Equivalence class DNA_2.5_40903.5 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 476D|1|A+ 476D|1|B (rep) | 5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | CALCIUM FORM OF B-DNA UNDECAMER GCGAATTCGCG | X-ray diffraction | 1.3 | 1999-07-19 | ||||
| 2 | 3GOX|1|C+ 3GOX|1|D | 5'-(*DCP*DTP*DCP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DA)-3', 5'-(*DTP*DAP*DCP*DGP*DTP*DCP*DGP*DAP*DGP*DTP*DC)-3' | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA | X-ray diffraction | 1.5 | 2009-04-28 | ||||
| 3 | 3MR3|1|T+ 3MR3|1|P | DNA (5'-D(*CP*AP*(TTD)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA (5'-D(*CP*AP*GP*CP*GP*TP*CP*AP*T)-3') | Human DNA polymerase eta - DNA ternary complex with the 3'T of a CPD in the active site (TT1) | X-ray diffraction | 1.75 | 2010-06-30 | ||||
| 4 | 3Q8K|1|E | DNA (5'-D(P*TP*GP*AP*GP*GP*CP*AP*GP*AP*GP*T)-3') | Crystal Structure of Human Flap Endonuclease FEN1 (WT) in complex with product 5'-flap DNA, SM3+, and K+ | X-ray diffraction | 2.2001 | 2011-04-27 | ||||
| 5 | 3FC3|1|D | 5'-(*DTP*DAP*DCP*DGP*DTP*DCP*DGP*DAP*DGP*DTP*DC)-3', 5'-(*DCP*DTP*DCP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DA)-3' | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I | X-ray diffraction | 1.75 | 2009-03-31 | ||||
| 6 | 1TEZ|1|I+ 1TEZ|1|J | 5'-D(*AP*TP*CP*GP*GP*CP*T*(TCP)P*CP*GP*C)-3', 5'-D(P*CP*GP*AP*AP*GP*CP*CP*GP*A)-3' | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-ray diffraction | 1.8 | 2004-12-14 | ||||
| 7 | 1TEZ|1|K+ 1TEZ|1|L | 5'-D(*AP*TP*CP*GP*GP*CP*T*(TCP)P*CP*GP*C)-3', 5'-D(P*CP*GP*AP*AP*GP*CP*CP*GP*A)-3' | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-ray diffraction | 1.8 | 2004-12-14 | ||||
| 8 | 3PNC|1|C+ 3PNC|1|B+ 3PNC|1|D | 5'-D(*CP*AP*GP*TP*AP*G)-3', 5'-D(*CP*GP*GP*CP*CP*TP*TP*AP*CP*TP*G)-3', 5'-D(*GP*CP*CP*G)-3' | Ternary crystal structure of a polymerase lambda variant with a GT mispair at the primer terminus and sodium at catalytic metal site | X-ray diffraction | 2 | 2011-02-02 | ||||
| 9 | 2X6V|1|C+ 2X6V|1|D | 5'-D(*TP*CP*TP*CP*AP*CP*AP*CP*CP*TP*TP)-3', 5'-D(*TP*AP*AP*GP*GP*TP*GP*TP*GP*AP*GP)-3' | synthetic construct | Crystal structure of human TBX5 in the DNA-bound and DNA-free form | X-ray diffraction | 2.2 | 2010-04-28 | |||
| 10 | 1ORN|1|B+ 1ORN|1|C | 5'-D(*AP*AP*GP*AP*CP*GP*TP*GP*GP*AP*C)-3', 5'-D(*T*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*T)-3' | Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Guanine Complex | X-ray diffraction | 1.7 | 2003-07-15 | ||||
| 11 | 2PFN|1|T+ 2PFN|1|P+ 2PFN|1|D | Downstream Primer, Primer, Template | Na in the active site of DNA Polymerase lambda | X-ray diffraction | 1.9 | 2007-05-15 | ||||
| 12 | 2PFO|1|T+ 2PFO|1|P+ 2PFO|1|D | Downstream Primer, Primer, Template | DNA Polymerase lambda in complex with DNA and dUPNPP | X-ray diffraction | 2 | 2007-05-15 | ||||
| 13 | 2XSD|1|A+ 2XSD|1|B | 5'-D(*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*AP)-3', 5'-D(*CP*CP*TP*CP*AP*TP*GP*CP*AP*TP*AP)-3' | Crystal Structure of the dimeric Oct-6 (Pou3f1) POU domain bound to palindromic MORE DNA | X-ray diffraction | 2.049 | 2010-10-20 | ||||
| 14 | 2PFP|1|T+ 2PFP|1|P+ 2PFP|1|D | Downstream Primer, Primer, Template | DNA Polymerase lambda in complex with DNA and dCTP | X-ray diffraction | 2.1 | 2007-05-15 | ||||
| 15 | 1XSN|1|T+ 1XSN|1|P+ 1XSN|1|D | 5'-D(P*GP*CP*CP*G)-3', 5'-D(*CP*AP*GP*TP*AP*(2DT))-3', 5'-D(*CP*GP*GP*CP*AP*AP*TP*AP*CP*TP*G)-3' | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap and ddTTP | X-ray diffraction | 1.95 | 2005-01-18 | ||||
| 16 | 3PMN|1|B+ 3PMN|1|C+ 3PMN|1|D | 5'-D(*CP*GP*GP*CP*CP*TP*TP*AP*CP*TP*G)-3', 5'-D(*CP*AP*GP*TP*AP*G)-3', 5'-D(*GP*CP*CP*G)-3' | ternary crystal structure of polymerase lambda variant with a GT mispair at the primer terminus with Mn2+ in the active site | X-ray diffraction | 2.2 | 2011-02-02 | ||||
| 17 | 1XSP|1|T+ 1XSP|1|P+ 1XSP|1|D | 5'-D(P*GP*CP*CP*G)-3', 5'-D(*CP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*GP*CP*CP*GP*TP*AP*CP*TP*G)-3' | Crystal Structure of human DNA polymerase lambda in complex with nicked DNA and pyrophosphate | X-ray diffraction | 2.2 | 2005-01-18 | ||||
| 18 | 3C5G|1|T+ 3C5G|1|P+ 3C5G|1|D | DNA (5'-D(*DCP*DGP*DGP*DCP*DAP*DAP*DTP*DAP*DCP*DTP*DG)-3'), DNA (5'-D(*DCP*DAP*DGP*DTP*DAP*(2DT))-3'), DNA (5'-D(P*DGP*DCP*DCP*DG)-3') | Structure of a ternary complex of the R517K Pol lambda mutant | X-ray diffraction | 2.2 | 2008-07-29 | ||||
| 19 | 3C5G|1|U+ 3C5G|1|Q+ 3C5G|1|E | DNA (5'-D(*DCP*DGP*DGP*DCP*DAP*DAP*DTP*DAP*DCP*DTP*DG)-3'), DNA (5'-D(*DCP*DAP*DGP*DTP*DAP*(2DT))-3'), DNA (5'-D(P*DGP*DCP*DCP*DG)-3') | Structure of a ternary complex of the R517K Pol lambda mutant | X-ray diffraction | 2.2 | 2008-07-29 | ||||
