Equivalence class DNA_2.5_10786.5 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3O1M|1|B+ 3O1M|1|C (rep) | DNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(ME6)P*AP*CP*CP*GP*T)-3'), DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.75 | 2010-11-17 | ||||
| 2 | 3MR2|1|T+ 3MR2|1|P | DNA (5'-D(*T*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*TP*CP*AP*T)-3') | Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm) | X-ray diffraction | 1.83 | 2010-06-30 | ||||
| 3 | 3O1P|1|B+ 3O1P|1|C | DNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(EDA)P*AP*CP*CP*GP*T)-3'), DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.51 | 2010-11-17 | ||||
| 4 | 3BKZ|1|B+ 3BKZ|1|C | DNA (5'-D(*DTP*DAP*DGP*DGP*DTP*DAP*DAP*DCP*DAP*DTP*DCP*DGP*DT)-3'), DNA (5'-D(*DAP*DAP*DCP*DGP*DAP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3') | X-ray structure of E coli AlkB crosslinked to dsDNA in the active site | X-ray diffraction | 1.65 | 2008-04-22 | ||||
| 5 | 3O1T|1|C+ 3O1T|1|B | DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDU)P*AP*CP*CP*GP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.48 | 2010-11-17 | ||||
| 6 | 3BIE|1|C+ 3BIE|1|B | DNA (5'-D(*DAP*DAP*DCP*DGP*DGP*DTP*DTP*DTP*DTP*DAP*DCP*DCP*DT)-3'), DNA (5'-D(P*DAP*DGP*DGP*DTP*DAP*DAP*(MA7)P*DAP*DCP*DCP*DGP*DT)-3') | X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KG | X-ray diffraction | 1.68 | 2008-04-22 | ||||
| 7 | 3I0W|1|B+ 3I0W|1|C | 5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*A)-3' | Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoG | X-ray diffraction | 1.73 | 2009-09-29 | ||||
| 8 | 3I0X|1|C+ 3I0X|1|D | 5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*AP*TP*GP*GP*A)-3' | Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing adenine opposite to 8-oxoG | X-ray diffraction | 1.8 | 2009-09-29 | ||||
| 9 | 1SXQ|1|C+ 1SXQ|1|E | 5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3' | BGT in complex with a 13mer DNA containing a central C:G base pair and UDP | X-ray diffraction | 1.8 | 2004-06-22 | ||||
| 10 | 1M5R|1|C+ 1M5R|1|E | 5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3' | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-ray diffraction | 1.8 | 2002-12-11 | ||||
| 11 | 1SXQ|1|D+ 1SXQ|1|F | 5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3' | BGT in complex with a 13mer DNA containing a central C:G base pair and UDP | X-ray diffraction | 1.8 | 2004-06-22 | ||||
| 12 | 1M5R|1|D+ 1M5R|1|F | 5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3' | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-ray diffraction | 1.8 | 2002-12-11 | ||||
| 13 | 3O1U|1|C+ 3O1U|1|B | DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDV)P*AP*CP*CP*GP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.54 | 2010-11-17 | ||||
| 14 | 2HHW|1|C+ 2HHW|1|B | 5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3' | ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformation | X-ray diffraction | 1.88 | 2006-12-12 | ||||
| 15 | 2HHW|1|F+ 2HHW|1|E | 5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3' | ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformation | X-ray diffraction | 1.88 | 2006-12-12 | ||||
| 16 | 3O1O|1|B+ 3O1O|1|C | DNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(MFT)P*AP*CP*CP*GP*T)-3'), DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.92 | 2010-11-17 | ||||
| 17 | 3O1S|1|C+ 3O1S|1|B | DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDQ)P*AP*CP*CP*GP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.58 | 2010-11-17 | ||||
| 18 | 3H8R|1|B+ 3H8R|1|C | 5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*(6MA)P*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*TP*AP*TP*AP*AP*TP*AP*CP*A)-3' | synthetic construct | Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system | X-ray diffraction | 1.77 | 2010-03-31 | |||
| 19 | 3O1R|1|C+ 3O1R|1|B | DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDK)P*AP*CP*CP*GP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.77 | 2010-11-17 | ||||
| 20 | 2HVI|1|C+ 2HVI|1|B | 5'-D(*C*AP*TP*GP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3' | ddCTP:G pair in the polymerase active site (0 position) | X-ray diffraction | 1.98 | 2006-12-12 | ||||
| 21 | 2HVI|1|F+ 2HVI|1|E | 5'-D(*C*AP*TP*GP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3' | ddCTP:G pair in the polymerase active site (0 position) | X-ray diffraction | 1.98 | 2006-12-12 | ||||
| 22 | 3BTX|1|B+ 3BTX|1|C | DNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3') | X-ray structure of human ABH2 bound to dsDNA through active site cross-linking | X-ray diffraction | 2 | 2008-04-22 | ||||
| 23 | 2UYC|1|C+ 2UYC|1|D | 5'-D(*TP*GP*GP*AP*TP*GP*5CMP*GP*CP*TP *GP*AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3' | synthetic construct | HhaI DNA methyltransferase R163N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAH | X-ray diffraction | 2 | 2008-05-27 | |||
| 24 | 3OHA|1|T+ 3OHA|1|P | 5'-D(P*TP*(8OG)P*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3' | Yeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesion | X-ray diffraction | 2 | 2010-12-22 | ||||
| 25 | 3L2C|1|B+ 3L2C|1|C | FOXO consensus binding sequence, plus strand, FOXO consensus binding sequence, minus strand | Crystal Structure of the DNA Binding Domain of FOXO4 Bound to DNA | X-ray diffraction | 1.868 | 2009-12-29 | ||||
