-RAY DIFFRACTION213enzyme,polymerase,transferase
34
3I0X|1|C+3I0X|1|D		Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing adenine opposite to 8-oxoGX-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,hydrolase
35
3I0W|1|B+3I0W|1|C		Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoGX-RAY DIFFRACTION1.7313B-form double helix,double helix,structureenzyme,hydrolase
36
3A46|1|C+3A46|1|D		Crystal structure of MvNei1/THF complexX-RAY DIFFRACTION2.213double helix,structureenzyme,hydrolase
37
3A46|1|E+3A46|1|F		Crystal structure of MvNei1/THF complexX-RAY DIFFRACTION2.213double helix,structureenzyme,hydrolase
38
1K82|1|H+1K82|1|L		Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,hydrolase
39
1K82|1|G+1K82|1|K		Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,hydrolase
40
1K82|1|F+1K82|1|J		Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,hydrolase
41
1K82|1|E+1K82|1|I		Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,hydrolase
42
1DIZ|1|E+1DIZ|1|F		CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase
43
1DIZ|1|C+1DIZ|1|D		CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase
44
1QUM|1|D+1QUM|1|C+1QUM|1|B		CRYSTAL STRUCTURE OF ESCHERICHIA COLI ENDONUCLEASE IV IN COMPLEX WITH DAMAGED DNAX-RAY DIFFRACTION1.5513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
45
2OQ4|1|C+2OQ4|1|D		Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrateX-RAY DIFFRACTION2.613double helix,structureenzyme,hydrolase,nuclease
46
1K3W|1|B+1K3W|1|C		Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNAX-RAY DIFFRACTION1.4213B-form double helix,double helix,structureenzyme,hydrolase,nuclease
47
1K3X|1|B+1K3X|1|C		Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNAX-RAY DIFFRACTION1.2513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
48
2OQ4|1|E+2OQ4|1|F		Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrateX-RAY DIFFRACTION2.613double helix,structureenzyme,hydrolase,nuclease
49
1KFV|1|D+1KFV|1|E		Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA.X-RAY DIFFRACTION2.5513B-form double helix,double helix,structureenzyme,hydrolase
50
1KFV|1|G+1KFV|1|H		Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA.X-RAY DIFFRACTION2.5513B-form double helix,double helix,structureenzyme,hydrolase
51
1YQL|1|B+1YQL|1|C		Catalytically inactive hOGG1 crosslinked with 7-deaza-8-azaguanine containing DNAX-RAY DIFFRACTION2.613B-form double helix,double helix,structureenzyme,hydrolase
52
1YQM|1|B+1YQM|1|C		Catalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNAX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase
53
3KTU|1|B+3KTU|1|C		Structure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNAX-RAY DIFFRACTION2.313B-form double helix,double helix,structureenzyme,hydrolase
54
3BTZ|1|B+3BTZ|1|C		Crystal structure of human ABH2 cross-linked to dsDNAX-RAY DIFFRACTION313B-form double helix,double helix,structureenzyme,oxidoreductase
55
1F4R|1|D+1F4R|1|E		CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNAX-RAY DIFFRACTION2.413B-form double helix,double helix,structureenzyme,hydrolase
56
1BNK|1|D+1BNK|1|E		HUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNAX-RAY DIFFRACTION2.713B-form double helix,double helix,structureenzyme,hydrolase
57
1F6O|1|D+1F6O|1|E		CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNAX-RAY DIFFRACTION2.413B-form double helix,double helix,structureenzyme,hydrolase
58
3QI5|1|C		Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-RAY DIFFRACTION2.232enzyme,hydrolase
59
3QI5|1|E		Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-RAY DIFFRACTION2.230enzyme,hydrolase
60
3QI5|1|F		Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-RAY DIFFRACTION2.229enzyme,hydrolase
61
3QI5|1|D		Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-RAY DIFFRACTION2.230enzyme,hydrolase
62
3RB6|1|H		Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.713B-form double helix,double helix,structureenzyme,polymerase,transferase