| 20 | 1RZT|1|B+ 1RZT|1|C+ 1RZT|1|D | 5'-D(*CP*GP*GP*CP*AP*AP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-ray diffraction | 2.1 | 2004-03-02 | ||||
| 21 | 2P0J|1|C+ 2P0J|1|D | 5'-D(*AP*TP*GP*AP*AP*TP*CP*CP*AP*TP*A)-3', 5'-D(*TP*AP*TP*GP*GP*AP*TP*TP*CP*AP*T)-3' | Structure of restriction endonuclease BstYI bound to non-cognate DNA | X-ray diffraction | 2.1 | 2007-05-01 | ||||
| 22 | 1RZT|1|F+ 1RZT|1|G+ 1RZT|1|H | 5'-D(*CP*GP*GP*CP*AP*AP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-ray diffraction | 2.1 | 2004-03-02 | ||||
| 23 | 1RZT|1|J+ 1RZT|1|K+ 1RZT|1|L | 5'-D(*CP*GP*GP*CP*AP*AP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-ray diffraction | 2.1 | 2004-03-02 | ||||
| 24 | 1RZT|1|N+ 1RZT|1|O+ 1RZT|1|P | 5'-D(*CP*GP*GP*CP*AP*AP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-ray diffraction | 2.1 | 2004-03-02 | ||||
| 25 | 3Q8P|1|T | DNA (5'-D(*TP*CP*AP*(8OG)P*GP*GP*GP*TP*CP*CP*T)-3') | synthetic construct | Human DNA polymerase iota incorporating dCTP opposite 8-oxo-guanine | X-ray diffraction | 1.95 | 2011-02-23 | |||
| 26 | 3MQY|1|D+ 3MQY|1|F+ 3MQY|1|C+ 3MQY|1|E | DNA (5'-D(P*CP*CP*GP*GP*TP*GP*GP*AP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*TP*CP*CP*A)-3') | SgrAI with cleaved DNA and Magnesium bound | X-ray diffraction | 2 | 2010-11-24 | ||||
| 27 | 3Q8Q|1|T | DNA (5'-D(*TP*CP*AP*(8OG)P*GP*GP*GP*TP*CP*CP*T)-3') | synthetic construct | Human DNA polymerase iota incorporating dATP opposite 8-oxo-guanine | X-ray diffraction | 2.031 | 2011-02-23 | |||
| 28 | 3MDA|1|T+ 3MDA|1|P+ 3MDA|1|D | DNA (5'-D(P*GP*CP*CP*G)-3'), DNA (5'-D(*CP*AP*GP*TP*AP*CP*(CAR))-3'), DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3') | DNA polymerase lambda in complex with araC | X-ray diffraction | 2.031 | 2010-04-28 | ||||
| 29 | 3G6Y|1|T+ 3G6Y|1|P | Template DNA strand, Primer DNA strand | Ternary complex of DNA Polymerase iota:DNA:dTTP with an abasic site at the templating position | X-ray diffraction | 2.1 | 2009-05-12 | ||||
| 30 | 1XSL|1|B+ 1XSL|1|C+ 1XSL|1|D | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-ray diffraction | 2.3 | 2005-01-18 | ||||
| 31 | 1XSL|1|F+ 1XSL|1|G+ 1XSL|1|H | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-ray diffraction | 2.3 | 2005-01-18 | ||||
| 32 | 1XSL|1|J+ 1XSL|1|K+ 1XSL|1|L | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-ray diffraction | 2.3 | 2005-01-18 | ||||
| 33 | 1XSL|1|N+ 1XSL|1|O+ 1XSL|1|P | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-ray diffraction | 2.3 | 2005-01-18 | ||||
| 34 | 3MDC|1|T+ 3MDC|1|P+ 3MDC|1|D | DNA (5'-D(P*GP*CP*CP*G)-3'), DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3') | DNA polymerase lambda in complex with dFdCTP | X-ray diffraction | 1.999 | 2010-04-28 | ||||
| 35 | 3C5F|1|T+ 3C5F|1|P+ 3C5F|1|D | DNA (5'-D(*DCP*DGP*DGP*DCP*DCP*DGP*DTP*DAP*DCP*DTP*DG)-3'), DNA (5'-D(*DCP*DAP*DGP*DTP*DAP*DC)-3'), DNA (5'-D(P*DGP*DCP*DCP*DG)-3') | Structure of a binary complex of the R517A Pol lambda mutant | X-ray diffraction | 2.25 | 2008-09-02 | ||||
| 36 | 3C5F|1|U+ 3C5F|1|Q+ 3C5F|1|E | DNA (5'-D(*DCP*DGP*DGP*DCP*DCP*DGP*DTP*DAP*DCP*DTP*DG)-3'), DNA (5'-D(*DCP*DAP*DGP*DTP*DAP*DC)-3'), DNA (5'-D(P*DGP*DCP*DCP*DG)-3') | Structure of a binary complex of the R517A Pol lambda mutant | X-ray diffraction | 2.25 | 2008-09-02 | ||||
| 37 | 3Q8S|1|T | DNA (5'-D(*TP*CP*AP*(8OG)P*GP*GP*GP*TP*CP*CP*T)-3') | synthetic construct | Human DNA polymerase iota incorporating dTTP opposite 8-oxo-guanine | X-ray diffraction | 2.09 | 2011-02-23 | |||
| 38 | 1ORP|1|B+ 1ORP|1|C | 5'-D(*AP*AP*GP*AP*CP*AP*TP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*T)-3' | Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Adenine Complex | X-ray diffraction | 2.2 | 2003-07-15 | ||||
| 39 | 3KET|1|B+ 3KET|1|C | DNA (5'-D(*AP*AP*TP*TP*GP*TP*GP*AP*AP*AP*T)-3'), DNA (5'-D(P*AP*TP*TP*TP*CP*AP*CP*AP*AP*TP*T)-3') | synthetic construct | Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae bound to a palindromic operator | X-ray diffraction | 2.4 | 2010-11-10 | |||
| 40 | 3MGH|1|E+ 3MGH|1|F+ 3MGH|1|G | DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'), DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*CP*CP*G)-3') | Binary complex of a DNA polymerase lambda loop mutant | X-ray diffraction | 2.4 | 2010-05-19 | ||||
| 41 | 3MGH|1|T+ 3MGH|1|P+ 3MGH|1|D | DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'), DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*CP*CP*G)-3') | Binary complex of a DNA polymerase lambda loop mutant | X-ray diffraction | 2.4 | 2010-05-19 | ||||