| 26 | 3O1V|1|C+ 3O1V|1|B | DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDJ)P*AP*CP*CP*GP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.9 | 2010-11-17 | ||||
| 27 | 2UZ4|1|C+ 2UZ4|1|D | 5'-D(*TP*GP*GP*AP*TP*GP*5CMP*GP*CP*TP*GP *AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3' | HhaI DNA methyltransferase R165N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAH | X-ray diffraction | 2.1 | 2008-06-03 | ||||
| 28 | 3H8X|1|B+ 3H8X|1|C | 5'-D(*CP*TP*GP*TP*(ME6)P*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*AP*AP*TP*AP*AP*GP*AP*CP*A)-3' | synthetic construct | Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system | X-ray diffraction | 1.95 | 2010-03-31 | |||
| 29 | 2ZO1|1|D+ 2ZO1|1|E | DNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3'), DNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3') | Mouse NP95 SRA domain DNA specific complex 2 | X-ray diffraction | 1.96 | 2008-09-09 | ||||
| 30 | 3QZ8|1|P | 5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*AP*GP*G)-3' | TT-4 ternary complex of Dpo4 | X-ray diffraction | 1.999 | 2011-04-06 | ||||
| 31 | 3H8O|1|B+ 3H8O|1|C | 5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*(MA7)P*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*TP*AP*TP*AP*AP*TP*AP*CP*A)-3' | synthetic construct | Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system | X-ray diffraction | 2 | 2010-03-31 | |||
| 32 | 1PUY|1|A | 5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3' | 1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker | X-ray diffraction | 1.5 | 2003-10-14 | ||||
| 33 | 1PUY|1|B | 5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3' | 1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker | X-ray diffraction | 1.5 | 2003-10-14 | ||||
| 34 | 3BI3|1|B+ 3BI3|1|C | DNA (5'-D(*TP*AP*GP*GP*TP*AP*AP*(MA7)P*AP*(2YR)P*CP*GP*T)-3'), DNA (5'-D(*DAP*DAP*DCP*DGP*DGP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3') | X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactors | X-ray diffraction | 1.9 | 2008-04-22 | ||||
| 35 | 1OE5|1|F+ 1OE5|1|E | 5'-D(*CP*3DRP*GP*GP*AP*CP*TP*3DRP*AP*CP*GP*GP*GP)-3', 5'-D(*CP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*G)-3' | Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase | X-ray diffraction | 2.3 | 2003-07-11 | ||||
| 36 | 3E6C|1|A+ 3E6C|1|B | DNA (5'-D(P*DGP*DGP*DCP*DAP*DTP*DGP*DTP*DTP*DAP*DAP*DTP*DGP*DC)-3'), DNA (5'-D(P*DGP*DCP*DAP*DTP*DTP*DAP*DAP*DCP*DAP*DTP*DGP*DCP*DC)-3') | CprK OCPA DNA Complex | X-ray diffraction | 1.8 | 2008-09-30 | ||||
| 37 | 4BDP|1|T+ 4BDP|1|P | DNA (5'-D(*TP*AP*TP*TP*GP*CP*AP*TP*GP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*CP*AP*TP*GP*CP*AP*A)-3') | CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUES | X-ray diffraction | 1.8 | 1999-01-13 | ||||
| 38 | 1YO5|1|A+ 1YO5|1|B | Enhancer site of Prostate Specific Antigen Promoter Region | Analysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory site | X-ray diffraction | 2 | 2005-05-17 | ||||
| 39 | 2IRF|1|D+ 2IRF|1|C | DNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3') | CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX. | X-ray diffraction | 2.2 | 1999-10-08 | ||||
| 40 | 2IRF|1|E+ 2IRF|1|B | DNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3') | CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX. | X-ray diffraction | 2.2 | 1999-10-08 | ||||
| 41 | 2IRF|1|F+ 2IRF|1|A | DNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3') | CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX. | X-ray diffraction | 2.2 | 1999-10-08 | ||||
| 42 | 1Y8Z|1|C+ 1Y8Z|1|D | 5'-D(*GP*AP*TP*AP*CP*TP*(5HU)P*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*G)-3' | alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a HMU base at 1.9 A resolution | X-ray diffraction | 1.9 | 2005-08-30 | ||||
| 43 | 3EYZ|1|C+ 3EYZ|1|B | 5'-D(*DAP*DTP*DGP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DGP*DA)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DGP*DC)-3' | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form) | X-ray diffraction | 2.1 | 2009-11-10 | ||||
| 44 | 2OXV|1|C | DNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | Structure of the A138T promiscuous mutant of the EcoRI restriction endonuclease bound to its cognate recognition site. | X-ray diffraction | 1.95 | 2007-10-23 | ||||
| 45 | 1GD2|1|A+ 1GD2|1|B | DNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3') | CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA | X-ray diffraction | 2 | 2000-10-02 | ||||
| 46 | 1GD2|1|C+ 1GD2|1|D | DNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3') | CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA | X-ray diffraction | 2 | 2000-10-02 | ||||
| 47 | 2ZO0|1|D+ 2ZO0|1|E | DNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3'), DNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3') | mouse NP95 SRA domain DNA specific complex 1 | X-ray diffraction | 2.19 | 2008-09-09 | ||||
| 48 | 2HHX|1|C+ 2HHX|1|B | 5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*G)-3' | O6-methyl-guanine in the polymerase template preinsertion site | X-ray diffraction | 2.26 | 2006-12-12 | ||||
| 49 | 1WTE|1|X+ 1WTE|1|Y | 5'-D(*AP*CP*CP*GP*GP*GP*CP*CP*CP*TP*GP*CP*C)-3', 5'-D(*GP*GP*CP*AP*GP*GP*GP*CP*CP*CP*GP*GP*T)-3' | Crystal structure of type II restrcition endonuclease, EcoO109I complexed with cognate DNA | X-ray diffraction | 1.9 | 2004-12-14 | ||||
