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Equivalence class DNA_2.5_10786.9 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13O1M|1|B+ 3O1M|1|C (rep)DNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(ME6)P*AP*CP*CP*GP*T)-3'), DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.752010-11-17
23MR2|1|T+ 3MR2|1|PDNA (5'-D(*T*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*TP*CP*AP*T)-3')Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm)X-ray diffraction1.832010-06-30
33O1P|1|B+ 3O1P|1|CDNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(EDA)P*AP*CP*CP*GP*T)-3'), DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.512010-11-17
43BKZ|1|B+ 3BKZ|1|CDNA (5'-D(*DTP*DAP*DGP*DGP*DTP*DAP*DAP*DCP*DAP*DTP*DCP*DGP*DT)-3'), DNA (5'-D(*DAP*DAP*DCP*DGP*DAP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3')X-ray structure of E coli AlkB crosslinked to dsDNA in the active siteX-ray diffraction1.652008-04-22
53O1T|1|C+ 3O1T|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDU)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.482010-11-17
63BIE|1|C+ 3BIE|1|BDNA (5'-D(*DAP*DAP*DCP*DGP*DGP*DTP*DTP*DTP*DTP*DAP*DCP*DCP*DT)-3'), DNA (5'-D(P*DAP*DGP*DGP*DTP*DAP*DAP*(MA7)P*DAP*DCP*DCP*DGP*DT)-3')X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KGX-ray diffraction1.682008-04-22
73I0W|1|B+ 3I0W|1|C5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*A)-3'Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoGX-ray diffraction1.732009-09-29
83I0X|1|C+ 3I0X|1|D5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*AP*TP*GP*GP*A)-3'Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing adenine opposite to 8-oxoGX-ray diffraction1.82009-09-29
91SXQ|1|C+ 1SXQ|1|E5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3'BGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-ray diffraction1.82004-06-22
101M5R|1|C+ 1M5R|1|E5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction1.82002-12-11
111SXQ|1|D+ 1SXQ|1|F5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3'BGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-ray diffraction1.82004-06-22
121M5R|1|D+ 1M5R|1|F5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction1.82002-12-11
133O1U|1|C+ 3O1U|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDV)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.542010-11-17
142HHW|1|C+ 2HHW|1|B5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-ray diffraction1.882006-12-12
152HHW|1|F+ 2HHW|1|E5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-ray diffraction1.882006-12-12
163O1O|1|B+ 3O1O|1|CDNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(MFT)P*AP*CP*CP*GP*T)-3'), DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.922010-11-17
173O1S|1|C+ 3O1S|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDQ)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.582010-11-17
183H8R|1|B+ 3H8R|1|C5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*(6MA)P*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*TP*AP*TP*AP*AP*TP*AP*CP*A)-3'synthetic constructStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-ray diffraction1.772010-03-31
193O1R|1|C+ 3O1R|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDK)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.772010-11-17
202HVI|1|C+ 2HVI|1|B5'-D(*C*AP*TP*GP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:G pair in the polymerase active site (0 position)X-ray diffraction1.982006-12-12
212HVI|1|F+ 2HVI|1|E5'-D(*C*AP*TP*GP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:G pair in the polymerase active site (0 position)X-ray diffraction1.982006-12-12
223BTX|1|B+ 3BTX|1|CDNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3')X-ray structure of human ABH2 bound to dsDNA through active site cross-linkingX-ray diffraction22008-04-22
232UYC|1|C+ 2UYC|1|D5'-D(*TP*GP*GP*AP*TP*GP*5CMP*GP*CP*TP *GP*AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3'synthetic constructHhaI DNA methyltransferase R163N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-ray diffraction22008-05-27
243OHA|1|T+ 3OHA|1|P5'-D(P*TP*(8OG)P*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3'Yeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesionX-ray diffraction22010-12-22
253L2C|1|B+ 3L2C|1|CFOXO consensus binding sequence, plus strand, FOXO consensus binding sequence, minus strandCrystal Structure of the DNA Binding Domain of FOXO4 Bound to DNAX-ray diffraction1.8682009-12-29
263O1V|1|C+ 3O1V|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDJ)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.92010-11-17
272UZ4|1|C+ 2UZ4|1|D5'-D(*TP*GP*GP*AP*TP*GP*5CMP*GP*CP*TP*GP *AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3'HhaI DNA methyltransferase R165N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-ray diffraction2.12008-06-03
283H8X|1|B+ 3H8X|1|C5'-D(*CP*TP*GP*TP*(ME6)P*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*AP*AP*TP*AP*AP*GP*AP*CP*A)-3'synthetic constructStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-ray diffraction1.952010-03-31