| 42 | 1RRQ|1|B+ 1RRQ|1|C | 5'-D(AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*CP*AP*AP*GP*TP*CP*T)-3' | MutY adenine glycosylase in complex with DNA containing an A:oxoG pair | X-ray diffraction | 2.22 | 2004-02-17 | ||||
| 43 | 3GXQ|1|D+ 3GXQ|1|C | DNA (5'-D(*AP*CP*AP*TP*GP*TP*CP*AP*TP*GP*T)-3'), DNA (5'-D(*AP*CP*AP*TP*GP*AP*CP*AP*TP*G)-3') | Structure of ArtA and DNA complex | X-ray diffraction | 2.35 | 2009-10-13 | ||||
| 44 | 3G6X|1|T+ 3G6X|1|P | Template DNA strand, Primer DNA strand | Ternary complex of DNA Polymerase iota:DNA:dGTP with an abasic site at the templating position | X-ray diffraction | 2.08 | 2009-05-12 | ||||
| 45 | 3Q8R|1|T | DNA (5'-D(*TP*CP*AP*(8OG)P*GP*GP*GP*TP*CP*CP*T)-3') | synthetic construct | Human DNA polymerase iota incorporating dGTP opposite 8-oxo-guanine | X-ray diffraction | 2.45 | 2011-02-23 | |||
| 46 | 2Z3X|1|D+ 2Z3X|1|E | 5'-D(*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*A)-3', 5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*A)-3' | synthetic construct | Structure of a Protein-DNA Complex Essential for DNA Protection in Spore of Bacillus Species | X-ray diffraction | 2.1 | 2008-02-12 | |||
| 47 | 2PFQ|1|T+ 2PFQ|1|P+ 2PFQ|1|D | Downstream Primer, Primer, Template | Manganese promotes catalysis in a DNA polymerase lambda-DNA crystal | X-ray diffraction | 2.1 | 2007-05-15 | ||||
| 48 | 1P59|1|B+ 1P59|1|C | 5'-D(*AP*AP*GP*AP*CP*GP*(5IU)P*GP*GP*AP*C)-3', 5'-D(TP*GP*(5IU)P*CP*CP*AP*(3DR)P*GP*(5IU)P*CP*T)-3' | Structure of a non-covalent Endonuclease III-DNA Complex | X-ray diffraction | 2.5 | 2003-07-15 | ||||
| 49 | 2R9L|1|D+ 2R9L|1|F+ 2R9L|1|C+ 2R9L|1|E | DNA (5'-D(*DGP*DCP*DCP*DGP*DCP*DAP*DAP*DCP*DGP*DCP*DA)-3'), DNA (5'-D(*DGP*DCP*DCP*DGP*DCP*DAP*DAP*DCP*DGP*DCP*DAP*DCP*DG)-3'), DNA (5'-D(P*DGP*DCP*DGP*DGP*DC)-3') | synthetic construct | Polymerase Domain from Mycobacterium tuberculosis Ligase D in complex with DNA | X-ray diffraction | 2.4 | 2008-01-08 | |||
| 50 | 2FLP|1|T+ 2FLP|1|P | DNA template strand, DNA primer strand | Binary complex of the catalytic core of human DNA polymerase iota with DNA (template G) | X-ray diffraction | 2.4 | 2006-12-05 | ||||
| 51 | 2IHM|1|T+ 2IHM|1|P+ 2IHM|1|D | 5'-D(*CP*GP*GP*CP*AP*AP*TP*AP*CP*TP*G)-3', 5'-D(*CP*AP*GP*TP*AP*T)-3', 5'-D(P*GP*CP*CP*G)-3' | Polymerase mu in ternary complex with gapped 11mer DNA duplex and bound incoming nucleotide | X-ray diffraction | 2.4 | 2006-12-12 | ||||
| 52 | 2IHM|1|U+ 2IHM|1|Q+ 2IHM|1|E | 5'-D(*CP*GP*GP*CP*AP*AP*TP*AP*CP*TP*G)-3', 5'-D(*CP*AP*GP*TP*AP*T)-3', 5'-D(P*GP*CP*CP*G)-3' | Polymerase mu in ternary complex with gapped 11mer DNA duplex and bound incoming nucleotide | X-ray diffraction | 2.4 | 2006-12-12 | ||||
| 53 | 2FLN|1|T+ 2FLN|1|P | DNA template strand, DNA primer strand | binary complex of catalytic core of human DNA polymerase iota with DNA (template A) | X-ray diffraction | 2.5 | 2006-12-05 | ||||
| 54 | 1RRS|1|B+ 1RRS|1|C | 5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*T)-3' | MutY adenine glycosylase in complex with DNA containing an abasic site | X-ray diffraction | 2.4 | 2004-02-17 | ||||
| 55 | 2GE5|1|C+ 2GE5|1|D | 5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3' | EcoRV Restriction Endonuclease C-terminal deletion mutant/GATATC/Ca2+ | X-ray diffraction | 2.4 | 2006-07-04 | ||||
| 56 | 1AAY|1|B+ 1AAY|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3') | ZIF268 ZINC FINGER-DNA COMPLEX | X-ray diffraction | 1.6 | 1997-04-21 | ||||
| 57 | 1A1H|1|B+ 1A1H|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3') | QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-ray diffraction | 1.6 | 1998-06-10 | ||||
| 58 | 1A1I|1|B+ 1A1I|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3') | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-ray diffraction | 1.6 | 1998-06-17 | ||||
| 59 | 1EON|1|C+ 1EON|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3'), DNA (5'-D(*CP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3') | ECORV BOUND TO 3'-S-PHOSPHOROTHIOLATE DNA AND CA2+ | X-ray diffraction | 1.6 | 2000-04-04 | ||||
| 60 | 1JK2|1|B+ 1JK2|1|C | 5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*TP*G)-3', 5'-D(*TP*CP*AP*GP*CP*CP*CP*AP*CP*GP*C)-3' | Zif268 D20A mutant bound to the GCT DNA site | X-ray diffraction | 1.65 | 2001-10-19 | ||||
| 61 | 1SUZ|1|C+ 1SUZ|1|D | 5'-D(*C*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3' | The structure of K92A EcoRV bound to cognate DNA and Mg2+ | X-ray diffraction | 1.8 | 2004-04-06 | ||||
| 62 | 1E3O|1|A+ 1E3O|1|B | 5'-D(*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*A)-3', 5'-D(*TP*CP*CP*TP*CP*AP*TP*GP*CP*AP*T)-3' | Homo sapiens | Crystal structure of Oct-1 POU dimer bound to MORE | X-ray diffraction | 1.9 | 2001-11-10 | |||