| 50 | 1J1V|1|B+ 1J1V|1|C | 5'-D(*TP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3' | Crystal structure of DnaA domainIV complexed with DnaAbox DNA | X-ray diffraction | 2.1 | 2003-04-22 | ||||
| 51 | 3QZ7|1|P | 5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*GP*GP*G)-3' | T-3 ternary complex of Dpo4 | X-ray diffraction | 1.998 | 2011-04-06 | ||||
| 52 | 3GV5|1|F+ 3GV5|1|E | 5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3' | Human DNA polymerase iota in complex with T template DNA and incoming ddADP | X-ray diffraction | 2 | 2009-06-02 | ||||
| 53 | 3GV5|1|T+ 3GV5|1|P | 5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3' | Human DNA polymerase iota in complex with T template DNA and incoming ddADP | X-ray diffraction | 2 | 2009-06-02 | ||||
| 54 | 3A46|1|C+ 3A46|1|D | DNA | Crystal structure of MvNei1/THF complex | X-ray diffraction | 2.2 | 2009-07-21 | ||||
| 55 | 3A46|1|E+ 3A46|1|F | DNA | Crystal structure of MvNei1/THF complex | X-ray diffraction | 2.2 | 2009-07-21 | ||||
| 56 | 3G0R|1|G+ 3G0R|1|K | 5'-D(*GP*CP*TP*GP*CP*GP*CP*AP*GP*GP*GP*CP*G)-3', 5'-D(*CP*CP*CP*TP*GP*UP*GP*CP*AP*GP*C)-3' | Complex of Mth0212 and an 8bp dsDNA with distorted ends | X-ray diffraction | 2.4 | 2010-03-09 | ||||
| 57 | 3BTY|1|B+ 3BTY|1|C | DNA (5'-D(*DCP*DTP*DGP*DTP*DAP*DTP*(MA7)P*DAP*DCP*DTP*DGP*DCP*DG)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DGP*DTP*DTP*DAP*DTP*DAP*DCP*DA)-3') | Crystal structure of human ABH2 bound to dsDNA containing 1meA through cross-linking away from active site | X-ray diffraction | 2.35 | 2008-04-22 | ||||
| 58 | 3PR5|1|P | DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3') | Dpo4 Y12A mutant incorporating ADP opposite template dT | X-ray diffraction | 2.4 | 2011-02-23 | ||||
| 59 | 1PP7|1|E+ 1PP7|1|F | FERREDOXIN INR | Crystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin Inr | X-ray diffraction | 2.45 | 2003-11-18 | ||||
| 60 | 1U8B|1|E+ 1U8B|1|D | 5'-D(*AP*AP*TP*CP*TP*TP*GP*CP*GP*CP*TP*TP*T)-3', 5'-D(P*AP*AP*AP*GP*CP*GP*CP*AP*AP*GP*AP*T)-3' | Crystal structure of the methylated N-ADA/DNA complex | X-ray diffraction | 2.1 | 2005-10-11 | ||||
| 61 | 1YQM|1|B+ 1YQM|1|C | 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(7GU)P*GP*TP*CP*TP*AP*C)-3' | Catalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNA | X-ray diffraction | 2.5 | 2005-04-05 | ||||
| 62 | 2R8I|1|T+ 2R8I|1|P | DNA (5'-D(*DTP*DCP*DAP*DTP*(P)P*DGP*DAP*DAP*DTP*DCP*DCP*DTP*DTP*DCP*DCP*DCP*DCP*DC)-3'), DNA (5'-D(*DGP*DGP*DGP*DGP*DGP*DAP*DAP*DGP*DGP*DAP*DTP*DTP*DC)-3') | Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase | X-ray diffraction | 2.38 | 2008-07-22 | ||||
| 63 | 1Y6F|1|C+ 1Y6F|1|D | 5'-D(*GP*AP*TP*AP*CP*TP*(3DR)P*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3' | alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic site | X-ray diffraction | 2.4 | 2005-08-30 | ||||
| 64 | 3GFI|1|D+ 3GFI|1|E | 5'-D(*TP*AP*AP*CP*AP*AP*TP*AP*GP*CP*AP*AP*A)-3', 5'-D(*TP*TP*GP*CP*TP*AP*TP*TP*GP*T)-3' | Crystal structure of ST1710 complexed with its promoter DNA | X-ray diffraction | 2.1 | 2009-08-25 | ||||
| 65 | 2FCC|1|C+ 2FCC|1|D | DNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3') | Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic Site | X-ray diffraction | 2.3 | 2006-10-03 | ||||
| 66 | 2FCC|1|E+ 2FCC|1|F | DNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3') | Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic Site | X-ray diffraction | 2.3 | 2006-10-03 | ||||
| 67 | 2HVH|1|C+ 2HVH|1|B | 5'-D(*CP*A*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3' | ddCTP:O6MeG pair in the polymerase active site (0 position) | X-ray diffraction | 2.492 | 2006-12-12 | ||||
| 68 | 2HVH|1|F+ 2HVH|1|E | 5'-D(*CP*A*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3' | ddCTP:O6MeG pair in the polymerase active site (0 position) | X-ray diffraction | 2.492 | 2006-12-12 | ||||
| 69 | 3BU0|1|B+ 3BU0|1|C | DNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3') | crystal structure of human ABH2 cross-linked to dsDNA with cofactors | X-ray diffraction | 2.5 | 2008-04-22 | ||||
| 70 | 1SXP|1|C+ 1SXP|1|D | 5'-D(*A*AP*TP*AP*CP*TP*AP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*T)-3' | BGT in complex with a 13mer DNA containing a central A:G mismatch | X-ray diffraction | 2.5 | 2004-06-22 | ||||
| 71 | 2R8H|1|T+ 2R8H|1|P | DNA (5'-D(*DTP*DCP*DAP*DCP*(P)P*DGP*DAP*DAP*DTP*DCP*DCP*DTP*DTP*DCP*DCP*DCP*DCP*DC)-3'), DNA (5'-D(*DGP*DGP*DGP*DGP*DGP*DAP*DAP*DGP*DGP*DAP*DTP*DTP*DC)-3') | Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase | X-ray diffraction | 2.48 | 2008-07-22 | ||||
| 72 | 1IXY|1|C+ 1IXY|1|E | 5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3' | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-ray diffraction | 2.5 | 2002-12-04 | ||||
| 73 | 1IXY|1|D+ 1IXY|1|F | 5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3' | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-ray diffraction | 2.5 | 2002-12-04 | ||||
| 74 | 3QI5|1|C | DNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDC)P*TP*TP*GP*CP*CP*T)-3') | Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNA | X-ray diffraction | 2.2 | 2011-03-09 | ||||
| 75 | 3QI5|1|D | DNA (5'-D(*GP*GP*CP*AP*AP*GP*CP*AP*TP*GP*TP*CP*A)-3') | Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNA | X-ray diffraction | 2.2 | 2011-03-09 | ||||