63
3RAX|1|H		Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesionX-RAY DIFFRACTION1.89135B-form double helix,double helix,structureenzyme,polymerase,transferase
64
3RAQ|1|H		Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesionX-RAY DIFFRACTION2.2523enzyme,polymerase,transferase
65
1J1V|1|B+1J1V|1|C		Crystal structure of DnaA domainIV complexed with DnaAbox DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureDNA replication/repair,regulatory
66
3PVP|1|C		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-RAY DIFFRACTION2.321B-form double helix,double helix,structureDNA replication/repair,regulatory
67
3PVV|1|C		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-RAY DIFFRACTION223B-form double helix,double helix,structureDNA replication/repair,regulatory
68
3PVP|1|E		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-RAY DIFFRACTION2.318B-form double helix,double helix,structureDNA replication/repair,regulatory
69
3PVV|1|E		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-RAY DIFFRACTION232B-form double helix,double helix,structureDNA replication/repair,regulatory
70
1U8B|1|E+1U8B|1|D		Crystal structure of the methylated N-ADA/DNA complexX-RAY DIFFRACTION2.113B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription
71
1PP7|1|E+1PP7|1|F		Crystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin InrX-RAY DIFFRACTION2.4513B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
72
2KTQ|1|D+2KTQ|1|B		OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUSX-RAY DIFFRACTION2.313enzyme,polymerase,transferase
73
4KTQ|1|C+4KTQ|1|B		BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNAX-RAY DIFFRACTION2.513double helix,structureenzyme,polymerase,transferase
74
3PO5|1|C		Structure of a mutant of the large fragment of DNA polymerase I from Thermus Auqaticus in complex with an abasic site and ddATPX-RAY DIFFRACTION2.3936B-form double helix,double helix,structureenzyme,polymerase,transferase
75
1MEY|1|A+1MEY|1|B+1MEY|1|D+1MEY|1|E		CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNAX-RAY DIFFRACTION2.213B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
76
3E6C|1|A+3E6C|1|B		CprK OCPA DNA ComplexX-RAY DIFFRACTION1.813B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
77
1LLM|1|A+1LLM|1|B		Crystal Structure of a Zif23-GCN4 Chimera Bound to DNAX-RAY DIFFRACTION1.513B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
78
3OHA|1|T+3OHA|1|P		Yeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesionX-RAY DIFFRACTION213double helix,structureenzyme,polymerase,transferase
79
1GD2|1|A+1GD2|1|B		CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-RAY DIFFRACTION213B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
80
1GD2|1|C+1GD2|1|D		CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-RAY DIFFRACTION213B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
81
3G0R|1|G+3G0R|1|K		Complex of Mth0212 and an 8bp dsDNA with distorted endsX-RAY DIFFRACTION2.413B-form double helix,double helix,feature,mispair,structureenzyme,hydrolase,nuclease
82
3E54|1|C+3E54|1|E+3E54|1|D+3E54|1|F		Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNAX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
83
3QEB|1|A		Crystal structure of human exonuclease 1 Exo1 (WT) in complex with DNA and Mn2+ (complex III)X-RAY DIFFRACTION312double helix,structureenzyme,hydrolase,nuclease
84
3GFI|1|D+3GFI|1|E		Crystal structure of ST1710 complexed with its promoter DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
85
3RB0|1|D		Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 1-methylguanine (M1G) lesionX-RAY DIFFRACTION3.22517double helix,structureenzyme,polymerase,transferase
86
1SXQ|1|C+1SXQ|1|E		BGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,transferase
87
1SXQ|1|D+1SXQ|1|F		BGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,transferase