| 63 | 1A1K|1|B+ 1A1K|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*TP*CP*CP*CP*AP*CP*GP*C)-3') | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) | X-ray diffraction | 1.9 | 1998-06-10 | ||||
| 64 | 1JK1|1|B+ 1JK1|1|C | 5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*G)-3', 5'-D(*TP*CP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3' | Zif268 D20A Mutant Bound to WT DNA Site | X-ray diffraction | 1.9 | 2001-10-19 | ||||
| 65 | 1A1G|1|B+ 1A1G|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3') | DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) | X-ray diffraction | 1.9 | 1998-06-10 | ||||
| 66 | 1SSP|1|B+ 1SSP|1|A | 5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3', 5'-D(*CP*TP*GP*TP*(D1P)P*AP*TP*CP*TP*T)-3' | WILD-TYPE URACIL-DNA GLYCOSYLASE BOUND TO URACIL-CONTAINING DNA | X-ray diffraction | 1.9 | 1999-05-06 | ||||
| 67 | 1B94|1|C+ 1B94|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | RESTRICTION ENDONUCLEASE ECORV WITH CALCIUM | X-ray diffraction | 1.9 | 1999-02-26 | ||||
| 68 | 2B0E|1|C+ 2B0E|1|D | 5'-D(*AP*AP*AP*GP*AP*AP*(DU)P*TP*CP*TP*T)-3' | EcoRV Restriction Endonuclease/GAAUTC/Ca2+ | X-ray diffraction | 1.9 | 2005-09-27 | ||||
| 69 | 1B97|1|C+ 1B97|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP | X-ray diffraction | 1.9 | 1999-02-26 | ||||
| 70 | 1A1J|1|B+ 1A1J|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3') | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) | X-ray diffraction | 2 | 1998-06-17 | ||||
| 71 | 1RVA|1|C+ 1RVA|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION | X-ray diffraction | 2 | 1995-01-26 | ||||
| 72 | 2B0D|1|C+ 2B0D|1|D | 5'-D(*AP*AP*AP*GP*AP*AP*TP*TP*CP*TP*T)-3' | EcoRV Restriction Endonuclease/GAATTC/Ca2+ | X-ray diffraction | 2 | 2005-09-27 | ||||
| 73 | 1AZ0|1|C+ 1AZ0|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | ECORV ENDONUCLEASE/DNA COMPLEX | X-ray diffraction | 2 | 1998-06-19 | ||||
| 74 | 1BGB|1|C+ 1BGB|1|D | DNA (5'-D(*CP*GP*GP*GP*AP*TP*AP*TP*CP*CP*C)-3') | ECORV ENDONUCLEASE COMPLEX WITH 5'-CGGGATATCCC DNA | X-ray diffraction | 2 | 1998-10-28 | ||||
| 75 | 1EO3|1|C+ 1EO3|1|D | DNA (5'-D(*CP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3') | INHIBITION OF ECORV ENDONUCLEASE BY DEOXYRIBO-3'-S-PHOSPHOROTHIOLATES: A HIGH RESOLUTION X-RAY CRYSTALLOGRAPHIC STUDY | X-ray diffraction | 2 | 2000-04-04 | ||||
| 76 | 1BSU|1|D+ 1BSU|1|C | DNA (5'-D(*AP*AP*AP*GP*AP*(5CM)P*IP*TP*CP*TP*T)-3'), DNA (5'-D(P*AP*AP*GP*AP*(5CM)P*IP*TP*CP*TP*T)-3') | STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE | X-ray diffraction | 2 | 1998-09-09 | ||||
| 77 | 1BC7|1|A+ 1BC7|1|B | DNA (5'-D(*GP*AP*CP*AP*GP*GP*AP*TP*GP*TP*G)-3'), DNA (5'-D(*CP*AP*CP*AP*TP*CP*CP*TP*GP*TP*C)-3') | SERUM RESPONSE FACTOR ACCESSORY PROTEIN 1A (SAP-1)/DNA COMPLEX | X-ray diffraction | 2.01 | 1999-01-21 | ||||
| 78 | 1B95|1|C+ 1B95|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP | X-ray diffraction | 2.05 | 1999-02-26 | ||||
| 79 | 1ZAA|1|A+ 1ZAA|1|B | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3') | ZINC FINGER-DNA RECOGNITION: CRYSTAL STRUCTURE OF A ZIF268-DNA COMPLEX AT 2.1 ANGSTROMS | X-ray diffraction | 2.1 | 1993-10-31 | ||||
| 80 | 1A1F|1|B+ 1A1F|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*TP*CP*CP*CP*AP*CP*GP*C)-3') | DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) | X-ray diffraction | 2.1 | 1998-06-10 | ||||
| 81 | 1RV5|1|C+ 1RV5|1|D | 5'-D(*AP*AP*AP*GP*AP*T*AP*TP*CP*TP*T)-3' | COMPLEX OF ECORV ENDONUCLEASE WITH D(AAAGAT)/D(ATCTT) | X-ray diffraction | 2.1 | 1998-11-11 | ||||
| 82 | 1A3Q|1|C+ 1A3Q|1|D | DNA (5'-D(*GP*GP*GP*GP*AP*AP*TP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*AP*TP*TP*CP*CP*CP*C)-3') | HUMAN NF-KAPPA-B P52 BOUND TO DNA | X-ray diffraction | 2.1 | 1998-06-11 | ||||
| 83 | 1RVB|1|C+ 1RVB|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION | X-ray diffraction | 2.1 | 1995-01-26 | ||||
| 84 | 1BUA|1|C+ 1BUA|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*CP*IP*TP*CP*TP*T)-3') | STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE | X-ray diffraction | 2.15 | 1998-09-09 | ||||
| 85 | 1SX8|1|C+ 1SX8|1|D | 5'-D(*C*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3' | EcoRV bound to cognate DNA and Mn2+ | X-ray diffraction | 2.15 | 2004-04-06 | ||||
| 86 | 1BSS|1|C+ 1BSS|1|D | 5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3' | ECORV-T93A/DNA/CA2+ | X-ray diffraction | 2.15 | 1998-09-02 | ||||