| 76 | 3QI5|1|E | DNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDC)P*TP*TP*GP*CP*CP*T)-3') | Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNA | X-ray diffraction | 2.2 | 2011-03-09 | ||||
| 77 | 3QI5|1|F | DNA (5'-D(*GP*GP*CP*AP*AP*GP*CP*AP*TP*GP*TP*CP*A)-3') | Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNA | X-ray diffraction | 2.2 | 2011-03-09 | ||||
| 78 | 1K3X|1|B+ 1K3X|1|C | 5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' | Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNA | X-ray diffraction | 1.25 | 2002-10-04 | ||||
| 79 | 1K3W|1|B+ 1K3W|1|C | 5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' | Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNA | X-ray diffraction | 1.42 | 2002-10-04 | ||||
| 80 | 1LLM|1|A+ 1LLM|1|B | 5'-D(*TP*CP*CP*CP*AP*CP*GP*CP*GP*TP*GP*GP*G)-3' | Crystal Structure of a Zif23-GCN4 Chimera Bound to DNA | X-ray diffraction | 1.5 | 2003-09-30 | ||||
| 81 | 1QUM|1|D+ 1QUM|1|C+ 1QUM|1|B | 5'-D(*CP*GP*TP*CP*C)-3', 5'-D(*(3DR)P*CP*GP*AP*CP*GP*A)-3', 5'-D(*TP*CP*GP*TP*CP*GP*GP*GP*GP*AP*CP*G)-3' | CRYSTAL STRUCTURE OF ESCHERICHIA COLI ENDONUCLEASE IV IN COMPLEX WITH DAMAGED DNA | X-ray diffraction | 1.55 | 1999-08-31 | ||||
| 82 | 3PVI|1|C+ 3PVI|1|D | DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3') | D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSIS | X-ray diffraction | 1.59 | 1998-10-14 | ||||
| 83 | 1DC1|1|C+ 1DC1|1|W | DNA (5'-D(*T*AP*TP*AP*CP*TP*CP*GP*AP*GP*TP*AP*T)-3') | RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLD | X-ray diffraction | 1.7 | 2001-02-21 | ||||
| 84 | 2PVI|1|C+ 2PVI|1|D | DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*(C38)P*TP*GP*GP*TP*C)-3') | PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNA | X-ray diffraction | 1.76 | 1999-12-20 | ||||
| 85 | 1EYU|1|C+ 1EYU|1|D | DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3') | HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6 | X-ray diffraction | 1.78 | 2000-07-21 | ||||
| 86 | 1CL8|1|B | DNA (5'-D(*TP*CP*GP*CP*GP*AP*(PRN)P*TP*TP*CP*GP*CP*G)-3') | A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P) | X-ray diffraction | 1.8 | 1999-05-19 | ||||
| 87 | 1A73|1|C+ 1A73|1|E+ 1A73|1|D+ 1A73|1|F | DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3') | INTRON-ENCODED ENDONUCLEASE I-PPOI COMPLEXED WITH DNA | X-ray diffraction | 1.8 | 1998-10-14 | ||||
| 88 | 1CKQ|1|B | DNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEX | X-ray diffraction | 1.85 | 1999-04-26 | ||||
| 89 | 2C7Q|1|C+ 2C7Q|1|D | 5'-D(*T*GP*GP*(2PR)*GP*GP*(5CM)*GP*CP*TP*GP* AP*C)-3', 5'-D(*T*GP*TP*CP*AP*GP*CP*GP*CP*CP*GP*CP*C)-3' | synthetic construct | HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine outside the recognition sequence (paired with G) and SAH | X-ray diffraction | 1.85 | 2005-12-14 | |||
| 90 | 2C7O|1|C+ 2C7O|1|D | 5'-D(*T*GP*GP*AP*TP*GP*(5CM)*GP*CP*TP*GP*AP *C)-3', 5'-D(*T*GP*TP*CP*AP*(2PR)*CP*GP*CP*AP*TP*CP *C)-3' | synthetic construct | HhaI DNA methyltransferase complex with 13mer oligonucleotide containing 2-aminopurine adjacent to the target base (PCGC:GMGC) and SAH | X-ray diffraction | 1.9 | 2005-12-14 | |||
| 91 | 2HR1|1|D+ 2HR1|1|C | 5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3' | Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcy | X-ray diffraction | 1.96 | 2006-09-19 | ||||
| 92 | 1DUX|1|A+ 1DUX|1|B | DNA (5'-D(*TP*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*T)-3'), DNA (5'-D(*AP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*A)-3') | ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITION | X-ray diffraction | 2.1 | 2000-04-17 | ||||
| 93 | 1DUX|1|D+ 1DUX|1|E | DNA (5'-D(*TP*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*T)-3'), DNA (5'-D(*AP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*A)-3') | ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITION | X-ray diffraction | 2.1 | 2000-04-17 | ||||
| 94 | 1K82|1|E+ 1K82|1|I | 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-ray diffraction | 2.1 | 2002-06-14 | ||||
| 95 | 1K82|1|F+ 1K82|1|J | 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-ray diffraction | 2.1 | 2002-06-14 | ||||
| 96 | 1K82|1|G+ 1K82|1|K | 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-ray diffraction | 2.1 | 2002-06-14 | ||||
| 97 | 1K82|1|H+ 1K82|1|L | 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-ray diffraction | 2.1 | 2002-06-14 | ||||
| 98 | 1MEY|1|A+ 1MEY|1|B+ 1MEY|1|D+ 1MEY|1|E | DNA (5'-D(*AP*TP*GP*AP*GP*GP*CP*AP*GP*AP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*CP*TP*GP*CP*CP*TP*(C38)P*A)-3') | CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNA | X-ray diffraction | 2.2 | 1997-03-12 | ||||
| 99 | 1SKM|1|C+ 1SKM|1|D | 5'-D(*TP*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3', 5'-D(*T*GP*TP*CP*AP*GP*(HCX)P*GP*CP*AP*TP*GP*G)-3' | HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site | X-ray diffraction | 2.2 | 2004-08-24 | ||||
| 100 | 1T7P|1|T+ 1T7P|1|P | DNA (5'-D(P*CP*CP*TP*TP*GP*GP*CP*AP*CP*TP*GP*GP*C)-3'), DNA (5'-D(P*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*2DA)-3') | T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXIN | X-ray diffraction | 2.2 | 1998-02-25 | ||||
| 101 | 1FJX|1|C+ 1FJX|1|D | DNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3') | STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCY | X-ray diffraction | 2.26 | 2000-12-15 | ||||