88
3RAQ|1|D		Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesionX-RAY DIFFRACTION2.2535enzyme,polymerase,transferase
89
3RAX|1|D		Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesionX-RAY DIFFRACTION1.89137B-form double helix,double helix,structureenzyme,polymerase,transferase
90
3KOV|1|C+3KOV|1|D		Structure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factorsX-RAY DIFFRACTION2.913B-form double helix,double helix,structureDNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription
91
3KOV|1|K+3KOV|1|L		Structure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factorsX-RAY DIFFRACTION2.913B-form double helix,double helix,structureDNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription
92
1YF3|1|C+1YF3|1|D		T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) ContactX-RAY DIFFRACTION2.2913enzyme,methylase,transferase
93
3L2C|1|B+3L2C|1|C		Crystal Structure of the DNA Binding Domain of FOXO4 Bound to DNAX-RAY DIFFRACTION1.86813B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
94
2UZK|1|B+2UZK|1|E		Crystal structure of the human FOXO3a-DBD bound to DNAX-RAY DIFFRACTION2.713double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
95
2UZK|1|D+2UZK|1|F		Crystal structure of the human FOXO3a-DBD bound to DNAX-RAY DIFFRACTION2.713double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
96
1ODH|1|C+1ODH|1|D		Structure of the GCM domain bound to DNAX-RAY DIFFRACTION2.8513B-form double helix,double helix,structureregulatory,transcription
97
3QZ7|1|P		T-3 ternary complex of Dpo4X-RAY DIFFRACTION1.99819B-form double helix,double helix,structureenzyme,polymerase,transferase
98
3QZ8|1|P		TT-4 ternary complex of Dpo4X-RAY DIFFRACTION1.99933B-form double helix,double helix,structureenzyme,polymerase,transferase
99
3PR4|1|P		Dpo4 Y12A mutant incorporating dADP opposite template dTX-RAY DIFFRACTION2.6522B-form double helix,double helix,structureenzyme,polymerase,transferase
100
3PR5|1|P		Dpo4 Y12A mutant incorporating ADP opposite template dTX-RAY DIFFRACTION2.423B-form double helix,double helix,structureenzyme,polymerase,transferase
101
3RB4|1|D		Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.80523B-form double helix,double helix,structureenzyme,polymerase,transferase
102
3RBD|1|D		Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.50222B-form double helix,double helix,structureenzyme,polymerase,transferase
103
3RB6|1|D		Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.719B-form double helix,double helix,structureenzyme,polymerase,transferase
104
3RBE|1|D		Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.814B-form double helix,double helix,structureenzyme,polymerase,transferase
105
3RB3|1|D		Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 1-methylguanine (m1g) lesionX-RAY DIFFRACTION2.814enzyme,polymerase,transferase
106
3RBD|1|H		Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.50215B-form double helix,double helix,structureenzyme,polymerase,transferase
107
1YO5|1|A+1YO5|1|B		Analysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory siteX-RAY DIFFRACTION213B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
108
3PVV|1|D		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-RAY DIFFRACTION226B-form double helix,double helix,structureDNA replication/repair,regulatory
109
3PVP|1|D		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-RAY DIFFRACTION2.319B-form double helix,double helix,structureDNA replication/repair,regulatory
110
3PVP|1|F		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-RAY DIFFRACTION2.318B-form double helix,double helix,structureDNA replication/repair,regulatory
111
3PVV|1|F		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-RAY DIFFRACTION224B-form double helix,double helix,structureDNA replication/repair,regulatory
112
1C7Y|1|B+1C7Y|1|D+1C7Y|1|F+1C7Y|1|H+1C7Y|1|C+1C7Y|1|E+1C7Y|1|G+1C7Y|1|I		E.COLI RUVA-HOLLIDAY JUNCTION COMPLEXX-RAY DIFFRACTION3.113enzyme,helicase,hydrolase