| 87 | 3G0Q|1|B+ 3G0Q|1|C | 5'-D(*AP*AP*GP*AP*CP*(8OG)P*GP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*CP*AP*GP*TP*CP*TP*T)-3' | Crystal Structure of MutY bound to its inhibitor DNA | X-ray diffraction | 2.2 | 2009-11-17 | ||||
| 88 | 2SSP|1|B+ 2SSP|1|A | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*TP*(AAB)P*AP*TP*CP*TP*T)-3') | LEUCINE-272-ALANINE URACIL-DNA GLYCOSYLASE BOUND TO ABASIC SITE-CONTAINING DNA | X-ray diffraction | 2.25 | 1999-05-06 | ||||
| 89 | 1A1L|1|B+ 1A1L|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3') | ZIF268 ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-ray diffraction | 2.3 | 1998-06-17 | ||||
| 90 | 1B96|1|C+ 1B96|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP | X-ray diffraction | 2.3 | 1999-02-26 | ||||
| 91 | 1NFK|1|C+ 1NFK|1|D | DNA (5'-D(*TP*GP*GP*GP*AP*AP*TP*TP*CP*CP*C)-3') | STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER | X-ray diffraction | 2.3 | 1996-12-23 | ||||
| 92 | 1KU7|1|B+ 1KU7|1|C | 5'-D(*CP*CP*TP*TP*GP*AP*CP*AP*AP*AP*G)-3', 5'-D(*CP*CP*TP*TP*TP*GP*TP*CP*AP*AP*G)-3' | Crystal Structure of Thermus aquatics RNA Polymerase SigmaA Subunit Region 4 Bound to-35 Element DNA | X-ray diffraction | 2.4 | 2002-03-29 | ||||
| 93 | 2GWS|1|F+ 2GWS|1|G+ 2GWS|1|H | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-ray diffraction | 2.4 | 2006-09-05 | ||||
| 94 | 2GWS|1|J+ 2GWS|1|K+ 2GWS|1|L | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-ray diffraction | 2.4 | 2006-09-05 | ||||
| 95 | 2GWS|1|N+ 2GWS|1|R+ 2GWS|1|Q | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-ray diffraction | 2.4 | 2006-09-05 | ||||
| 96 | 2GWS|1|T+ 2GWS|1|P+ 2GWS|1|D | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-ray diffraction | 2.4 | 2006-09-05 | ||||
| 97 | 3L1Q|1|A+ 3L1Q|1|B | 5'-D(*TP*GP*GP*CP*CP*TP*TP*AP*AP*GP*G)-3' | The crystal structure of the undecamer d(TGGCCTTAAGG) | X-ray diffraction | 2.5 | 2010-10-27 | ||||
| 98 | 1VRL|1|B+ 1VRL|1|C | 5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*T)-3' | MutY adenine glycosylase in complex with DNA and soaked adenine free base | X-ray diffraction | 2.5 | 2005-03-22 |
Release history
| Release | 0.19 |
|---|---|
| Date | 2011-05-28 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2R9L|1|D+2R9L|1|F+2R9L|1|C+2R9L|1|E | Polymerase Domain from Mycobacterium tuberculosis Ligase D in complex with DNA | X-RAY DIFFRACTION | 2.4 | 11 | B-form double helix,double helix,structure | enzyme,ligase |
| 2 | 2GWS|1|T+2GWS|1|P+2GWS|1|D | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-RAY DIFFRACTION | 2.4 | 11 | enzyme,polymerase,transferase | |
| 3 | 2GWS|1|N+2GWS|1|R+2GWS|1|Q | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-RAY DIFFRACTION | 2.4 | 11 | enzyme,polymerase,transferase | |
| 4 | 2GWS|1|J+2GWS|1|K+2GWS|1|L | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-RAY DIFFRACTION | 2.4 | 11 | enzyme,polymerase,transferase | |
| 5 | 2GWS|1|F+2GWS|1|G+2GWS|1|H | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-RAY DIFFRACTION | 2.4 | 11 | enzyme,polymerase,transferase | |
| 6 | 1XSL|1|F+1XSL|1|G+1XSL|1|H | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-RAY DIFFRACTION | 2.3 | 11 | enzyme,polymerase,transferase | |
| 7 | 1XSL|1|J+1XSL|1|K+1XSL|1|L | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-RAY DIFFRACTION | 2.3 | 11 | enzyme,polymerase,transferase | |
| 8 | 1XSL|1|N+1XSL|1|O+1XSL|1|P | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-RAY DIFFRACTION | 2.3 | 11 | enzyme,polymerase,transferase | |
| 9 | 1XSL|1|B+1XSL|1|C+1XSL|1|D | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-RAY DIFFRACTION | 2.3 | 11 | enzyme,polymerase,transferase | |
| 10 | 1RZT|1|F+1RZT|1|G+1RZT|1|H | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-RAY DIFFRACTION | 2.1 | 11 | enzyme,polymerase,transferase | |
| 11 | 1RZT|1|B+1RZT|1|C+1RZT|1|D | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-RAY DIFFRACTION | 2.1 | 11 | enzyme,polymerase,transferase | |
| 12 | 1RZT|1|N+1RZT|1|O+1RZT|1|P | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-RAY DIFFRACTION | 2.1 | 11 | enzyme,polymerase,transferase | |
| 13 | 1RZT|1|J+1RZT|1|K+1RZT|1|L | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-RAY DIFFRACTION | 2.1 | 11 | enzyme,polymerase,transferase | |
| 14 | 3MGH|1|E+3MGH|1|F+3MGH|1|G | Binary complex of a DNA polymerase lambda loop mutant | X-RAY DIFFRACTION | 2.4 | 11 | enzyme,polymerase,transferase | |
| 15 | 3MGH|1|T+3MGH|1|P+3MGH|1|D | Binary complex of a DNA polymerase lambda loop mutant | X-RAY DIFFRACTION | 2.4 | 11 | enzyme,polymerase,transferase | |
