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Equivalence class DNA_2.5_33614.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
11MUS|1|B+ 1MUS|1|C (rep)DNA transferred strand, DNA non-transferred strandcrystal structure of Tn5 transposase complexed with resolved outside end DNAX-ray diffraction1.92002-09-27
23JXB|1|A+ 3JXB|1|B5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*A)-3', 5'-D(*TP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3'Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9CX-ray diffraction1.672010-01-19
32R1J|1|A+ 2R1J|1|B5'-D(*DTP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DG)-3', 5'-D(*DCP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DA)-3'Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9TX-ray diffraction1.532008-04-29
43JXC|1|A+ 3JXC|1|B5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3'Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+X-ray diffraction1.92010-01-19
51MUH|1|B+ 1MUH|1|CDNA TRANSFERRED STRAND, DNA NON-TRANSFERRED STRANDCRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH TRANSPOSON END DNAX-ray diffraction2.32002-09-27
63JXD|1|A+ 3JXD|1|B5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3'Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+X-ray diffraction2.12010-01-19
72HAN|1|C+ 2HAN|1|D5'-D(*CP*AP*AP*GP*GP*GP*TP*TP*CP*AP*AP*TP*GP*CP*AP*CP*TP*TP*GP*T)-3', 5'-D(*GP*AP*CP*AP*AP*GP*TP*GP*CP*AP*TP*TP*GP*AP*AP*CP*CP*CP*TP*T)-3'Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoterX-ray diffraction1.952007-05-22
83MGV|1|F+ 3MGV|1|H+ 3MGV|1|E+ 3MGV|1|GDNA (5'-D(*CP*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3')Cre recombinase-DNA transition stateX-ray diffraction2.292010-05-26
93MGV|1|K+ 3MGV|1|M+ 3MGV|1|I+ 3MGV|1|LDNA (5'-D(*CP*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3')Cre recombinase-DNA transition stateX-ray diffraction2.292010-05-26
102VY1|1|W5'-D(*TP*TP*AP*CP*GP*GP*AP*CP*CP*AP *CP*TP*GP*GP*TP*CP*CP*TP*TP*CP)-3'Arabidopsis thalianaStructure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AP1 promoterX-ray diffraction2.1042008-09-23
111ZG5|1|C+ 1ZG5|1|D5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-ray diffraction2.32005-11-22
121ZG5|1|G+ 1ZG5|1|H5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-ray diffraction2.32005-11-22
132VY2|1|W5'-D(*AP*TP*TP*TP*AP*AP*TP*CP*CP*AP *AP*TP*GP*GP*TP*TP*AP*CP*AP*A)-3'Arabidopsis thalianaStructure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AG-I promoterX-ray diffraction2.32008-09-23
141GA5|1|C+ 1GA5|1|D5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*(5IT)P*G)-3'CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-ray diffraction2.42001-11-16
151GA5|1|G+ 1GA5|1|H5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*(5IT)P*G)-3'CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-ray diffraction2.42001-11-16
161PUF|1|D+ 1PUF|1|E5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*AP*CP*GP*CP*T)-3', 5'-D(*TP*AP*GP*CP*GP*TP*CP*GP*TP*AP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3'Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNAX-ray diffraction1.92003-09-02
173KHL|1|E+ 3KHL|1|D5'-D(*CP*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*AP*(DDG))-3'Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-ray diffraction2.12010-02-16
183KHL|1|J+ 3KHL|1|H5'-D(*CP*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*AP*(DDG))-3'Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-ray diffraction2.12010-02-16
191A6Y|1|C+ 1A6Y|1|DDNA (5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*(5IT)P*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3')REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEXX-ray diffraction2.31998-10-21
201ZG1|1|C+ 1ZG1|1|D5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3'NarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-ray diffraction2.32005-11-22
211ZG1|1|G+ 1ZG1|1|H5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-ray diffraction2.32005-11-22
223C2I|1|B+ 3C2I|1|CDNA (5'-D(*DTP*DCP*DTP*DGP*DGP*DAP*DAP*(5CM)P*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DTP*DTP*DCP*DTP*DA)-3'), DNA (5'-D(*DAP*DTP*DAP*DGP*DAP*DAP*DGP*DAP*DAP*DTP*DTP*DCP*(5CM)P*DGP*DTP*DTP*DCP*DCP*DAP*DG)-3')The Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNFX-ray diffraction2.52008-05-13
233COQ|1|D+ 3COQ|1|EDNA (5'-D(*DAP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DAP*DGP*DTP*DCP*DCP*DTP*DCP*DCP*DGP*DG)-3'), DNA (5'-D(*DTP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DTP*DGP*DTP*DCP*DCP*DTP*DCP*DCP*DGP*DG)-3')synthetic constructStructural Basis for Dimerization in DNA Recognition by Gal4X-ray diffraction2.42008-07-01
241LE8|1|C+ 1LE8|1|D5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*AP*AP*AP*TP*TP*TP*AP*CP*AP*TP*CP*A)-3', 5'-D(*TP*TP*GP*AP*TP*GP*TP*AP*AP*AP*TP*TP*TP*TP*TP*AP*CP*AP*TP*G)-3'Crystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA ComplexX-ray diffraction2.32002-05-03