113
1DUX|1|D+1DUX|1|E		ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-RAY DIFFRACTION2.113DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
114
1DUX|1|A+1DUX|1|B		ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-RAY DIFFRACTION2.113DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
115
1T39|1|E+1T39|1|F		HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE COVALENTLY CROSSLINKED TO DNAX-RAY DIFFRACTION3.313double helix,structureenzyme,methylase,transferase
116
1T39|1|C+1T39|1|D		HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE COVALENTLY CROSSLINKED TO DNAX-RAY DIFFRACTION3.313double helix,structureenzyme,methylase,transferase
117
1T38|1|B+1T38|1|C		HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE BOUND TO DNA CONTAINING O6-METHYLGUANINEX-RAY DIFFRACTION3.213double helix,structureenzyme,methylase,transferase
118
3GYH|1|Y+3GYH|1|Z		Crystal Structure Analysis of S. Pombe ATL in complex with damaged DNA containing POBX-RAY DIFFRACTION2.813DNA replication/repair,regulatory
119
3GX4|1|Y+3GX4|1|Z		Crystal Structure Analysis of S. Pombe ATL in complex with DNAX-RAY DIFFRACTION2.713DNA replication/repair,regulatory
120
2Z6A|1|D+2Z6A|1|C		S-Adenosyl-L-methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates during DNA Cytosine MethylationX-RAY DIFFRACTION2.8813B-form double helix,double helix,structureenzyme,methylase,transferase
121
2ZCJ|1|D+2ZCJ|1|C		Ternary structure of the Glu119Gln M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcyX-RAY DIFFRACTION2.7513B-form double helix,double helix,structureenzyme,methylase,transferase
122
2Z6U|1|D+2Z6U|1|C		Ternary structure of the Glu119Ala M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcyX-RAY DIFFRACTION2.7213B-form double helix,double helix,structureenzyme,methylase,transferase
123
2HR1|1|D+2HR1|1|C		Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcyX-RAY DIFFRACTION1.9613B-form double helix,double helix,structureenzyme,methylase,transferase
124
3MHT|1|D+3MHT|1|C		TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH UNMODIFIED DNA AND ADOHCYX-RAY DIFFRACTION2.713B-form double helix,double helix,structureenzyme,methylase,transferase
125
4MHT|1|D+4MHT|1|C		TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH NATIVE DNA AND ADOHCYX-RAY DIFFRACTION2.713B-form double helix,double helix,structureenzyme,methylase,transferase
126
1MHT|1|C+1MHT|1|B		COVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S-ADENOSYL-L-HOMOCYSTEINEX-RAY DIFFRACTION2.613B-form double helix,double helix,structureenzyme,methylase,transferase
127
2OXV|1|C		Structure of the A138T promiscuous mutant of the EcoRI restriction endonuclease bound to its cognate recognition site.X-RAY DIFFRACTION1.9513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
128
1CL8|1|B		A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P)X-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,hydrolase,nuclease
129
1CKQ|1|B		PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEXX-RAY DIFFRACTION1.8513double helix,structureenzyme,hydrolase,nuclease
130
1QRI|1|M		X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN E144D MUTATION AT 2.7 AX-RAY DIFFRACTION2.613B-form double helix,double helix,structureenzyme,hydrolase,nuclease
131
1ERI|1|B		X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGEX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
132
1QRH|1|M		X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 AX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
133
1DC1|1|C+1DC1|1|W		RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLDX-RAY DIFFRACTION1.713double helix,structureenzyme,hydrolase,nuclease
134
1EYU|1|C+1EYU|1|D		HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6X-RAY DIFFRACTION1.7813double helix,structureenzyme,hydrolase,nuclease
135
