Equivalence class DNA_2.0_99532.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1FQ2|1|A+ 1FQ2|1|B (rep) | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | CRYSTAL STRUCTURE ANALYSIS OF THE POTASSIUM FORM OF B-DNA DODECAMER CGCGAATTCGCG | X-ray diffraction | 1.2 | 2000-11-27 | ||||
| 2 | 1N1O|1|A+ 1N1O|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*(TFT)P*TP*CP*GP*CP*G)-3' | Crystal Structure of a B-form DNA Duplex Containing (L)-alpha-threofuranosyl (3'-2') Nucleosides: A Four-Carbon Sugar is Easily Accommodated into the Backbone of DNA | X-ray diffraction | 1.2 | 2002-11-15 | ||||
| 3 | 1DC0|1|A+ 1DC0|1|B | DNA (5'-D(*CP*AP*TP*GP*GP*GP*CP*CP*CP*AP*TP*G)-3') | CRYSTAL STRUCTURE OF AN A/B-DNA INTERMEDIATE CATGGGCCCATG | X-ray diffraction | 1.3 | 2000-03-06 | ||||
| 4 | 423D|1|A+ 423D|1|B | DNA (5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3') | 5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3' | X-ray diffraction | 1.6 | 1999-10-14 | ||||
| 5 | 1DPN|1|A+ 1DPN|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3') | B-DODECAMER CGCGAA(TAF)TCGCG WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE | X-ray diffraction | 0.95 | 2000-04-04 | ||||
| 6 | 442D|1|A+ 442D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', BENZIMIDAZOLE DERIVATIVE COMPLEX | X-ray diffraction | 1.6 | 2000-02-02 | ||||
| 7 | 2FII|1|A+ 2FII|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*(UAR)P*CP*GP*CP*G)-3' | Crystal Structure Analysis of the B-DNA Dodecamer CGCGAAT-aU-CGCG, with Incorporated Arabino-Uridin (aU) | X-ray diffraction | 1.24 | 2006-05-23 | ||||
| 8 | 2AC0|1|E+ 2AC0|1|F | 5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3' | Structural Basis of DNA Recognition by p53 Tetramers (complex I) | X-ray diffraction | 1.8 | 2006-07-11 | ||||
| 9 | 2AC0|1|G+ 2AC0|1|H | 5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3' | Structural Basis of DNA Recognition by p53 Tetramers (complex I) | X-ray diffraction | 1.8 | 2006-07-11 | ||||
| 10 | 3FDE|1|C+ 3FDE|1|F | 5'-D(*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP*GP*G)-3' | Mouse UHRF1 SRA domain bound with hemi-methylated CpG DNA, crystal structure in space group C222(1) at 1.4 A resolution | X-ray diffraction | 1.41 | 2009-01-06 | ||||
| 11 | 3FDE|1|D+ 3FDE|1|E | 5'-D(*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP*GP*G)-3' | Mouse UHRF1 SRA domain bound with hemi-methylated CpG DNA, crystal structure in space group C222(1) at 1.4 A resolution | X-ray diffraction | 1.41 | 2009-01-06 | ||||
| 12 | 3EY3|1|A+ 3EY3|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*(USM)P*(USM)P*CP*GP*CP*G)-3' | A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution | X-ray diffraction | 1.25 | 2009-04-28 | ||||
| 13 | 3EY3|1|C+ 3EY3|1|D | 5'-D(*CP*GP*CP*GP*AP*AP*(USM)P*(USM)P*CP*GP*CP*G)-3' | A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution | X-ray diffraction | 1.25 | 2009-04-28 | ||||
| 14 | 2ZKD|1|C+ 2ZKD|1|D | DNA (5'-D(*DCP*DTP*DAP*DCP*DCP*DGP*DGP*DAP*DTP*DTP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DAP*DAP*DTP*DCP*(5CM)P*DGP*DGP*DTP*DAP*DG)-3') | Crystal structure of the SRA domain of mouse Np95 in complex with hemi-methylated CpG DNA | X-ray diffraction | 1.6 | 2008-09-09 | ||||