292ZO1|1|D+ 2ZO1|1|EDNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3'), DNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3')Mouse NP95 SRA domain DNA specific complex 2X-ray diffraction1.962008-09-09
303QZ8|1|P5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*AP*GP*G)-3'TT-4 ternary complex of Dpo4X-ray diffraction1.9992011-04-06
313H8O|1|B+ 3H8O|1|C5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*(MA7)P*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*TP*AP*TP*AP*AP*TP*AP*CP*A)-3'synthetic constructStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-ray diffraction22010-03-31
321PUY|1|A5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3'1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-ray diffraction1.52003-10-14
331PUY|1|B5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3'1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-ray diffraction1.52003-10-14
343RAX|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3')Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesionX-ray diffraction1.8912011-06-15
353RAX|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3')Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesionX-ray diffraction1.8912011-06-15
363BI3|1|B+ 3BI3|1|CDNA (5'-D(*TP*AP*GP*GP*TP*AP*AP*(MA7)P*AP*(2YR)P*CP*GP*T)-3'), DNA (5'-D(*DAP*DAP*DCP*DGP*DGP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3')X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactorsX-ray diffraction1.92008-04-22
371OE5|1|F+ 1OE5|1|E5'-D(*CP*3DRP*GP*GP*AP*CP*TP*3DRP*AP*CP*GP*GP*GP)-3', 5'-D(*CP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*G)-3'Xenopus SMUG1, an anti-mutator uracil-DNA GlycosylaseX-ray diffraction2.32003-07-11
383E6C|1|A+ 3E6C|1|BDNA (5'-D(P*DGP*DGP*DCP*DAP*DTP*DGP*DTP*DTP*DAP*DAP*DTP*DGP*DC)-3'), DNA (5'-D(P*DGP*DCP*DAP*DTP*DTP*DAP*DAP*DCP*DAP*DTP*DGP*DCP*DC)-3')CprK OCPA DNA ComplexX-ray diffraction1.82008-09-30
394BDP|1|T+ 4BDP|1|PDNA (5'-D(*TP*AP*TP*TP*GP*CP*AP*TP*GP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*CP*AP*TP*GP*CP*AP*A)-3')CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUESX-ray diffraction1.81999-01-13
401YO5|1|A+ 1YO5|1|BEnhancer site of Prostate Specific Antigen Promoter RegionAnalysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory siteX-ray diffraction22005-05-17
412IRF|1|D+ 2IRF|1|CDNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3')CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-ray diffraction2.21999-10-08
422IRF|1|E+ 2IRF|1|BDNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3')CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-ray diffraction2.21999-10-08
432IRF|1|F+ 2IRF|1|ADNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3')CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-ray diffraction2.21999-10-08
441Y8Z|1|C+ 1Y8Z|1|D5'-D(*GP*AP*TP*AP*CP*TP*(5HU)P*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*G)-3'alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a HMU base at 1.9 A resolutionX-ray diffraction1.92005-08-30
453EYZ|1|C+ 3EYZ|1|B5'-D(*DAP*DTP*DGP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DGP*DA)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DGP*DC)-3'Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form)X-ray diffraction2.12009-11-10
462OXV|1|CDNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')Structure of the A138T promiscuous mutant of the EcoRI restriction endonuclease bound to its cognate recognition site.X-ray diffraction1.952007-10-23
471GD2|1|A+ 1GD2|1|BDNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3')CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-ray diffraction22000-10-02
481GD2|1|C+ 1GD2|1|DDNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3')CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-ray diffraction22000-10-02
492ZO0|1|D+ 2ZO0|1|EDNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3'), DNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3')mouse NP95 SRA domain DNA specific complex 1X-ray diffraction2.192008-09-09
503RAQ|1|DDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3')Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesionX-ray diffraction2.252011-06-15
513RAQ|1|HDNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3')Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesionX-ray diffraction2.252011-06-15
522HHX|1|C+ 2HHX|1|B5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*G)-3'O6-methyl-guanine in the polymerase template preinsertion siteX-ray diffraction2.262006-12-12
531WTE|1|X+ 1WTE|1|Y5'-D(*AP*CP*CP*GP*GP*GP*CP*CP*CP*TP*GP*CP*C)-3', 5'-D(*GP*GP*CP*AP*GP*GP*GP*CP*CP*CP*GP*GP*T)-3'Crystal structure of type II restrcition endonuclease, EcoO109I complexed with cognate DNAX-ray diffraction1.92004-12-14
541J1V|1|B+ 1J1V|1|C5'-D(*TP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'Crystal structure of DnaA domainIV complexed with DnaAbox DNAX-ray diffraction2.12003-04-22