253ECP|1|B+ 3ECP|1|CDNA transferred strand, DNA non-transferred strandCrystal Structure Of Tn5 Transposase Complexed With 5' Phosphorylated Transposon End DNAX-ray diffraction2.52008-10-21
261L3L|1|E+ 1L3L|1|G5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3'Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-ray diffraction1.662002-07-03
271L3L|1|F+ 1L3L|1|H5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3'Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-ray diffraction1.662002-07-03
281JE8|1|C+ 1JE8|1|D5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-ray diffraction2.122002-09-27
291JE8|1|G+ 1JE8|1|H5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-ray diffraction2.122002-09-27
301JNM|1|C+ 1JNM|1|D5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3'Crystal Structure of the Jun/CRE ComplexX-ray diffraction2.22003-06-03
311B72|1|D+ 1B72|1|EDNA (5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*GP*AP*TP*CP*GP*GP*CP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*GP*CP*CP*GP*AP*TP*CP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3')PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEXX-ray diffraction2.351999-02-19
322RAM|1|C+ 2RAM|1|DDNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*(5IU)P*(5IU)P*CP*CP*AP*GP*CP*CP*G)-3')A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMERX-ray diffraction2.41998-05-27
331RPE|1|A+ 1RPE|1|BDNA (5'-D(*AP*CP*AP*AP*AP*CP*AP*AP*GP*AP*TP*AP*CP*AP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*TP*GP*TP*AP*TP*CP*TP*TP*GP*T P*TP*TP*G)-3')THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-ray diffraction2.51994-01-31
343CRO|1|A+ 3CRO|1|BDNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3')THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-ray diffraction2.51991-10-15
352OR1|1|A+ 2OR1|1|BDNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3')RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTIONX-ray diffraction2.51989-09-05
361PER|1|A+ 1PER|1|BDNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*GP*TP*TP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*AP*AP*CP*TP*GP*T P*AP*CP*T)-3')THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITESX-ray diffraction2.51994-01-31
371HWT|1|A+ 1HWT|1|BDNA (5'-D(*GP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*C)-3')STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-ray diffraction2.51999-11-10
382HAP|1|A+ 2HAP|1|BDNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*T)-3')STRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN HAVE DIRECT ALLOSTERIC EFFECTS ON TRANSCRIPTIONAL ACTIVATIONX-ray diffraction2.51999-11-10
391UBD|1|A+ 1UBD|1|BDNA (5'-D(*AP*GP*GP*GP*TP*CP*TP*CP*CP*AP*TP*TP*TP*TP*GP*AP*A P*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*TP*TP*CP*AP*AP*AP*AP*TP*GP*GP*AP*GP*AP*C P*CP*CP*T)-3')CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENTX-ray diffraction2.51996-12-23
401HWT|1|E+ 1HWT|1|FDNA (5'-D(*GP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*C)-3')STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-ray diffraction2.51999-11-10

Release history

Release0.10.20.30.40.50.60.70.80.90.100.110.120.130.140.150.160.170.18
Date2011-02-052011-02-122011-02-162011-02-192011-02-262011-03-052011-03-122011-03-192011-03-262011-04-022011-04-092011-04-112011-04-162011-04-232011-04-302011-05-072011-05-142011-05-21

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
1
3MGV|1|F+3MGV|1|H+3MGV|1|E+3MGV|1|G		Cre recombinase-DNA transition stateX-RAY DIFFRACTION2.2920enzyme,recombinase
2
3MGV|1|K+3MGV|1|M+3MGV|1|I+3MGV|1|L		Cre recombinase-DNA transition stateX-RAY DIFFRACTION2.2920enzyme,recombinase
3
2VY2|1|W		Structure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AG-I promoterX-RAY DIFFRACTION2.320B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
4
1HWT|1|E+1HWT|1|F		STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-RAY DIFFRACTION2.520B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
5
2HAP|1|A+2HAP|1|B		STRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN HAVE DIRECT ALLOSTERIC EFFECTS ON TRANSCRIPTIONAL ACTIVATIONX-RAY DIFFRACTION2.520double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
6
1HWT|1|A+1HWT|1|B		STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-RAY DIFFRACTION2.520B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
7
1PUF|1|D+1PUF|1|E		Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNAX-RAY DIFFRACTION1.920B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
8
2VY1|1|W		Structure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AP1 promoterX-RAY DIFFRACTION2.10420B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
9