| 15 | 2ZKD|1|E+ 2ZKD|1|F | DNA (5'-D(*DCP*DTP*DAP*DCP*DCP*DGP*DGP*DAP*DTP*DTP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DAP*DAP*DTP*DCP*(5CM)P*DGP*DGP*DTP*DAP*DG)-3') | Crystal structure of the SRA domain of mouse Np95 in complex with hemi-methylated CpG DNA | X-ray diffraction | 1.6 | 2008-09-09 | ||||
| 16 | 1EI4|1|A+ 1EI4|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TLC)P*(TLC)P*CP*GP*CP*G)-3') | B-DNA DODECAMER CGCGAAT(TLC)CGCG WITH INCORPORATED [3.3.0]BICYCLO-ARABINO-THYMINE-5'-PHOSPHATE | X-ray diffraction | 1.43 | 2000-03-27 | ||||
| 17 | 2FIH|1|A+ 2FIH|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*(UAR)P*TP*CP*GP*CP*G)-3' | Crystal Structure Analysis of the B-DNA Dodecamer CGCGAA-aU-TCGCG, with Incorporated Arabino-Uridine (aU) | X-ray diffraction | 1.13 | 2006-05-23 | ||||
| 18 | 3LPV|1|A+ 3LPV|1|B | 5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3' | X-ray crystal structure of duplex DNA containing a cisplatin 1,2-d(GpG) intrastrand cross-link | X-ray diffraction | 1.77 | 2010-08-11 | ||||
| 19 | 3LPV|1|C+ 3LPV|1|D | 5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3' | X-ray crystal structure of duplex DNA containing a cisplatin 1,2-d(GpG) intrastrand cross-link | X-ray diffraction | 1.77 | 2010-08-11 | ||||
| 20 | 443D|1|A+ 443D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'/ BENZIMIDAZOLE DERIVATIVE COMPLEX | X-ray diffraction | 1.6 | 2000-02-02 | ||||
| 21 | 3IGL|1|B | DNA (5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3') | Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs (p53-DNA complex 1) | X-ray diffraction | 1.8 | 2010-03-31 | ||||
| 22 | 3IGK|1|B | DNA (5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3') | Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs (p53-DNA complex 2) | X-ray diffraction | 1.7 | 2010-03-31 | ||||
| 23 | 3GA6|1|D+ 3GA6|1|F | 5'-D(*GP*CP*CP*CP*TP*GP*UP*GP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*CP*GP*CP*AP*GP*GP*GP*C)-3' | Mth0212 in complex with two DNA helices | X-ray diffraction | 1.898 | 2010-03-09 | ||||
| 24 | 3GA6|1|G+ 3GA6|1|H | 5'-D(*GP*CP*CP*CP*TP*GP*UP*GP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*CP*GP*CP*AP*GP*GP*GP*C)-3' | Mth0212 in complex with two DNA helices | X-ray diffraction | 1.898 | 2010-03-09 | ||||
| 25 | 1N5C|1|A | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(EDC)P*GP*CP*G)-3' | Crystal Structure Analysis of the B-DNA Dodecamer CGCGAATT(ethenoC)GCG | X-ray diffraction | 1.79 | 2003-06-03 | ||||
| 26 | 3MR5|1|T+ 3MR5|1|P | DNA (5'-D(*TP*AP*AP*CP*(TTD)P*AP*TP*GP*AP*CP*GP*A)-3'), DNA (5'-D(*AP*CP*GP*TP*CP*AP*TP*AP*A)-3') | Human DNA polymerase eta - DNA ternary complex with a CPD 1bp upstream of the active site (TT3) | X-ray diffraction | 1.8 | 2010-06-30 | ||||
| 27 | 1R2Z|1|B+ 1R2Z|1|C | 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*TP*CP*CP*AP*(DHU)P*GP*TP*CP*TP*AP*CP*C)-3' | MutM (Fpg) bound to 5,6-dihydrouracil (DHU) containing DNA | X-ray diffraction | 1.63 | 2003-10-14 | ||||
| 28 | 2OFI|1|B+ 2OFI|1|C | 5'-D(*CP*CP*GP*TP*TP*AP*GP*TP*CP*CP*GP*C)-3', 5'-D(*CP*GP*GP*AP*CP*TP*(3DR)P*AP*CP*GP*GP*G)-3' | Crystal Structure of 3-methyladenine DNA Glycosylase I (TAG) bound to DNA/3mA | X-ray diffraction | 1.85 | 2007-05-15 | ||||
| 29 | 477D|1|A+ 477D|1|B | 5'-D(*GP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | CALCIUM FORM OF THE B-DNA DODECAMER GGCGAATTCGCG | X-ray diffraction | 1.7 | 1999-07-19 | ||||