553PVP|1|CDNA (5'-D(*CP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*AP*C)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-ray diffraction2.32011-05-25
563PVP|1|DDNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*G)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-ray diffraction2.32011-05-25
573PVP|1|EDNA (5'-D(*CP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*AP*C)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-ray diffraction2.32011-05-25
583PVP|1|FDNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*G)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-ray diffraction2.32011-05-25
593QZ7|1|P5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*GP*GP*G)-3'T-3 ternary complex of Dpo4X-ray diffraction1.9982011-04-06
603GV5|1|F+ 3GV5|1|E5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3'Human DNA polymerase iota in complex with T template DNA and incoming ddADPX-ray diffraction22009-06-02
613GV5|1|T+ 3GV5|1|P5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3'Human DNA polymerase iota in complex with T template DNA and incoming ddADPX-ray diffraction22009-06-02
623A46|1|C+ 3A46|1|DDNACrystal structure of MvNei1/THF complexX-ray diffraction2.22009-07-21
633A46|1|E+ 3A46|1|FDNACrystal structure of MvNei1/THF complexX-ray diffraction2.22009-07-21
643G0R|1|G+ 3G0R|1|K5'-D(*GP*CP*TP*GP*CP*GP*CP*AP*GP*GP*GP*CP*G)-3', 5'-D(*CP*CP*CP*TP*GP*UP*GP*CP*AP*GP*C)-3'Complex of Mth0212 and an 8bp dsDNA with distorted endsX-ray diffraction2.42010-03-09
653BTY|1|B+ 3BTY|1|CDNA (5'-D(*DCP*DTP*DGP*DTP*DAP*DTP*(MA7)P*DAP*DCP*DTP*DGP*DCP*DG)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DGP*DTP*DTP*DAP*DTP*DAP*DCP*DA)-3')Crystal structure of human ABH2 bound to dsDNA containing 1meA through cross-linking away from active siteX-ray diffraction2.352008-04-22
663PR5|1|PDNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3')Dpo4 Y12A mutant incorporating ADP opposite template dTX-ray diffraction2.42011-02-23
671PP7|1|E+ 1PP7|1|FFERREDOXIN INRCrystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin InrX-ray diffraction2.452003-11-18
681U8B|1|E+ 1U8B|1|D5'-D(*AP*AP*TP*CP*TP*TP*GP*CP*GP*CP*TP*TP*T)-3', 5'-D(P*AP*AP*AP*GP*CP*GP*CP*AP*AP*GP*AP*T)-3'Crystal structure of the methylated N-ADA/DNA complexX-ray diffraction2.12005-10-11
691YQM|1|B+ 1YQM|1|C5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(7GU)P*GP*TP*CP*TP*AP*C)-3'Catalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNAX-ray diffraction2.52005-04-05
703PVV|1|EDNA (5'-D(*CP*GP*TP*TP*GP*TP*CP*CP*AP*CP*AP*AP*C)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-ray diffraction22011-05-25
713PVV|1|DDNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*CP*AP*AP*CP*G)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-ray diffraction22011-05-25
723PVV|1|FDNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*CP*AP*AP*CP*G)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-ray diffraction22011-05-25
733PVV|1|CDNA (5'-D(*CP*GP*TP*TP*GP*TP*CP*CP*AP*CP*AP*AP*C)-3')Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-ray diffraction22011-05-25
743PO5|1|CDNA (5'-D(P*(3DR)P*TP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3')Structure of a mutant of the large fragment of DNA polymerase I from Thermus Auqaticus in complex with an abasic site and ddATPX-ray diffraction2.392011-06-15
751Y6F|1|C+ 1Y6F|1|D5'-D(*GP*AP*TP*AP*CP*TP*(3DR)P*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic siteX-ray diffraction2.42005-08-30
763GFI|1|D+ 3GFI|1|E5'-D(*TP*AP*AP*CP*AP*AP*TP*AP*GP*CP*AP*AP*A)-3', 5'-D(*TP*TP*GP*CP*TP*AP*TP*TP*GP*T)-3'Crystal structure of ST1710 complexed with its promoter DNAX-ray diffraction2.12009-08-25
772FCC|1|C+ 2FCC|1|DDNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3')Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-ray diffraction2.32006-10-03
782FCC|1|E+ 2FCC|1|FDNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3')Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-ray diffraction2.32006-10-03
792HVH|1|C+ 2HVH|1|B5'-D(*CP*A*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:O6MeG pair in the polymerase active site (0 position)X-ray diffraction2.4922006-12-12
802HVH|1|F+ 2HVH|1|E5'-D(*CP*A*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:O6MeG pair in the polymerase active site (0 position)X-ray diffraction2.4922006-12-12
813BU0|1|B+ 3BU0|1|CDNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3')crystal structure of human ABH2 cross-linked to dsDNA with cofactorsX-ray diffraction2.52008-04-22
821SXP|1|C+ 1SXP|1|D5'-D(*A*AP*TP*AP*CP*TP*AP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*T)-3'BGT in complex with a 13mer DNA containing a central A:G mismatchX-ray diffraction2.52004-06-22
831IXY|1|C+ 1IXY|1|E5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction2.52002-12-04
841IXY|1|D+ 1IXY|1|F5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction2.52002-12-04
853QI5|1|CDNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDC)P*TP*TP*GP*CP*CP*T)-3')Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-ray diffraction2.22011-03-09