1F0O|1|C+1F0O|1|D		PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITEX-RAY DIFFRACTION2.513double helix,structureenzyme,hydrolase,nuclease
136
1PVI|1|C+1PVI|1|D		STRUCTURE OF PVUII ENDONUCLEASE WITH COGNATE DNAX-RAY DIFFRACTION2.613double helix,structureenzyme,hydrolase,nuclease
137
2PVI|1|C+2PVI|1|D		PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNAX-RAY DIFFRACTION1.7613double helix,structureenzyme,hydrolase,nuclease
138
3PVI|1|C+3PVI|1|D		D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSISX-RAY DIFFRACTION1.5913double helix,structureenzyme,hydrolase,nuclease
139
1WTE|1|X+1WTE|1|Y		Crystal structure of type II restrcition endonuclease, EcoO109I complexed with cognate DNAX-RAY DIFFRACTION1.913double helix,structureenzyme,hydrolase,nuclease
140
1A73|1|C+1A73|1|E+1A73|1|D+1A73|1|F		INTRON-ENCODED ENDONUCLEASE I-PPOI COMPLEXED WITH DNAX-RAY DIFFRACTION1.813double helix,structureenzyme,hydrolase,nuclease
141
2PIS|1|E+2PIS|1|F		Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-RAY DIFFRACTION2.813B-form double helix,double helix,structure
142
3MR2|1|T+3MR2|1|P		Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm)X-RAY DIFFRACTION1.8313B-form double helix,double helix,structureenzyme,polymerase,transferase
143
2PIS|1|G+2PIS|1|H		Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-RAY DIFFRACTION2.813B-form double helix,double helix,structure
144
2PIS|1|A+2PIS|1|B		Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-RAY DIFFRACTION2.813B-form double helix,double helix,structure
145
2PIS|1|I+2PIS|1|J		Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-RAY DIFFRACTION2.813B-form double helix,double helix,structure
146
2IRF|1|D+2IRF|1|C		CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-RAY DIFFRACTION2.213B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
147
2IRF|1|F+2IRF|1|A		CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-RAY DIFFRACTION2.213B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
148
2IRF|1|E+2IRF|1|B		CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-RAY DIFFRACTION2.213B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
149
4BDP|1|T+4BDP|1|P		CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUESX-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,polymerase,transferase
150
3EYZ|1|C+3EYZ|1|B		Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form)X-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,polymerase,transferase
151
2ZO1|1|D+2ZO1|1|E		Mouse NP95 SRA domain DNA specific complex 2X-RAY DIFFRACTION1.9613B-form double helix,double helix,structureenzyme,ligase
152
2ZO0|1|D+2ZO0|1|E		mouse NP95 SRA domain DNA specific complex 1X-RAY DIFFRACTION2.1913B-form double helix,double helix,structureenzyme,ligase
153
1T7P|1|T+1T7P|1|P		T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXINX-RAY DIFFRACTION2.213double helix,structureenzyme,oxidoreductase,polymerase,transferase
154
3RB4|1|H		Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.80512B-form double helix,double helix,structureenzyme,polymerase,transferase
155
3RB0|1|H		Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 1-methylguanine (M1G) lesionX-RAY DIFFRACTION3.22516double helix,structureenzyme,polymerase,transferase
156
2UYH|1|C+2UYH|1|D		HhaI DNA methyltransferase S87Q-Q237S mutant complex with 13mer GCGC- GMGC oligonucleotide and SAHX-RAY DIFFRACTION2.6313enzyme,methylase,transferase
157
2C7O|1|C+2C7O|1|D		HhaI DNA methyltransferase complex with 13mer oligonucleotide containing 2-aminopurine adjacent to the target base (PCGC:GMGC) and SAHX-RAY DIFFRACTION1.913B-form double helix,double helix,structureenzyme,methylase,transferase
158
2UYC|1|C+2UYC|1|D		HhaI DNA methyltransferase R163N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-RAY DIFFRACTION213double helix,structureenzyme,methylase,transferase
159