| 30 | 3F8J|1|F+ 3F8J|1|G | 5'-D(*DCP*DCP*DAP*DTP*DGP*(5CM)P*DGP*DCP*DTP*DGP*DAP*DC)-3', 5'-D(*DGP*DTP*DCP*DAP*DGP*DCP*DGP*DCP*DAP*DTP*DGP*DG)-3' | Mouse UHRF1 SRA domain bound with hemi-methylated CpG, crystal structure in space group C222(1) | X-ray diffraction | 1.99 | 2009-01-06 | ||||
| 31 | 3M4A|1|D+ 3M4A|1|E | DNA (5'-D(*GP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*CP*CP*CP*TP*TP*AP*TP*TP*C)-3') | Crystal structure of a bacterial topoisomerase IB in complex with DNA reveals a secondary DNA binding site | X-ray diffraction | 1.65 | 2010-07-14 | ||||
| 32 | 1S2R|1|A+ 1S2R|1|B | 5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3' | A High Resolution Crystal Structure of [d(CGCAAATTTGCG)]2 | X-ray diffraction | 1.53 | 2005-01-04 | ||||
| 33 | 3MR6|1|T+ 3MR6|1|P | DNA (5'-D(*C*AP*TP*CP*AP*(TTD)P*AP*CP*GP*AP*GP*C)-3'), DNA (5'-D(*TP*CP*TP*CP*GP*TP*AP*AP*T)-3') | Human DNA polymerase eta - DNA ternary complex with a CPD 2bp upstream of the active site (TT4) | X-ray diffraction | 1.9 | 2010-06-30 | ||||
| 34 | 2B3E|1|A+ 2B3E|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | Crystal structure of DB819-D(CGCGAATTCGCG)2 complex. | X-ray diffraction | 1.36 | 2005-11-22 | ||||
| 35 | 1VZK|1|A+ 1VZK|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP *CP*G)-3' | A Thiophene Based Diamidine Forms a "Super" AT Binding Minor Groove Agent | X-ray diffraction | 1.77 | 2004-10-25 | ||||
| 36 | 2QEF|1|A+ 2QEF|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(ZDU)P*DCP*(7GU)P*DCP*DG)-3') | X-ray structure of 7-deaza-dG and Z3dU modified duplex CGCGAATXCZCG | X-ray diffraction | 1.6 | 2008-05-06 | ||||
| 37 | 3EY1|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*(USM)P*(USM)P*CP*GP*CP*G)-3' | A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution | X-ray diffraction | 1.6 | 2009-04-28 | ||||
| 38 | 455D|1|A+ 455D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*(SSP)AP*TP*TP*CP*GP*CP*G)-3') | A6/A18 INTER-STRAND DITHIOBIS(PROPANE)-CROSSLINKED DODECAMER (CGCGAATTCGCG)2 | X-ray diffraction | 1.43 | 1999-10-08 | ||||
| 39 | 3I8D|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*(DFT)P*CP*GP*CP*G)-3' | The Pairing Geometry of the Hydrophobic Thymine Analog 2,4-Difluorotoluene in Duplex DNA as Analyzed by X-ray Crystallography | X-ray diffraction | 1.61 | 2009-09-01 | ||||
| 40 | 3I8D|1|D | 5'-D(*CP*GP*CP*GP*AP*AP*TP*(DFT)P*CP*GP*CP*G)-3' | The Pairing Geometry of the Hydrophobic Thymine Analog 2,4-Difluorotoluene in Duplex DNA as Analyzed by X-ray Crystallography | X-ray diffraction | 1.61 | 2009-09-01 | ||||
| 41 | 1OE4|1|E+ 1OE4|1|F | 5'-D(*CP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*G)-3', 5'-D(*CP*GP*GP*AP*CP*TP*3DR*AP*CP*GP*GP*G)-3' | Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase | X-ray diffraction | 2 | 2003-07-11 | ||||
| 42 | 2E52|1|I+ 2E52|1|J | DNA (5'-D(*DGP*DCP*DCP*DAP*DAP*DGP*DCP*DTP*DTP*DGP*DGP*DC)-3') | Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA at 2.0 angstrom resolution | X-ray diffraction | 2 | 2007-12-18 | ||||
| 43 | 2AHI|1|E+ 2AHI|1|F | 5'-D(*CP*GP*GP*AP*CP*AP*TP*GP*TP*CP*CP*G)-3' | Structural Basis of DNA Recognition by p53 Tetramers (complex III) | X-ray diffraction | 1.85 | 2006-07-11 | ||||
| 44 | 2AHI|1|G+ 2AHI|1|H | 5'-D(*CP*GP*GP*AP*CP*AP*TP*GP*TP*CP*CP*G)-3' | Structural Basis of DNA Recognition by p53 Tetramers (complex III) | X-ray diffraction | 1.85 | 2006-07-11 | ||||