863QI5|1|DDNA (5'-D(*GP*GP*CP*AP*AP*GP*CP*AP*TP*GP*TP*CP*A)-3')Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-ray diffraction2.22011-03-09
873QI5|1|EDNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDC)P*TP*TP*GP*CP*CP*T)-3')Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-ray diffraction2.22011-03-09
883QI5|1|FDNA (5'-D(*GP*GP*CP*AP*AP*GP*CP*AP*TP*GP*TP*CP*A)-3')Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-ray diffraction2.22011-03-09
891K3X|1|B+ 1K3X|1|C5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNAX-ray diffraction1.252002-10-04
901K3W|1|B+ 1K3W|1|C5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNAX-ray diffraction1.422002-10-04
911LLM|1|A+ 1LLM|1|B5'-D(*TP*CP*CP*CP*AP*CP*GP*CP*GP*TP*GP*GP*G)-3'Crystal Structure of a Zif23-GCN4 Chimera Bound to DNAX-ray diffraction1.52003-09-30
921QUM|1|D+ 1QUM|1|C+ 1QUM|1|B5'-D(*CP*GP*TP*CP*C)-3', 5'-D(*(3DR)P*CP*GP*AP*CP*GP*A)-3', 5'-D(*TP*CP*GP*TP*CP*GP*GP*GP*GP*AP*CP*G)-3'CRYSTAL STRUCTURE OF ESCHERICHIA COLI ENDONUCLEASE IV IN COMPLEX WITH DAMAGED DNAX-ray diffraction1.551999-08-31
933PVI|1|C+ 3PVI|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3')D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSISX-ray diffraction1.591998-10-14
941DC1|1|C+ 1DC1|1|WDNA (5'-D(*T*AP*TP*AP*CP*TP*CP*GP*AP*GP*TP*AP*T)-3')RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLDX-ray diffraction1.72001-02-21
952PVI|1|C+ 2PVI|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*(C38)P*TP*GP*GP*TP*C)-3')PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNAX-ray diffraction1.761999-12-20
961EYU|1|C+ 1EYU|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3')HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6X-ray diffraction1.782000-07-21
971CL8|1|BDNA (5'-D(*TP*CP*GP*CP*GP*AP*(PRN)P*TP*TP*CP*GP*CP*G)-3')A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P)X-ray diffraction1.81999-05-19
981A73|1|C+ 1A73|1|E+ 1A73|1|D+ 1A73|1|FDNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3')INTRON-ENCODED ENDONUCLEASE I-PPOI COMPLEXED WITH DNAX-ray diffraction1.81998-10-14
991CKQ|1|BDNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEXX-ray diffraction1.851999-04-26
1002C7Q|1|C+ 2C7Q|1|D5'-D(*T*GP*GP*(2PR)*GP*GP*(5CM)*GP*CP*TP*GP* AP*C)-3', 5'-D(*T*GP*TP*CP*AP*GP*CP*GP*CP*CP*GP*CP*C)-3'synthetic constructHhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine outside the recognition sequence (paired with G) and SAHX-ray diffraction1.852005-12-14
1012C7O|1|C+ 2C7O|1|D5'-D(*T*GP*GP*AP*TP*GP*(5CM)*GP*CP*TP*GP*AP *C)-3', 5'-D(*T*GP*TP*CP*AP*(2PR)*CP*GP*CP*AP*TP*CP *C)-3'synthetic constructHhaI DNA methyltransferase complex with 13mer oligonucleotide containing 2-aminopurine adjacent to the target base (PCGC:GMGC) and SAHX-ray diffraction1.92005-12-14
1022HR1|1|D+ 2HR1|1|C5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcyX-ray diffraction1.962006-09-19
1031DUX|1|A+ 1DUX|1|BDNA (5'-D(*TP*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*T)-3'), DNA (5'-D(*AP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*A)-3')ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-ray diffraction2.12000-04-17
1041DUX|1|D+ 1DUX|1|EDNA (5'-D(*TP*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*T)-3'), DNA (5'-D(*AP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*A)-3')ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-ray diffraction2.12000-04-17
1051K82|1|E+ 1K82|1|I5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.12002-06-14
1061K82|1|F+ 1K82|1|J5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.12002-06-14
1071K82|1|G+ 1K82|1|K5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.12002-06-14
1081K82|1|H+ 1K82|1|L5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.12002-06-14
1091MEY|1|A+ 1MEY|1|B+ 1MEY|1|D+ 1MEY|1|EDNA (5'-D(*AP*TP*GP*AP*GP*GP*CP*AP*GP*AP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*CP*TP*GP*CP*CP*TP*(C38)P*A)-3')CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNAX-ray diffraction2.21997-03-12
1101SKM|1|C+ 1SKM|1|D5'-D(*TP*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3', 5'-D(*T*GP*TP*CP*AP*GP*(HCX)P*GP*CP*AP*TP*GP*G)-3'HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target siteX-ray diffraction2.22004-08-24
1111T7P|1|T+ 1T7P|1|PDNA (5'-D(P*CP*CP*TP*TP*GP*GP*CP*AP*CP*TP*GP*GP*C)-3'), DNA (5'-D(P*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*2DA)-3')T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXINX-ray diffraction2.21998-02-25
1121FJX|1|C+ 1FJX|1|DDNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3')STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCYX-ray diffraction2.262000-12-15
1131YF3|1|C+ 1YF3|1|D5'-D(*AP*CP*CP*AP*TP*GP*AP*TP*CP*TP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*AP*GP*AP*TP*CP*AP*TP*GP*G)-3'T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) ContactX-ray diffraction2.292005-05-17