2RAM|1|C+2RAM|1|D		A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMERX-RAY DIFFRACTION2.420B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
10
3C2I|1|B+3C2I|1|C		The Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNFX-RAY DIFFRACTION2.520B-form double helix,double helix,structurechromatin,structural
11
1JNM|1|C+1JNM|1|D		Crystal Structure of the Jun/CRE ComplexX-RAY DIFFRACTION2.220B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
12
1UBD|1|A+1UBD|1|B		CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENTX-RAY DIFFRACTION2.520B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
13
1B72|1|D+1B72|1|E		PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEXX-RAY DIFFRACTION2.3520B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
14
3COQ|1|D+3COQ|1|E		Structural Basis for Dimerization in DNA Recognition by Gal4X-RAY DIFFRACTION2.420B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
15
1A6Y|1|C+1A6Y|1|D		REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEXX-RAY DIFFRACTION2.320B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
16
1GA5|1|C+1GA5|1|D		CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-RAY DIFFRACTION2.420B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
17
1GA5|1|G+1GA5|1|H		CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-RAY DIFFRACTION2.420B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
18
2HAN|1|C+2HAN|1|D		Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoterX-RAY DIFFRACTION1.9520B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
19
1RPE|1|A+1RPE|1|B		THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-RAY DIFFRACTION2.520B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
20
3CRO|1|A+3CRO|1|B		THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-RAY DIFFRACTION2.520B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
21
2OR1|1|A+2OR1|1|B		RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTIONX-RAY DIFFRACTION2.520B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
22
1PER|1|A+1PER|1|B		THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITESX-RAY DIFFRACTION2.520B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
23
3JXB|1|A+3JXB|1|B		Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9CX-RAY DIFFRACTION1.6720B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
24
3JXD|1|A+3JXD|1|B		Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+X-RAY DIFFRACTION2.120B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
25
3JXC|1|A+3JXC|1|B		Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+X-RAY DIFFRACTION1.920B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
26
2R1J|1|A+2R1J|1|B		Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9TX-RAY DIFFRACTION1.5320B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
27
1L3L|1|F+1L3L|1|H		Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-RAY DIFFRACTION1.6620B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
28
1L3L|1|E+1L3L|1|G		Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-RAY DIFFRACTION1.6620B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
29
1ZG5|1|G+1ZG5|1|H		NarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.320B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
30
1ZG5|1|C+1ZG5|1|D		NarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.320B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
31
1ZG1|1|G+1ZG1|1|H		NarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.320B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
32
1ZG1|1|C+1ZG1|1|D		NarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.320B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
33
1JE8|1|G+1JE8|1|H		Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-RAY DIFFRACTION2.1220B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
34
1JE8|1|C+1JE8|1|D		Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-RAY DIFFRACTION2.1220B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
35
1LE8|1|C+1LE8|1|D		Crystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA ComplexX-RAY DIFFRACTION2.320B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
36
3KHL|1|E+3KHL|1|D		Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-RAY DIFFRACTION2.120enzyme,polymerase,transferase
37
3KHL|1|J+3KHL|1|H		Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-RAY DIFFRACTION2.120enzyme,polymerase,transferase
38
1MUH|1|B+1MUH|1|C		CRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH TRANSPOSON END DNAX-RAY DIFFRACTION2.320enzyme,hydrolase,nuclease,recombinase
39
1MUS|1|B+1MUS|1|C		crystal structure of Tn5 transposase complexed with resolved outside end DNAX-RAY DIFFRACTION1.920enzyme,hydrolase,nuclease,recombinase
40
3ECP|1|B+3ECP|1|C		Crystal Structure Of Tn5 Transposase Complexed With 5' Phosphorylated Transposon End DNAX-RAY DIFFRACTION2.520enzyme,hydrolase,nuclease,recombinase

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