| 16 | 3PNC|1|C+3PNC|1|B+3PNC|1|D | Ternary crystal structure of a polymerase lambda variant with a GT mispair at the primer terminus and sodium at catalytic metal site | X-RAY DIFFRACTION | 2 | 11 | enzyme,polymerase,transferase | |
| 17 | 3PMN|1|B+3PMN|1|C+3PMN|1|D | ternary crystal structure of polymerase lambda variant with a GT mispair at the primer terminus with Mn2+ in the active site | X-RAY DIFFRACTION | 2.2 | 11 | enzyme,polymerase,transferase | |
| 18 | 3MDC|1|T+3MDC|1|P+3MDC|1|D | DNA polymerase lambda in complex with dFdCTP | X-RAY DIFFRACTION | 1.999 | 11 | enzyme,polymerase,transferase | |
| 19 | 2PFN|1|T+2PFN|1|P+2PFN|1|D | Na in the active site of DNA Polymerase lambda | X-RAY DIFFRACTION | 1.9 | 11 | enzyme,polymerase,transferase | |
| 20 | 1XSN|1|T+1XSN|1|P+1XSN|1|D | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap and ddTTP | X-RAY DIFFRACTION | 1.95 | 11 | enzyme,polymerase,transferase | |
| 21 | 2PFO|1|T+2PFO|1|P+2PFO|1|D | DNA Polymerase lambda in complex with DNA and dUPNPP | X-RAY DIFFRACTION | 2 | 11 | enzyme,polymerase,transferase | |
| 22 | 3MDA|1|T+3MDA|1|P+3MDA|1|D | DNA polymerase lambda in complex with araC | X-RAY DIFFRACTION | 2.031 | 11 | enzyme,polymerase,transferase | |
| 23 | 1XSP|1|T+1XSP|1|P+1XSP|1|D | Crystal Structure of human DNA polymerase lambda in complex with nicked DNA and pyrophosphate | X-RAY DIFFRACTION | 2.2 | 11 | enzyme,polymerase,transferase | |
| 24 | 2PFP|1|T+2PFP|1|P+2PFP|1|D | DNA Polymerase lambda in complex with DNA and dCTP | X-RAY DIFFRACTION | 2.1 | 11 | enzyme,polymerase,transferase | |
| 25 | 2PFQ|1|T+2PFQ|1|P+2PFQ|1|D | Manganese promotes catalysis in a DNA polymerase lambda-DNA crystal | X-RAY DIFFRACTION | 2.1 | 11 | enzyme,polymerase,transferase | |
| 26 | 3C5G|1|U+3C5G|1|Q+3C5G|1|E | Structure of a ternary complex of the R517K Pol lambda mutant | X-RAY DIFFRACTION | 2.2 | 11 | enzyme,polymerase,transferase | |
| 27 | 3C5G|1|T+3C5G|1|P+3C5G|1|D | Structure of a ternary complex of the R517K Pol lambda mutant | X-RAY DIFFRACTION | 2.2 | 11 | enzyme,polymerase,transferase | |
| 28 | 2IHM|1|T+2IHM|1|P+2IHM|1|D | Polymerase mu in ternary complex with gapped 11mer DNA duplex and bound incoming nucleotide | X-RAY DIFFRACTION | 2.4 | 11 | enzyme,polymerase,transferase | |
| 29 | 3C5F|1|T+3C5F|1|P+3C5F|1|D | Structure of a binary complex of the R517A Pol lambda mutant | X-RAY DIFFRACTION | 2.25 | 11 | enzyme,polymerase,transferase | |
| 30 | 3C5F|1|U+3C5F|1|Q+3C5F|1|E | Structure of a binary complex of the R517A Pol lambda mutant | X-RAY DIFFRACTION | 2.25 | 11 | enzyme,polymerase,transferase | |
| 31 | 2IHM|1|U+2IHM|1|Q+2IHM|1|E | Polymerase mu in ternary complex with gapped 11mer DNA duplex and bound incoming nucleotide | X-RAY DIFFRACTION | 2.4 | 11 | enzyme,polymerase,transferase | |
| 32 | 3MR3|1|T+3MR3|1|P | Human DNA polymerase eta - DNA ternary complex with the 3'T of a CPD in the active site (TT1) | X-RAY DIFFRACTION | 1.75 | 11 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 33 | 2FLN|1|T+2FLN|1|P | binary complex of catalytic core of human DNA polymerase iota with DNA (template A) | X-RAY DIFFRACTION | 2.5 | 11 | double helix,structure | enzyme,polymerase,transferase |
| 34 | 3Q8P|1|T | Human DNA polymerase iota incorporating dCTP opposite 8-oxo-guanine | X-RAY DIFFRACTION | 1.95 | 29 | enzyme,polymerase,transferase | |
| 35 | 3Q8Q|1|T | Human DNA polymerase iota incorporating dATP opposite 8-oxo-guanine | X-RAY DIFFRACTION | 2.031 | 23 | double helix,structure | enzyme,polymerase,transferase |
| 36 | 3Q8R|1|T | Human DNA polymerase iota incorporating dGTP opposite 8-oxo-guanine | X-RAY DIFFRACTION | 2.45 | 12 | double helix,structure | enzyme,polymerase,transferase |
| 37 | 3Q8S|1|T | Human DNA polymerase iota incorporating dTTP opposite 8-oxo-guanine | X-RAY DIFFRACTION | 2.09 | 22 | enzyme,polymerase,transferase | |
| 38 | 2FLP|1|T+2FLP|1|P | Binary complex of the catalytic core of human DNA polymerase iota with DNA (template G) | X-RAY DIFFRACTION | 2.4 | 11 | double helix,structure | enzyme,polymerase,transferase |
| 39 | 3G6Y|1|T+3G6Y|1|P | Ternary complex of DNA Polymerase iota:DNA:dTTP with an abasic site at the templating position | X-RAY DIFFRACTION | 2.1 | 11 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 40 | 3G6X|1|T+3G6X|1|P | Ternary complex of DNA Polymerase iota:DNA:dGTP with an abasic site at the templating position | X-RAY DIFFRACTION | 2.08 | 11 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 41 | 2SSP|1|B+2SSP|1|A | LEUCINE-272-ALANINE URACIL-DNA GLYCOSYLASE BOUND TO ABASIC SITE-CONTAINING DNA | X-RAY DIFFRACTION | 2.25 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 42 | 1SSP|1|B+1SSP|1|A | WILD-TYPE URACIL-DNA GLYCOSYLASE BOUND TO URACIL-CONTAINING DNA | X-RAY DIFFRACTION | 1.9 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 43 | 3GXQ|1|D+3GXQ|1|C | Structure of ArtA and DNA complex | X-RAY DIFFRACTION | 2.35 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription |
| 44 | 2P0J|1|C+2P0J|1|D | Structure of restriction endonuclease BstYI bound to non-cognate DNA | X-RAY DIFFRACTION | 2.1 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 45 | 1E3O|1|A+1E3O|1|B | Crystal structure of Oct-1 POU dimer bound to MORE | X-RAY DIFFRACTION | 1.9 | 11 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 46 | 2XSD|1|A+2XSD|1|B | Crystal Structure of the dimeric Oct-6 (Pou3f1) POU domain bound to palindromic MORE DNA | X-RAY DIFFRACTION | 2.049 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 47 | 476D|1|A+476D|1|B | CALCIUM FORM OF B-DNA UNDECAMER GCGAATTCGCG | X-RAY DIFFRACTION | 1.3 | 11 | B-form double helix,double helix,structure | |
| 48 | 1A3Q|1|C+1A3Q|1|D | HUMAN NF-KAPPA-B P52 BOUND TO DNA | X-RAY DIFFRACTION | 2.1 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 49 | 1KU7|1|B+1KU7|1|C | Crystal Structure of Thermus aquatics RNA Polymerase SigmaA Subunit Region 4 Bound to-35 Element DNA | X-RAY DIFFRACTION | 2.4 | 11 | B-form double helix,double helix,structure | regulatory,transcription |
| 50 | 3L1Q|1|A+3L1Q|1|B | The crystal structure of the undecamer d(TGGCCTTAAGG) | X-RAY DIFFRACTION | 2.5 | 11 | NAKB_NA_annotation | NAKB_protein_annotation |
| 51 | 1ZAA|1|A+1ZAA|1|B | ZINC FINGER-DNA RECOGNITION: CRYSTAL STRUCTURE OF A ZIF268-DNA COMPLEX AT 2.1 ANGSTROMS | X-RAY DIFFRACTION | 2.1 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 52 | 1BC7|1|A+1BC7|1|B | SERUM RESPONSE FACTOR ACCESSORY PROTEIN 1A (SAP-1)/DNA COMPLEX | X-RAY DIFFRACTION | 2.01 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 53 | 2Z3X|1|D+2Z3X|1|E | Structure of a Protein-DNA Complex Essential for DNA Protection in Spore of Bacillus Species | X-RAY DIFFRACTION | 2.1 | 11 | A-form double helix,double helix,structure | chromatin,structural |
| 54 | 3GOX|1|C+3GOX|1|D | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA | X-RAY DIFFRACTION | 1.5 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 55 | 3FC3|1|D | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I | X-RAY DIFFRACTION | 1.75 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 56 | 3Q8K|1|E | Crystal Structure of Human Flap Endonuclease FEN1 (WT) in complex with product 5'-flap DNA, SM3+, and K+ | X-RAY DIFFRACTION | 2.2001 | 53 | enzyme,hydrolase,nuclease | |
| 57 | 3MQY|1|D+3MQY|1|F+3MQY|1|C+3MQY|1|E | SgrAI with cleaved DNA and Magnesium bound | X-RAY DIFFRACTION | 2 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 58 | 1NFK|1|C+1NFK|1|D | STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER | X-RAY DIFFRACTION | 2.3 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 59 | 3KET|1|B+3KET|1|C | Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae bound to a palindromic operator | X-RAY DIFFRACTION | 2.4 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 60 | 2X6V|1|C+2X6V|1|D | Crystal structure of human TBX5 in the DNA-bound and DNA-free form | X-RAY DIFFRACTION | 2.2 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 61 | 1A1F|1|B+1A1F|1|C | DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) | X-RAY DIFFRACTION | 2.1 | 11 | double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 62 | 1A1K|1|B+1A1K|1|C | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) | X-RAY DIFFRACTION | 1.9 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 63 | 1JK2|1|B+1JK2|1|C | Zif268 D20A mutant bound to the GCT DNA site | X-RAY DIFFRACTION | 1.65 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 64 | 1A1G|1|B+1A1G|1|C | DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) | X-RAY DIFFRACTION | 1.9 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 65 | 1A1L|1|B+1A1L|1|C | ZIF268 ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-RAY DIFFRACTION | 2.3 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 66 | 1AAY|1|B+1AAY|1|C | ZIF268 ZINC FINGER-DNA COMPLEX | X-RAY DIFFRACTION | 1.6 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 67 | 1JK1|1|B+1JK1|1|C | Zif268 D20A Mutant Bound to WT DNA Site | X-RAY DIFFRACTION | 1.9 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 68 | 1A1H|1|B+1A1H|1|C | QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-RAY DIFFRACTION | 1.6 | 11 | double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 69 | 1A1J|1|B+1A1J|1|C | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) | X-RAY DIFFRACTION | 2 