1143KTU|1|B+ 3KTU|1|CDNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*AP*(FDG)P*GP*TP*CP*TP*AP*C)-3')synthetic constructStructure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNAX-ray diffraction2.32010-07-14
1152KTQ|1|D+ 2KTQ|1|BDNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3')OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUSX-ray diffraction2.31999-01-13
1161F4R|1|D+ 1F4R|1|EDNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDA)P*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNAX-ray diffraction2.42000-12-11
1171F6O|1|D+ 1F6O|1|EDNA (5'-D(*GP*AP*CP*AP*TP*GP*(YRR)P*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNAX-ray diffraction2.42000-12-11
1181ERI|1|BDNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGEX-ray diffraction2.51995-02-07
1194KTQ|1|C+ 4KTQ|1|BDNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3')BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNAX-ray diffraction2.51999-01-13
1201DIZ|1|C+ 1DIZ|1|DDNA (5'-D(*GP*AP*CP*AP*TP*GP*AP*(NRI)P*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')Escherichia coliCRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-ray diffraction2.52000-03-20
1213E54|1|C+ 3E54|1|E+ 3E54|1|D+ 3E54|1|FDNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(*DTP*DTP*DGP*DGP*DCP*DTP*DAP*DCP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(P*DGP*DGP*DTP*DAP*DGP*DCP*DCP*DAP*DA)-3'), DNA (5'-D(P*DGP*DAP*DGP*DAP*DGP*DTP*DCP*DAP*DG)-3')Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNAX-ray diffraction2.52008-12-30
1221F0O|1|C+ 1F0O|1|D(5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C-3')PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITEX-ray diffraction2.52000-11-06
1231DIZ|1|E+ 1DIZ|1|FDNA (5'-D(*GP*AP*CP*AP*TP*GP*AP*(NRI)P*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')Escherichia coliCRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-ray diffraction2.52000-03-20
1241QRH|1|M5'-(TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G*)-3'X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 AX-ray diffraction2.51999-06-23

Release history

Release0.22
Date2011-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
1
1Y8Z|1|C+1Y8Z|1|D		alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a HMU base at 1.9 A resolutionX-RAY DIFFRACTION1.913enzyme,transferase
2
2HHX|1|C+2HHX|1|B		O6-methyl-guanine in the polymerase template preinsertion siteX-RAY DIFFRACTION2.2613B-form double helix,double helix,structureenzyme,polymerase,transferase
3
2HVH|1|C+2HVH|1|B		ddCTP:O6MeG pair in the polymerase active site (0 position)X-RAY DIFFRACTION2.49213B-form double helix,double helix,structureenzyme,polymerase,transferase
4
2HVH|1|F+2HVH|1|E		ddCTP:O6MeG pair in the polymerase active site (0 position)X-RAY DIFFRACTION2.49213B-form double helix,double helix,structureenzyme,polymerase,transferase
5
2HVI|1|C+2HVI|1|B		ddCTP:G pair in the polymerase active site (0 position)X-RAY DIFFRACTION1.9813B-form double helix,double helix,structureenzyme,polymerase,transferase
6
2HVI|1|F+2HVI|1|E		ddCTP:G pair in the polymerase active site (0 position)X-RAY DIFFRACTION1.9813B-form double helix,double helix,structureenzyme,polymerase,transferase
7
2HHW|1|C+2HHW|1|B		ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-RAY DIFFRACTION1.8813double helix,structureenzyme,polymerase,transferase
8
2HHW|1|F+2HHW|1|E		ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-RAY DIFFRACTION1.8813double helix,structureenzyme,polymerase,transferase
9
3MR2|1|T+3MR2|1|P		Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm)X-RAY DIFFRACTION1.8313B-form double helix,double helix,structureenzyme,polymerase,transferase
10
3H8O|1|B+3H8O|1|C		Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-RAY DIFFRACTION213enzyme,oxidoreductase
11
3BTY|1|B+3BTY|1|C		Crystal structure of human ABH2 bound to dsDNA containing 1meA through cross-linking away from active siteX-RAY DIFFRACTION2.3513enzyme,oxidoreductase
12
3BU0|1|B+3BU0|1|C		crystal structure of human ABH2 cross-linked to dsDNA with cofactorsX-RAY DIFFRACTION2.513enzyme,oxidoreductase
13
3H8R|1|B+3H8R|1|C		Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-RAY DIFFRACTION1.7713enzyme,oxidoreductase
14
3BTX|1|B+3BTX|1|C		X-ray structure of human ABH2 bound to dsDNA through active site cross-linkingX-RAY DIFFRACTION213enzyme,oxidoreductase
15
1F4R|1|D+1F4R|1|E		CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNAX-RAY DIFFRACTION2.413B-form double helix,double helix,structureenzyme,hydrolase
16
1F6O|1|D+1F6O|1|E		CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNAX-RAY DIFFRACTION2.413B-form double helix,double helix,structureenzyme,hydrolase
17
3KTU|1|B+3KTU|1|C		Structure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNAX-RAY DIFFRACTION2.313B-form double helix,double helix,structureenzyme,hydrolase
18
1YQM|1|B+1YQM|1|C		Catalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNAX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase
19
3QI5|1|C		Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-RAY DIFFRACTION2.232enzyme,hydrolase
20