| 102 | 1YF3|1|C+ 1YF3|1|D | 5'-D(*AP*CP*CP*AP*TP*GP*AP*TP*CP*TP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*AP*GP*AP*TP*CP*AP*TP*GP*G)-3' | T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) Contact | X-ray diffraction | 2.29 | 2005-05-17 | ||||
| 103 | 3KTU|1|B+ 3KTU|1|C | DNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*AP*(FDG)P*GP*TP*CP*TP*AP*C)-3') | synthetic construct | Structure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNA | X-ray diffraction | 2.3 | 2010-07-14 | |||
| 104 | 2KTQ|1|D+ 2KTQ|1|B | DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3') | OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS | X-ray diffraction | 2.3 | 1999-01-13 | ||||
| 105 | 1F4R|1|D+ 1F4R|1|E | DNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDA)P*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3') | CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA | X-ray diffraction | 2.4 | 2000-12-11 | ||||
| 106 | 1F6O|1|D+ 1F6O|1|E | DNA (5'-D(*GP*AP*CP*AP*TP*GP*(YRR)P*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3') | CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNA | X-ray diffraction | 2.4 | 2000-12-11 | ||||
| 107 | 1ERI|1|B | DNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGE | X-ray diffraction | 2.5 | 1995-02-07 | ||||
| 108 | 4KTQ|1|C+ 4KTQ|1|B | DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') | BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNA | X-ray diffraction | 2.5 | 1999-01-13 | ||||
| 109 | 1DIZ|1|C+ 1DIZ|1|D | DNA (5'-D(*GP*AP*CP*AP*TP*GP*AP*(NRI)P*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3') | Escherichia coli | CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNA | X-ray diffraction | 2.5 | 2000-03-20 | |||
| 110 | 3E54|1|C+ 3E54|1|E+ 3E54|1|D+ 3E54|1|F | DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(*DTP*DTP*DGP*DGP*DCP*DTP*DAP*DCP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(P*DGP*DGP*DTP*DAP*DGP*DCP*DCP*DAP*DA)-3'), DNA (5'-D(P*DGP*DAP*DGP*DAP*DGP*DTP*DCP*DAP*DG)-3') | Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNA | X-ray diffraction | 2.5 | 2008-12-30 | ||||
| 111 | 1F0O|1|C+ 1F0O|1|D | (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C-3') | PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITE | X-ray diffraction | 2.5 | 2000-11-06 | ||||
| 112 | 1DIZ|1|E+ 1DIZ|1|F | DNA (5'-D(*GP*AP*CP*AP*TP*GP*AP*(NRI)P*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3') | Escherichia coli | CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNA | X-ray diffraction | 2.5 | 2000-03-20 | |||
| 113 | 1TX3|1|E+ 1TX3|1|F+ 1TX3|1|G+ 1TX3|1|H | 5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*G)-3' | HINCII BOUND TO COGNATE DNA | X-ray diffraction | 2.5 | 2005-02-15 | ||||
| 114 | 1QRH|1|M | 5'-(TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G*)-3' | X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 A | X-ray diffraction | 2.5 | 1999-06-23 |
Release history
| Release | 0.11 |
|---|---|
| Date | 2011-04-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1PUY|1|B | 1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker | X-RAY DIFFRACTION | 1.5 | 13 | B-form double helix,double helix,structure | |
| 2 | 1PUY|1|A | 1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker | X-RAY DIFFRACTION | 1.5 | 13 | B-form double helix,double helix,structure | |
| 3 | 2OXV|1|C | Structure of the A138T promiscuous mutant of the EcoRI restriction endonuclease bound to its cognate recognition site. | X-RAY DIFFRACTION | 1.95 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 4 | 1CKQ|1|B | PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEX | X-RAY DIFFRACTION | 1.85 | 13 | double helix,structure | enzyme,hydrolase,nuclease |
| 5 | 1CL8|1|B | A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P) | X-RAY DIFFRACTION | 1.8 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 6 | 2C7O|1|C+2C7O|1|D | HhaI DNA methyltransferase complex with 13mer oligonucleotide containing 2-aminopurine adjacent to the target base (PCGC:GMGC) and SAH | X-RAY DIFFRACTION | 1.9 | 13 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 7 | 2C7Q|1|C+2C7Q|1|D | HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine outside the recognition sequence (paired with G) and SAH | X-RAY DIFFRACTION | 1.85 | 13 | enzyme,methylase,transferase | |
| 8 | 2UZ4|1|C+2UZ4|1|D | HhaI DNA methyltransferase R165N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAH | X-RAY DIFFRACTION | 2.1 | 13 | double helix,structure | enzyme,methylase,transferase |
| 9 | 2UYC|1|C+2UYC|1|D | HhaI DNA methyltransferase R163N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAH | X-RAY DIFFRACTION | 2 | 13 | double helix,structure | enzyme,methylase,transferase |
| 10 | 1SKM|1|C+1SKM|1|D | HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site | X-RAY DIFFRACTION | 2.2 | 13 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 11 | 4BDP|1|T+4BDP|1|P | CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUES | X-RAY DIFFRACTION | 1.8 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 12 | 3EYZ|1|C+3EYZ|1|B | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form) | X-RAY DIFFRACTION | 2.1 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 13 | 1T7P|1|T+1T7P|1|P | T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXIN | X-RAY DIFFRACTION | 2.2 | 13 | double helix,structure | enzyme,oxidoreductase,polymerase,transferase |