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 70 | 1A1I|1|B+1A1I|1|C | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-RAY DIFFRACTION | 1.6 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 71 | 1BSS|1|C+1BSS|1|D | ECORV-T93A/DNA/CA2+ | X-RAY DIFFRACTION | 2.15 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 72 | 1RV5|1|C+1RV5|1|D | COMPLEX OF ECORV ENDONUCLEASE WITH D(AAAGAT)/D(ATCTT) | X-RAY DIFFRACTION | 2.1 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 73 | 1BSU|1|D+1BSU|1|C | STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE | X-RAY DIFFRACTION | 2 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 74 | 1BUA|1|C+1BUA|1|D | STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE | X-RAY DIFFRACTION | 2.15 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 75 | 1RVA|1|C+1RVA|1|D | MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 2 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 76 | 1RVB|1|C+1RVB|1|D | MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 2.1 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 77 | 1AZ0|1|C+1AZ0|1|D | ECORV ENDONUCLEASE/DNA COMPLEX | X-RAY DIFFRACTION | 2 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 78 | 2B0D|1|C+2B0D|1|D | EcoRV Restriction Endonuclease/GAATTC/Ca2+ | X-RAY DIFFRACTION | 2 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 79 | 2B0E|1|C+2B0E|1|D | EcoRV Restriction Endonuclease/GAAUTC/Ca2+ | X-RAY DIFFRACTION | 1.9 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 80 | 1B95|1|C+1B95|1|D | ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP | X-RAY DIFFRACTION | 2.05 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 81 | 1B96|1|C+1B96|1|D | ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP | X-RAY DIFFRACTION | 2.3 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 82 | 1B94|1|C+1B94|1|D | RESTRICTION ENDONUCLEASE ECORV WITH CALCIUM | X-RAY DIFFRACTION | 1.9 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 83 | 1B97|1|C+1B97|1|D | ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP | X-RAY DIFFRACTION | 1.9 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 84 | 1SUZ|1|C+1SUZ|1|D | The structure of K92A EcoRV bound to cognate DNA and Mg2+ | X-RAY DIFFRACTION | 1.8 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 85 | 1SX8|1|C+1SX8|1|D | EcoRV bound to cognate DNA and Mn2+ | X-RAY DIFFRACTION | 2.15 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 86 | 1EON|1|C+1EON|1|D | ECORV BOUND TO 3'-S-PHOSPHOROTHIOLATE DNA AND CA2+ | X-RAY DIFFRACTION | 1.6 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 87 | 1EO3|1|C+1EO3|1|D | INHIBITION OF ECORV ENDONUCLEASE BY DEOXYRIBO-3'-S-PHOSPHOROTHIOLATES: A HIGH RESOLUTION X-RAY CRYSTALLOGRAPHIC STUDY | X-RAY DIFFRACTION | 2 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 88 | 1BGB|1|C+1BGB|1|D | ECORV ENDONUCLEASE COMPLEX WITH 5'-CGGGATATCCC DNA | X-RAY DIFFRACTION | 2 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 89 | 2GE5|1|C+2GE5|1|D | EcoRV Restriction Endonuclease C-terminal deletion mutant/GATATC/Ca2+ | X-RAY DIFFRACTION | 2.4 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 90 | 1RRS|1|B+1RRS|1|C | MutY adenine glycosylase in complex with DNA containing an abasic site | X-RAY DIFFRACTION | 2.4 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 91 | 3G0Q|1|B+3G0Q|1|C | Crystal Structure of MutY bound to its inhibitor DNA | X-RAY DIFFRACTION | 2.2 | 11 | double helix,structure | enzyme,hydrolase |
| 92 | 1VRL|1|B+1VRL|1|C | MutY adenine glycosylase in complex with DNA and soaked adenine free base | X-RAY DIFFRACTION | 2.5 | 11 | enzyme,hydrolase | |
| 93 | 1RRQ|1|B+1RRQ|1|C | MutY adenine glycosylase in complex with DNA containing an A:oxoG pair | X-RAY DIFFRACTION | 2.22 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 94 | 1ORP|1|B+1ORP|1|C | Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Adenine Complex | X-RAY DIFFRACTION | 2.2 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 95 | 1ORN|1|B+1ORN|1|C | Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Guanine Complex | X-RAY DIFFRACTION | 1.7 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 96 | 1P59|1|B+1P59|1|C | Structure of a non-covalent Endonuclease III-DNA Complex | X-RAY DIFFRACTION | 2.5 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 97 | 1TEZ|1|I+1TEZ|1|J | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-RAY DIFFRACTION | 1.8 | 11 | enzyme,lyase | |
| 98 | 1TEZ|1|K+1TEZ|1|L | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-RAY DIFFRACTION | 1.8 | 11 | enzyme,lyase |
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