3QI5|1|E		Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-RAY DIFFRACTION2.230enzyme,hydrolase
21
3QI5|1|D		Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-RAY DIFFRACTION2.230enzyme,hydrolase
22
3QI5|1|F		Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNAX-RAY DIFFRACTION2.229enzyme,hydrolase
23
1J1V|1|B+1J1V|1|C		Crystal structure of DnaA domainIV complexed with DnaAbox DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureDNA replication/repair,regulatory
24
3PVV|1|E		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-RAY DIFFRACTION232B-form double helix,double helix,structureDNA replication/repair,regulatory
25
3PVP|1|E		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-RAY DIFFRACTION2.318B-form double helix,double helix,structureDNA replication/repair,regulatory
26
3PVV|1|C		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-RAY DIFFRACTION223B-form double helix,double helix,structureDNA replication/repair,regulatory
27
3PVP|1|C		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-RAY DIFFRACTION2.321B-form double helix,double helix,structureDNA replication/repair,regulatory
28
1U8B|1|E+1U8B|1|D		Crystal structure of the methylated N-ADA/DNA complexX-RAY DIFFRACTION2.113B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription
29
1LLM|1|A+1LLM|1|B		Crystal Structure of a Zif23-GCN4 Chimera Bound to DNAX-RAY DIFFRACTION1.513B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
30
3E6C|1|A+3E6C|1|B		CprK OCPA DNA ComplexX-RAY DIFFRACTION1.813B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
31
3RAQ|1|H		Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesionX-RAY DIFFRACTION2.2523enzyme,polymerase,transferase
32
3RAX|1|H		Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesionX-RAY DIFFRACTION1.89135B-form double helix,double helix,structureenzyme,polymerase,transferase
33
1PP7|1|E+1PP7|1|F		Crystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin InrX-RAY DIFFRACTION2.4513B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
34
4KTQ|1|C+4KTQ|1|B		BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNAX-RAY DIFFRACTION2.513double helix,structureenzyme,polymerase,transferase
35
2KTQ|1|D+2KTQ|1|B		OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUSX-RAY DIFFRACTION2.313enzyme,polymerase,transferase
36
3PO5|1|C		Structure of a mutant of the large fragment of DNA polymerase I from Thermus Auqaticus in complex with an abasic site and ddATPX-RAY DIFFRACTION2.3936B-form double helix,double helix,structureenzyme,polymerase,transferase
37
3OHA|1|T+3OHA|1|P		Yeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesionX-RAY DIFFRACTION213double helix,structureenzyme,polymerase,transferase
38
1GD2|1|A+1GD2|1|B		CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-RAY DIFFRACTION213B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
39
1GD2|1|C+1GD2|1|D		CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-RAY DIFFRACTION213B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
40
1MEY|1|A+1MEY|1|B+1MEY|1|D+1MEY|1|E		CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNAX-RAY DIFFRACTION2.213B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
41
1YO5|1|A+1YO5|1|B		Analysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory siteX-RAY DIFFRACTION213B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
42
1DUX|1|D+1DUX|1|E		ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-RAY DIFFRACTION2.113DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
43
1DUX|1|A+1DUX|1|B		ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-RAY DIFFRACTION2.113DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
44
3PVV|1|F		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-RAY DIFFRACTION224B-form double helix,double helix,structureDNA replication/repair,regulatory
45
3PVP|1|F		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-RAY DIFFRACTION2.318B-form double helix,double helix,structureDNA replication/repair,regulatory
46
3PVP|1|D		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNAX-RAY DIFFRACTION2.319B-form double helix,double helix,structureDNA replication/repair,regulatory
47
3PVV|1|D		Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNAX-RAY DIFFRACTION226B-form double helix,double helix,structureDNA replication/repair,regulatory
48
3L2C|1|B+3L2C|1|C		Crystal Structure of the DNA Binding Domain of FOXO4 Bound to DNAX-RAY DIFFRACTION1.86813B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
49
3QZ7|1|P		T-3 ternary complex of Dpo4X-RAY DIFFRACTION1.99819B-form double helix,double helix,structureenzyme,polymerase,transferase
50
3QZ8|1|P		TT-4 ternary complex of Dpo4X-RAY DIFFRACTION1.99933B-form double helix,double helix,structureenzyme,polymerase,transferase
51
3PR5|1|P		Dpo4 Y12A mutant incorporating ADP opposite template dTX-RAY DIFFRACTION2.423B-form double helix,double helix,structureenzyme,polymerase,transferase
52
1YF3|1|C+1YF3|1|D		T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) ContactX-RAY DIFFRACTION2.2913enzyme,methylase,transferase