| 45 | 3HT3|1|C+ 3HT3|1|B | 5'-D(*AP*CP*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3' | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP | X-ray diffraction | 1.7 | 2010-07-14 | ||||
| 46 | 3HT3|1|F+ 3HT3|1|E | 5'-D(*AP*CP*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3' | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP | X-ray diffraction | 1.7 | 2010-07-14 | ||||
| 47 | 3OIE|1|A+ 3OIE|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | Crystal structure of the DB1880-D(CGCGAATTCGCG)2 complex | X-ray diffraction | 1.9 | 2011-01-19 | ||||
| 48 | 3HTS|1|A | 5'-D(*GP*GP*TP*TP*CP*TP*AP*GP*AP*AP*CP*C)-3' | HEAT SHOCK TRANSCRIPTION FACTOR/DNA COMPLEX | X-ray diffraction | 1.75 | 1999-04-29 | ||||
| 49 | 3HW8|1|B+ 3HW8|1|C+ 3HW8|1|D | 5'-D(*CP*GP*GP*CP*CP*AP*AP*TP*AP*CP*TP*G)-3', 5'-D(*CP*AP*GP*TP*AP*T)-3', 5'-D(P*GP*CP*CP*G)-3' | ternary complex of DNA polymerase lambda of a two nucleotide gapped DNA substrate with a C in the scrunch site | X-ray diffraction | 1.95 | 2009-08-25 | ||||
| 50 | 1Z5T|1|A+ 1Z5T|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*(ZDU)P*(ZDU)P*CP*GP*CP*G)-3' | Crystal Structure of [d(CGCGAA(Z3dU)(Z3dU)CGCG)]2, Z3dU:5-(3-aminopropyl)-2'-deoxyuridine, in presence of thallium I. | X-ray diffraction | 1.6 | 2005-07-26 | ||||
| 51 | 3D0P|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DCP*DG)-3') | Insights into RNA/DNA hybrid recognition and processing by RNase H from the crystal structure of a non-specific enzyme-dsDNA complex | X-ray diffraction | 1.8 | 2008-10-07 | ||||
| 52 | 3D0P|1|D | DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DCP*DG)-3') | Insights into RNA/DNA hybrid recognition and processing by RNase H from the crystal structure of a non-specific enzyme-dsDNA complex | X-ray diffraction | 1.8 | 2008-10-07 | ||||
| 53 | 3D0A|1|E+ 3D0A|1|F | DNA (5'-D(*DCP*DGP*DGP*DGP*DCP*DAP*DTP*DGP*DCP*DCP*DCP*DG)-3') | Human p53 core domain with hot spot mutation R249S and second site suppressor mutation H168R in sequence-specific complex with DNA | X-ray diffraction | 1.8 | 2009-01-20 | ||||
| 54 | 3D0A|1|G+ 3D0A|1|H | DNA (5'-D(*DCP*DGP*DGP*DGP*DCP*DAP*DTP*DGP*DCP*DCP*DCP*DG)-3') | Human p53 core domain with hot spot mutation R249S and second site suppressor mutation H168R in sequence-specific complex with DNA | X-ray diffraction | 1.8 | 2009-01-20 | ||||
| 55 | 3HP6|1|C+ 3HP6|1|B | 5'-D(*AP*CP*GP*CP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DDG))-3' | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch | X-ray diffraction | 1.81 | 2010-06-23 | ||||
| 56 | 3HP6|1|F+ 3HP6|1|E | 5'-D(*AP*CP*GP*CP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DDG))-3' | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch | X-ray diffraction | 1.81 | 2010-06-23 | ||||
| 57 | 3EZ5|1|C+ 3EZ5|1|B | 5'-D(*DAP*DTP*DTP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DG)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DG)-3' | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form). | X-ray diffraction | 1.9 | 2009-11-10 | ||||
| 58 | 3EZ5|1|F+ 3EZ5|1|E | 5'-D(*DAP*DTP*DTP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DG)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DG)-3' | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form). | X-ray diffraction | 1.9 | 2009-11-10 | ||||