| 14 | 2ZO0|1|D+2ZO0|1|E | mouse NP95 SRA domain DNA specific complex 1 | X-RAY DIFFRACTION | 2.19 | 13 | B-form double helix,double helix,structure | enzyme,ligase |
| 15 | 2ZO1|1|D+2ZO1|1|E | Mouse NP95 SRA domain DNA specific complex 2 | X-RAY DIFFRACTION | 1.96 | 13 | B-form double helix,double helix,structure | enzyme,ligase |
| 16 | 3GV5|1|F+3GV5|1|E | Human DNA polymerase iota in complex with T template DNA and incoming ddADP | X-RAY DIFFRACTION | 2 | 13 | enzyme,polymerase,transferase | |
| 17 | 3GV5|1|T+3GV5|1|P | Human DNA polymerase iota in complex with T template DNA and incoming ddADP | X-RAY DIFFRACTION | 2 | 13 | enzyme,polymerase,transferase | |
| 18 | 2IRF|1|D+2IRF|1|C | CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX. | X-RAY DIFFRACTION | 2.2 | 13 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 19 | 2IRF|1|F+2IRF|1|A | CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX. | X-RAY DIFFRACTION | 2.2 | 13 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 20 | 2IRF|1|E+2IRF|1|B | CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX. | X-RAY DIFFRACTION | 2.2 | 13 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 21 | 4KTQ|1|C+4KTQ|1|B | BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNA | X-RAY DIFFRACTION | 2.5 | 13 | double helix,structure | enzyme,polymerase,transferase |
| 22 | 2KTQ|1|D+2KTQ|1|B | OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS | X-RAY DIFFRACTION | 2.3 | 13 | enzyme,polymerase,transferase | |
| 23 | 1PP7|1|E+1PP7|1|F | Crystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin Inr | X-RAY DIFFRACTION | 2.45 | 13 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 24 | 3L2C|1|B+3L2C|1|C | Crystal Structure of the DNA Binding Domain of FOXO4 Bound to DNA | X-RAY DIFFRACTION | 1.868 | 13 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 25 | 1YF3|1|C+1YF3|1|D | T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) Contact | X-RAY DIFFRACTION | 2.29 | 13 | enzyme,methylase,transferase | |
| 26 | 3QZ7|1|P | T-3 ternary complex of Dpo4 | X-RAY DIFFRACTION | 1.998 | 19 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 27 | 3QZ8|1|P | TT-4 ternary complex of Dpo4 | X-RAY DIFFRACTION | 1.999 | 33 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 28 | 3PR5|1|P | Dpo4 Y12A mutant incorporating ADP opposite template dT | X-RAY DIFFRACTION | 2.4 | 23 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 29 | 3E54|1|C+3E54|1|E+3E54|1|D+3E54|1|F | Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNA | X-RAY DIFFRACTION | 2.5 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 30 | 3G0R|1|G+3G0R|1|K | Complex of Mth0212 and an 8bp dsDNA with distorted ends | X-RAY DIFFRACTION | 2.4 | 13 | B-form double helix,double helix,feature,mispair,structure | enzyme,hydrolase,nuclease |
| 31 | 1SXQ|1|C+1SXQ|1|E | BGT in complex with a 13mer DNA containing a central C:G base pair and UDP | X-RAY DIFFRACTION | 1.8 | 13 | B-form double helix,double helix,structure | enzyme,transferase |
| 32 | 1LLM|1|A+1LLM|1|B | Crystal Structure of a Zif23-GCN4 Chimera Bound to DNA | X-RAY DIFFRACTION | 1.5 | 13 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 33 | 1J1V|1|B+1J1V|1|C | Crystal structure of DnaA domainIV complexed with DnaAbox DNA | X-RAY DIFFRACTION | 2.1 | 13 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
| 34 | 1U8B|1|E+1U8B|1|D | Crystal structure of the methylated N-ADA/DNA complex | X-RAY DIFFRACTION | 2.1 | 13 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription |
| 35 | 1MEY|1|A+1MEY|1|B+1MEY|1|D+1MEY|1|E | CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNA | X-RAY DIFFRACTION | 2.2 | 13 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 36 | 1YO5|1|A+1YO5|1|B | Analysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory site | X-RAY DIFFRACTION | 2 | 13 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 37 | 1DUX|1|A+1DUX|1|B | ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITION | X-RAY DIFFRACTION | 2.1 | 13 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 38 | 1DUX|1|D+1DUX|1|E | ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITION | X-RAY DIFFRACTION | 2.1 | 13 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 39 | 1K82|1|E+1K82|1|I | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-RAY DIFFRACTION | 2.1 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 40 | 1K82|1|F+1K82|1|J | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-RAY DIFFRACTION | 2.1 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 41 | 1K82|1|G+1K82|1|K | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-RAY DIFFRACTION | 2.1 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 42 | 1K82|1|H+1K82|1|L | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-RAY DIFFRACTION | 2.1 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 43 | 1QUM|1|D+1QUM|1|C+1QUM|1|B | CRYSTAL STRUCTURE OF ESCHERICHIA COLI ENDONUCLEASE IV IN COMPLEX WITH DAMAGED DNA | X-RAY DIFFRACTION | 1.55 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 44 | 3I0X|1|C+3I0X|1|D | Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing adenine opposite to 8-oxoG | X-RAY DIFFRACTION | 1.8 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 45 | 3I0W|1|B+3I0W|1|C | Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoG | X-RAY DIFFRACTION | 1.73 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 46 | 3A46|1|C+3A46|1|D | Crystal structure of MvNei1/THF complex | X-RAY DIFFRACTION | 2.2 | 13 | double helix,structure | enzyme,hydrolase |