53
3RAX|1|D		Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesionX-RAY DIFFRACTION1.89137B-form double helix,double helix,structureenzyme,polymerase,transferase
54
3RAQ|1|D		Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesionX-RAY DIFFRACTION2.2535enzyme,polymerase,transferase
55
1SXQ|1|D+1SXQ|1|F		BGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,transferase
56
3GFI|1|D+3GFI|1|E		Crystal structure of ST1710 complexed with its promoter DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
57
1SXQ|1|C+1SXQ|1|E		BGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,transferase
58
3E54|1|C+3E54|1|E+3E54|1|D+3E54|1|F		Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNAX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
59
3G0R|1|G+3G0R|1|K		Complex of Mth0212 and an 8bp dsDNA with distorted endsX-RAY DIFFRACTION2.413B-form double helix,double helix,feature,mispair,structureenzyme,hydrolase,nuclease
60
1A73|1|C+1A73|1|E+1A73|1|D+1A73|1|F		INTRON-ENCODED ENDONUCLEASE I-PPOI COMPLEXED WITH DNAX-RAY DIFFRACTION1.813double helix,structureenzyme,hydrolase,nuclease
61
1F0O|1|C+1F0O|1|D		PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITEX-RAY DIFFRACTION2.513double helix,structureenzyme,hydrolase,nuclease
62
1EYU|1|C+1EYU|1|D		HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6X-RAY DIFFRACTION1.7813double helix,structureenzyme,hydrolase,nuclease
63
2PVI|1|C+2PVI|1|D		PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNAX-RAY DIFFRACTION1.7613double helix,structureenzyme,hydrolase,nuclease
64
3PVI|1|C+3PVI|1|D		D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSISX-RAY DIFFRACTION1.5913double helix,structureenzyme,hydrolase,nuclease
65
1WTE|1|X+1WTE|1|Y		Crystal structure of type II restrcition endonuclease, EcoO109I complexed with cognate DNAX-RAY DIFFRACTION1.913double helix,structureenzyme,hydrolase,nuclease
66
1CL8|1|B		A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P)X-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,hydrolase,nuclease
67
1CKQ|1|B		PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEXX-RAY DIFFRACTION1.8513double helix,structureenzyme,hydrolase,nuclease
68
1QRH|1|M		X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 AX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
69
1ERI|1|B		X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGEX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
70
2OXV|1|C		Structure of the A138T promiscuous mutant of the EcoRI restriction endonuclease bound to its cognate recognition site.X-RAY DIFFRACTION1.9513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
71
1DC1|1|C+1DC1|1|W		RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLDX-RAY DIFFRACTION1.713double helix,structureenzyme,hydrolase,nuclease
72
2IRF|1|E+2IRF|1|B		CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-RAY DIFFRACTION2.213B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
73
2IRF|1|F+2IRF|1|A		CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-RAY DIFFRACTION2.213B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
74
2IRF|1|D+2IRF|1|C		CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-RAY DIFFRACTION2.213B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
75
2C7O|1|C+2C7O|1|D		HhaI DNA methyltransferase complex with 13mer oligonucleotide containing 2-aminopurine adjacent to the target base (PCGC:GMGC) and SAHX-RAY DIFFRACTION1.913B-form double helix,double helix,structureenzyme,methylase,transferase
76
2UYC|1|C+2UYC|1|D		HhaI DNA methyltransferase R163N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-RAY DIFFRACTION213double helix,structureenzyme,methylase,transferase
77
2UZ4|1|C+2UZ4|1|D		HhaI DNA methyltransferase R165N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-RAY DIFFRACTION2.113double helix,structureenzyme,methylase,transferase
78
2C7Q|1|C+2C7Q|1|D		HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine outside the recognition sequence (paired with G) and SAHX-RAY DIFFRACTION1.8513enzyme,methylase,transferase
79
1SKM|1|C+1SKM|1|D		HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target siteX-RAY DIFFRACTION2.213B-form double helix,double helix,structureenzyme,methylase,transferase
80
2ZO0|1|D+2ZO0|1|E		mouse NP95 SRA domain DNA specific complex 1X-RAY DIFFRACTION2.1913B-form double helix,double helix,structureenzyme,ligase
81
1T7P|1|T+1T7P|1|P		T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXINX-RAY DIFFRACTION2.213double helix,structureenzyme,oxidoreductase,polymerase,transferase
82
4BDP|1|T+4BDP|1|P		CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUESX-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,polymerase,transferase
83
3EYZ|1|C+3EYZ|1|B		Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form)X-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,polymerase,transferase
84
2ZO1|1|D+2ZO1|1|E		Mouse NP95 SRA domain DNA specific complex 2X-RAY DIFFRACTION1.9613B-form double helix,double helix,structureenzyme,ligase
85