| 59 | 2RF3|1|A+ 2RF3|1|B | 5'-d(CGCG(TCY)ATTCGCG)-3' | Crystal Structure of Tricyclo-DNA: An Unusual Compensatory Change of Two Adjacent Backbone Torsion Angles | X-ray diffraction | 1.75 | 2008-02-12 | ||||
| 60 | 3QMD|1|B | DNA (5'-D(*GP*CP*CP*AP*AP*CP*GP*AP*TP*GP*GP*C)-3') | Structural Basis of Selective Binding of Nonmethylated CpG Islands by the CXXC Domain of CFP1 | X-ray diffraction | 1.9 | 2011-02-23 | ||||
| 61 | 3QMD|1|C | DNA (5'-D(*GP*CP*CP*AP*TP*CP*GP*TP*TP*GP*GP*C)-3') | Structural Basis of Selective Binding of Nonmethylated CpG Islands by the CXXC Domain of CFP1 | X-ray diffraction | 1.9 | 2011-02-23 | ||||
| 62 | 3HWT|1|T+ 3HWT|1|P+ 3HWT|1|D | 5'-D(P*GP*CP*CP*G)-3', 5'-D(*CP*AP*GP*TP*AP*(2DT))-3', 5'-D(*CP*GP*GP*CP*AP*AP*AP*TP*AP*CP*TP*G)-3' | Ternary complex of DNA polymerase lambda bound to a two nucleotide gapped DNA substrate with a scrunched dA | X-ray diffraction | 1.95 | 2009-08-25 | ||||
| 63 | 1M6F|1|A+ 1M6F|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | Strong Binding in the DNA Minor Groove by an Aromatic Diamidine With a Shape That Does Not Match the Curvature of the Groove | X-ray diffraction | 1.78 | 2002-11-15 | ||||
| 64 | 2QEG|1|A+ 2QEG|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*(7GU)P*DCP*DG)-3') | B-DNA with 7-deaza-dG modification | X-ray diffraction | 1.6 | 2008-05-06 | ||||
| 65 | 3EXJ|1|D+ 3EXJ|1|C | 5'-D(*DTP*DTP*DGP*DAP*DGP*DCP*DAP*DTP*DGP*DCP*DTP*DC)-3', 5'-D(P*DGP*DAP*DGP*DCP*DAP*DTP*DGP*DCP*DTP*DCP*DA)-3' | Crystal Structure of a p53 Core Tetramer Bound to DNA | X-ray diffraction | 2 | 2008-12-16 | ||||
| 66 | 2GVR|1|A+ 2GVR|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | Crystal structure of the berenil-D(CGCGAATTCGCG)2 complex at 1.65 A resolution. | X-ray diffraction | 1.65 | 2007-06-19 | ||||
| 67 | 428D|1|A+ 428D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | STRUCTURE OF THE POTASSIUM FORM OF CGCGAATTCGCG: DNA DEFORMATION BY ELECTROSTATIC COLLAPSE AROUND SMALL CATIONS | X-ray diffraction | 1.75 | 1998-10-09 | ||||
| 68 | 1ZPI|1|A+ 1ZPI|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | Crystal structure analysis of the minor groove binding quinolinium quaternary salt SN 8224 complexed with CGCGAATTCGCG | X-ray diffraction | 1.6 | 2005-10-11 | ||||
| 69 | 2B0K|1|A+ 2B0K|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | Crystal structure of the DB921-D(CGCGAATTCGCG)2 complex. | X-ray diffraction | 1.64 | 2005-11-22 | ||||
| 70 | 2I5A|1|A+ 2I5A|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | Crystal structure of a DB1055-D(CGCGAATTCGCG)2 complex | X-ray diffraction | 1.65 | 2008-04-08 | ||||
| 71 | 2I2I|1|A+ 2I2I|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | Crystal structure of the DB293-D(CGCGAATTCGCG)2 complex. | X-ray diffraction | 1.63 | 2007-07-31 | ||||
| 72 | 2P8D|1|A | 5'-D(*DCP*DGP*DCP*DGP*DAP*(XAR)P*DTP*DTP*DCP*DGP*DCP*DG)-3' | The Structure of the Dickerson Sequence with an Incorporated CeNA Residue | X-ray diffraction | 1.9 | 2008-02-05 | ||||
| 73 | 2P8D|1|B | 5'-D(*DCP*DGP*DCP*DGP*DAP*(XAR)P*DTP*DTP*DCP*DGP*DCP*DG)-3' | The Structure of the Dickerson Sequence with an Incorporated CeNA Residue | X-ray diffraction | 1.9 | 2008-02-05 | ||||