| 47 | 3A46|1|E+3A46|1|F | Crystal structure of MvNei1/THF complex | X-RAY DIFFRACTION | 2.2 | 13 | double helix,structure | enzyme,hydrolase |
| 48 | 1K3X|1|B+1K3X|1|C | Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNA | X-RAY DIFFRACTION | 1.25 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 49 | 1K3W|1|B+1K3W|1|C | Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNA | X-RAY DIFFRACTION | 1.42 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 50 | 3BU0|1|B+3BU0|1|C | crystal structure of human ABH2 cross-linked to dsDNA with cofactors | X-RAY DIFFRACTION | 2.5 | 13 | enzyme,oxidoreductase | |
| 51 | 3H8R|1|B+3H8R|1|C | Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system | X-RAY DIFFRACTION | 1.77 | 13 | enzyme,oxidoreductase | |
| 52 | 3BTX|1|B+3BTX|1|C | X-ray structure of human ABH2 bound to dsDNA through active site cross-linking | X-RAY DIFFRACTION | 2 | 13 | enzyme,oxidoreductase | |
| 53 | 3BTY|1|B+3BTY|1|C | Crystal structure of human ABH2 bound to dsDNA containing 1meA through cross-linking away from active site | X-RAY DIFFRACTION | 2.35 | 13 | enzyme,oxidoreductase | |
| 54 | 3H8O|1|B+3H8O|1|C | Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system | X-RAY DIFFRACTION | 2 | 13 | enzyme,oxidoreductase | |
| 55 | 3MR2|1|T+3MR2|1|P | Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm) | X-RAY DIFFRACTION | 1.83 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 56 | 1ERI|1|B | X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGE | X-RAY DIFFRACTION | 2.5 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 57 | 2HHW|1|F+2HHW|1|E | ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformation | X-RAY DIFFRACTION | 1.88 | 13 | double helix,structure | enzyme,polymerase,transferase |
| 58 | 2HHW|1|C+2HHW|1|B | ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformation | X-RAY DIFFRACTION | 1.88 | 13 | double helix,structure | enzyme,polymerase,transferase |
| 59 | 2HVI|1|F+2HVI|1|E | ddCTP:G pair in the polymerase active site (0 position) | X-RAY DIFFRACTION | 1.98 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 60 | 2HVI|1|C+2HVI|1|B | ddCTP:G pair in the polymerase active site (0 position) | X-RAY DIFFRACTION | 1.98 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 61 | 2HVH|1|F+2HVH|1|E | ddCTP:O6MeG pair in the polymerase active site (0 position) | X-RAY DIFFRACTION | 2.492 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 62 | 2HHX|1|C+2HHX|1|B | O6-methyl-guanine in the polymerase template preinsertion site | X-RAY DIFFRACTION | 2.26 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 63 | 2HVH|1|C+2HVH|1|B | ddCTP:O6MeG pair in the polymerase active site (0 position) | X-RAY DIFFRACTION | 2.492 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 64 | 1QRH|1|M | X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 A | X-RAY DIFFRACTION | 2.5 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 65 | 1DIZ|1|E+1DIZ|1|F | CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNA | X-RAY DIFFRACTION | 2.5 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 66 | 1DIZ|1|C+1DIZ|1|D | CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNA | X-RAY DIFFRACTION | 2.5 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 67 | 3QI5|1|F | Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNA | X-RAY DIFFRACTION | 2.2 | 29 | enzyme,hydrolase | |
| 68 | 3QI5|1|D | Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNA | X-RAY DIFFRACTION | 2.2 | 30 | enzyme,hydrolase | |
| 69 | 3QI5|1|E | Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNA | X-RAY DIFFRACTION | 2.2 | 30 | enzyme,hydrolase | |
| 70 | 3QI5|1|C | Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNA | X-RAY DIFFRACTION | 2.2 | 32 | enzyme,hydrolase | |
| 71 | 1F4R|1|D+1F4R|1|E | CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA | X-RAY DIFFRACTION | 2.4 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 72 | 1F6O|1|D+1F6O|1|E | CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNA | X-RAY DIFFRACTION | 2.4 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 73 | 3KTU|1|B+3KTU|1|C | Structure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNA | X-RAY DIFFRACTION | 2.3 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 74 | 1YQM|1|B+1YQM|1|C | Catalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNA | X-RAY DIFFRACTION | 2.5 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 75 | 1DC1|1|C+1DC1|1|W | RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLD | X-RAY DIFFRACTION | 1.7 | 13 | double helix,structure | enzyme,hydrolase,nuclease |
| 76 | 2PVI|1|C+2PVI|1|D | PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNA | X-RAY DIFFRACTION | 1.76 | 13 | double helix,structure | enzyme,hydrolase,nuclease |
| 77 | 1EYU|1|C+1EYU|1|D | HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6 | X-RAY DIFFRACTION | 1.78 | 13 | double helix,structure | enzyme,hydrolase,nuclease |
| 78 | 1F0O|1|C+1F0O|1|D | PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITE | X-RAY DIFFRACTION | 2.5 | 13 | double helix,structure | enzyme,hydrolase,nuclease |
| 79 | 3PVI|1|C+3PVI|1|D | D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSIS | X-RAY DIFFRACTION | 1.59 | 13 | double helix,structure | enzyme,hydrolase,nuclease |