3GV5|1|F+3GV5|1|E		Human DNA polymerase iota in complex with T template DNA and incoming ddADPX-RAY DIFFRACTION213enzyme,polymerase,transferase
86
3GV5|1|T+3GV5|1|P		Human DNA polymerase iota in complex with T template DNA and incoming ddADPX-RAY DIFFRACTION213enzyme,polymerase,transferase
87
3I0X|1|C+3I0X|1|D		Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing adenine opposite to 8-oxoGX-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,hydrolase
88
3I0W|1|B+3I0W|1|C		Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoGX-RAY DIFFRACTION1.7313B-form double helix,double helix,structureenzyme,hydrolase
89
1QUM|1|D+1QUM|1|C+1QUM|1|B		CRYSTAL STRUCTURE OF ESCHERICHIA COLI ENDONUCLEASE IV IN COMPLEX WITH DAMAGED DNAX-RAY DIFFRACTION1.5513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
90
1DIZ|1|C+1DIZ|1|D		CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase
91
1DIZ|1|E+1DIZ|1|F		CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase
92
3A46|1|C+3A46|1|D		Crystal structure of MvNei1/THF complexX-RAY DIFFRACTION2.213double helix,structureenzyme,hydrolase
93
3A46|1|E+3A46|1|F		Crystal structure of MvNei1/THF complexX-RAY DIFFRACTION2.213double helix,structureenzyme,hydrolase
94
1K82|1|E+1K82|1|I		Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,hydrolase
95
1K82|1|F+1K82|1|J		Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,hydrolase
96
1K82|1|G+1K82|1|K		Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,hydrolase
97
1K82|1|H+1K82|1|L		Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.113B-form double helix,double helix,structureenzyme,hydrolase
98
1K3X|1|B+1K3X|1|C		Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNAX-RAY DIFFRACTION1.2513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
99
1K3W|1|B+1K3W|1|C		Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNAX-RAY DIFFRACTION1.4213B-form double helix,double helix,structureenzyme,hydrolase,nuclease
100
1OE5|1|F+1OE5|1|E		Xenopus SMUG1, an anti-mutator uracil-DNA GlycosylaseX-RAY DIFFRACTION2.313enzyme,hydrolase
101
1FJX|1|C+1FJX|1|D		STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCYX-RAY DIFFRACTION2.2613B-form double helix,double helix,structureenzyme,methylase,transferase
102
2HR1|1|D+2HR1|1|C		Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcyX-RAY DIFFRACTION1.9613B-form double helix,double helix,structureenzyme,methylase,transferase
103
1M5R|1|D+1M5R|1|F		Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION1.813enzyme,transferase
104
1Y6F|1|C+1Y6F|1|D		alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic siteX-RAY DIFFRACTION2.413enzyme,transferase
105
1IXY|1|C+1IXY|1|E		Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION2.513enzyme,transferase
106
1M5R|1|C+1M5R|1|E		Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION1.813enzyme,transferase
107
1SXP|1|C+1SXP|1|D		BGT in complex with a 13mer DNA containing a central A:G mismatchX-RAY DIFFRACTION2.513enzyme,transferase
108
1IXY|1|D+1IXY|1|F		Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION2.513enzyme,transferase
109
3H8X|1|B+3H8X|1|C		Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-RAY DIFFRACTION1.9513enzyme,oxidoreductase
110
3O1O|1|B+3O1O|1|C		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.9213enzyme,oxidoreductase
111
3O1M|1|B+3O1M|1|C		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.7513enzyme,oxidoreductase
112
3O1P|1|B+3O1P|1|C		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.5113enzyme,oxidoreductase
113
3BI3|1|B+3BI3|1|C		X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactorsX-RAY DIFFRACTION1.913enzyme,oxidoreductase
114
3O1S|1|C+3O1S|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.5813enzyme,oxidoreductase
115
3O1R|1|C+3O1R|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.7713enzyme,oxidoreductase
116
3O1U|1|C+3O1U|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.5413enzyme,oxidoreductase
117
3O1T|1|C+3O1T|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.4813enzyme,oxidoreductase
118
3O1V|1|C+3O1V|1|B		Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.913enzyme,oxidoreductase
119
3BIE|1|C+3BIE|1|B		X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KGX-RAY DIFFRACTION1.6813enzyme,oxidoreductase
120
2FCC|1|E+2FCC|1|F		Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-RAY DIFFRACTION2.313double helix,structureenzyme,hydrolase,nuclease
121
2FCC|1|C+2FCC|1|D		Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-RAY DIFFRACTION2.313double helix,structureenzyme,hydrolase,nuclease
122
3BKZ|1|B+3BKZ|1|C		X-ray structure of E coli AlkB crosslinked to dsDNA in the active siteX-RAY DIFFRACTION1.6513B-form double helix,double helix,feature,mispair,structureenzyme,oxidoreductase
123
1PUY|1|A		1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-RAY DIFFRACTION1.513B-form double helix,double helix,structure
124
1PUY|1|B		1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-RAY DIFFRACTION1.513B-form double helix,double helix,structure

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