2UZ4|1|C+2UZ4|1|D		HhaI DNA methyltransferase R165N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-RAY DIFFRACTION2.113double helix,structureenzyme,methylase,transferase
160
2C7Q|1|C+2C7Q|1|D		HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine outside the recognition sequence (paired with G) and SAHX-RAY DIFFRACTION1.8513enzyme,methylase,transferase
161
1SKM|1|C+1SKM|1|D		HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target siteX-RAY DIFFRACTION2.213B-form double helix,double helix,structureenzyme,methylase,transferase
162
2I9K|1|C+2I9K|1|D		Engineered Extrahelical Base Destabilization Enhances Sequence Discrimination of DNA Methyltransferase M.HhaIX-RAY DIFFRACTION2.6513B-form double helix,double helix,structureenzyme,methylase,transferase
163
1FJX|1|C+1FJX|1|D		STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCYX-RAY DIFFRACTION2.2613B-form double helix,double helix,structureenzyme,methylase,transferase
164
3RBE|1|H		Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesionX-RAY DIFFRACTION2.810B-form double helix,double helix,structureenzyme,polymerase,transferase
165
1OE5|1|F+1OE5|1|E		Xenopus SMUG1, an anti-mutator uracil-DNA GlycosylaseX-RAY DIFFRACTION2.313enzyme,hydrolase
166
1D31|1|A+1D31|1|B		THE THREE-DIMENSIONAL STRUCTURES OF BULGE-CONTAINING DNA FRAGMENTSX-RAY DIFFRACTION2.613double helix,structure
167
1IXY|1|C+1IXY|1|E		Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION2.513enzyme,transferase
168
1IXY|1|D+1IXY|1|F		Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION2.513enzyme,transferase
169
1M5R|1|C+1M5R|1|E		Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION1.813enzyme,transferase
170
1SXP|1|C+1SXP|1|D		BGT in complex with a 13mer DNA containing a central A:G mismatchX-RAY DIFFRACTION2.513enzyme,transferase
171
1M5R|1|D+1M5R|1|F		Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION1.813enzyme,transferase
172
1Y6F|1|C+1Y6F|1|D		alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic siteX-RAY DIFFRACTION2.413enzyme,transferase
173
1Y6G|1|C+1Y6G|1|D		alpha-glucosyltransferase in complex with UDP and a 13_mer DNA containing a HMU base at 2.8 A resolutionX-RAY DIFFRACTION2.813enzyme,transferase
174
3QE9|1|A		Crystal structure of human exonuclease 1 Exo1 (D173A) in complex with DNA (complex I)X-RAY DIFFRACTION2.5128B-form double helix,double helix,structureenzyme,hydrolase,nuclease
175
3QEA|1|A		Crystal structure of human exonuclease 1 Exo1 (WT) in complex with DNA (complex II)X-RAY DIFFRACTION3.112double helix,structureenzyme,hydrolase,nuclease
176
3QE9|1|C		Crystal structure of human exonuclease 1 Exo1 (D173A) in complex with DNA (complex I)X-RAY DIFFRACTION2.5117B-form double helix,double helix,structureenzyme,hydrolase,nuclease
177
2GXA|1|M		Crystal structure of papillomavirus E1 hexameric helicase with ssDNA and MgADPX-RAY DIFFRACTION3.1513DNA replication/repair,enzyme,helicase,hydrolase,regulatory
178
2GXA|1|N		Crystal structure of papillomavirus E1 hexameric helicase with ssDNA and MgADPX-RAY DIFFRACTION3.1513DNA replication/repair,enzyme,helicase,hydrolase,regulatory
179
1PUY|1|A		1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-RAY DIFFRACTION1.513B-form double helix,double helix,structure
180
1CS7|1|B		SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKERX-RAY DIFFRACTION3.213B-form double helix,double helix,structure
181
1CS7|1|D		SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKERX-RAY DIFFRACTION3.213B-form double helix,double helix,structure
182
1CS7|1|C		SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKERX-RAY DIFFRACTION3.213B-form double helix,double helix,structure
183
1CS7|1|A		SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKERX-RAY DIFFRACTION3.213B-form double helix,double helix,structure
184
1PUY|1|B		1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-RAY DIFFRACTION1.513B-form double helix,double helix,structure

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