| 80 | 1WTE|1|X+1WTE|1|Y | Crystal structure of type II restrcition endonuclease, EcoO109I complexed with cognate DNA | X-RAY DIFFRACTION | 1.9 | 13 | double helix,structure | enzyme,hydrolase,nuclease |
| 81 | 1A73|1|C+1A73|1|E+1A73|1|D+1A73|1|F | INTRON-ENCODED ENDONUCLEASE I-PPOI COMPLEXED WITH DNA | X-RAY DIFFRACTION | 1.8 | 13 | double helix,structure | enzyme,hydrolase,nuclease |
| 82 | 1FJX|1|C+1FJX|1|D | STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCY | X-RAY DIFFRACTION | 2.26 | 13 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 83 | 1OE5|1|F+1OE5|1|E | Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase | X-RAY DIFFRACTION | 2.3 | 13 | enzyme,hydrolase | |
| 84 | 3OHA|1|T+3OHA|1|P | Yeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesion | X-RAY DIFFRACTION | 2 | 13 | double helix,structure | enzyme,polymerase,transferase |
| 85 | 1GD2|1|A+1GD2|1|B | CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA | X-RAY DIFFRACTION | 2 | 13 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription |
| 86 | 1GD2|1|C+1GD2|1|D | CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA | X-RAY DIFFRACTION | 2 | 13 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription |
| 87 | 3E6C|1|A+3E6C|1|B | CprK OCPA DNA Complex | X-RAY DIFFRACTION | 1.8 | 13 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 88 | 1SXQ|1|D+1SXQ|1|F | BGT in complex with a 13mer DNA containing a central C:G base pair and UDP | X-RAY DIFFRACTION | 1.8 | 13 | B-form double helix,double helix,structure | enzyme,transferase |
| 89 | 3GFI|1|D+3GFI|1|E | Crystal structure of ST1710 complexed with its promoter DNA | X-RAY DIFFRACTION | 2.1 | 13 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 90 | 2R8H|1|T+2R8H|1|P | Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase | X-RAY DIFFRACTION | 2.48 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 91 | 2HR1|1|D+2HR1|1|C | Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcy | X-RAY DIFFRACTION | 1.96 | 13 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 92 | 1M5R|1|D+1M5R|1|F | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-RAY DIFFRACTION | 1.8 | 13 | enzyme,transferase | |
| 93 | 1Y6F|1|C+1Y6F|1|D | alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic site | X-RAY DIFFRACTION | 2.4 | 13 | enzyme,transferase | |
| 94 | 1SXP|1|C+1SXP|1|D | BGT in complex with a 13mer DNA containing a central A:G mismatch | X-RAY DIFFRACTION | 2.5 | 13 | enzyme,transferase | |
| 95 | 1IXY|1|C+1IXY|1|E | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-RAY DIFFRACTION | 2.5 | 13 | enzyme,transferase | |
| 96 | 1IXY|1|D+1IXY|1|F | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-RAY DIFFRACTION | 2.5 | 13 | enzyme,transferase | |
| 97 | 1M5R|1|C+1M5R|1|E | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-RAY DIFFRACTION | 1.8 | 13 | enzyme,transferase | |
| 98 | 1Y8Z|1|C+1Y8Z|1|D | alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a HMU base at 1.9 A resolution | X-RAY DIFFRACTION | 1.9 | 13 | enzyme,transferase | |
| 99 | 3BKZ|1|B+3BKZ|1|C | X-ray structure of E coli AlkB crosslinked to dsDNA in the active site | X-RAY DIFFRACTION | 1.65 | 13 | B-form double helix,double helix,feature,mispair,structure | enzyme,oxidoreductase |
| 100 | 3BI3|1|B+3BI3|1|C | X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactors | X-RAY DIFFRACTION | 1.9 | 13 | enzyme,oxidoreductase | |
| 101 | 3O1P|1|B+3O1P|1|C | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.51 | 13 | enzyme,oxidoreductase | |
| 102 | 3H8X|1|B+3H8X|1|C | Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system | X-RAY DIFFRACTION | 1.95 | 13 | enzyme,oxidoreductase | |
| 103 | 3O1M|1|B+3O1M|1|C | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.75 | 13 | enzyme,oxidoreductase | |
| 104 | 3O1O|1|B+3O1O|1|C | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.92 | 13 | enzyme,oxidoreductase | |
| 105 | 3O1S|1|C+3O1S|1|B | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.58 | 13 | enzyme,oxidoreductase | |
| 106 | 3O1V|1|C+3O1V|1|B | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.9 | 13 | enzyme,oxidoreductase | |
| 107 | 3O1R|1|C+3O1R|1|B | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.77 | 13 | enzyme,oxidoreductase | |
| 108 | 3O1T|1|C+3O1T|1|B | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.48 | 13 | enzyme,oxidoreductase | |
| 109 | 3O1U|1|C+3O1U|1|B | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.54 | 13 | enzyme,oxidoreductase | |
| 110 | 3BIE|1|C+3BIE|1|B | X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KG | X-RAY DIFFRACTION | 1.68 | 13 | enzyme,oxidoreductase | |
| 111 | 2FCC|1|E+2FCC|1|F | Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic Site | X-RAY DIFFRACTION | 2.3 | 13 | double helix,structure | enzyme,hydrolase,nuclease |
| 112 | 2FCC|1|C+2FCC|1|D | Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic Site | X-RAY DIFFRACTION | 2.3 | 13 | double helix,structure | enzyme,hydrolase,nuclease |
| 113 | 1TX3|1|E+1TX3|1|F+1TX3|1|G+1TX3|1|H | HINCII BOUND TO COGNATE DNA | X-RAY DIFFRACTION | 2.5 | 13 | enzyme,hydrolase,nuclease | |
| 114 | 2R8I|1|T+2R8I|1|P | Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase | X-RAY DIFFRACTION | 2.38 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
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