| 74 | 2GYX|1|A+ 2GYX|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | Crystal structure of DB884- D(CGCGAATTCGCG)2 complex at 1.86 A resolution. | X-ray diffraction | 1.86 | 2007-05-22 | ||||
| 75 | 1ZPH|1|A+ 1ZPH|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | Crystal structure analysis of the minor groove binding quinolinium quaternary salt SN 8315 complexed with CGCGAATTCGCG | X-ray diffraction | 1.8 | 2005-10-11 | ||||
| 76 | 436D|1|A+ 436D|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3' | THE DICKERSON-DREW B-DNA DODECAMER REVISITED-AT ATOMIC RESOLUTION | X-ray diffraction | 1.1 | 1998-11-25 | ||||
| 77 | 2DYW|1|A+ 2DYW|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | A Backbone binding DNA complex | X-ray diffraction | 1.13 | 2007-01-02 | ||||
| 78 | 460D|1|A+ 460D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3') | A "HYDRAT-ION SPINE" IN A B-DNA MINOR GROOVE | X-ray diffraction | 1.2 | 1999-04-08 | ||||
| 79 | 1JGR|1|A+ 1JGR|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | Crystal Structure Analysis of the B-DNA Dodecamer CGCGAATTCGCG with Thallium Ions. | X-ray diffraction | 1.2 | 2001-09-05 | ||||
| 80 | 2VLA|1|L+ 2VLA|1|M | 5'-D(*GP*GP*TP*AP*CP*CP*CP*GP*TP*GP *GP*A)-3', 5'-D(*TP*CP*CP*AP*CP*GP*GP*GP*TP*AP *CP*C)-3' | Crystal structure of restriction endonuclease BpuJI recognition domain in complex with cognate DNA | X-ray diffraction | 1.3 | 2008-05-06 | ||||
| 81 | 403D|1|A+ 403D|1|B | DNA (5'-D(*CP*GP*CP*(IGU)P*AP*AP*TP*TP*TP*GP*CP*G)-3') | 5'-D(*CP*GP*CP*(HYD)AP*AP*AP*TP*TP*TP*GP*CP*G)-3', 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE | X-ray diffraction | 1.4 | 1998-07-06 | ||||
| 82 | 355D|1|A+ 355D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | synthetic construct | THE B-DNA DODECAMER AT HIGH RESOLUTION | X-ray diffraction | 1.4 | 1997-10-13 | |||
| 83 | 2EA0|1|B+ 2EA0|1|C | 5'-D(P*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*G)-3', 5'-D(P*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' | Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli in complex with AP-site containing DNA substrate | X-ray diffraction | 1.4 | 2008-02-26 | ||||
| 84 | 463D|1|A+ 463D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | CALCIUM FORM OF D(CGCGAATTCGCG)2 | X-ray diffraction | 1.45 | 1999-10-08 | ||||
| 85 | 2DPB|1|A+ 2DPB|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DUP*DCP*DGP*DCP*DG)-3') | Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine | X-ray diffraction | 1.5 | 2007-04-17 | ||||
| 86 | 461D|1|A+ 461D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3') | A "HYDRAT-ION SPINE" IN A B-DNA MINOR GROOVE | X-ray diffraction | 1.5 | 1999-04-08 | ||||
| 87 | 3JXY|1|B+ 3JXY|1|C | DNA (5'-D(*CP*GP*GP*AP*CP*TP*GP*AP*CP*GP*GP*G)-3'), DNA (5'-D(*CP*CP*CP*GP*TP*TP*AP*GP*TP*CP*CP*G)-3') | Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing a GT Mismatch | X-ray diffraction | 1.5 | 2010-09-22 | ||||
| 88 | 2DPC|1|A+ 2DPC|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(OMU)P*DCP*DGP*DCP*DG)-3') | Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine | X-ray diffraction | 1.55 | 2007-04-17 | ||||
| 89 | 388D|1|A+ 388D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*(TAF)P*CP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITY | X-ray diffraction | 1.55 | 1998-05-05 | ||||
| 90 | 2DP7|1|A+ 2DP7|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DUP*DCP*DGP*DCP*DG)-3') | Crystal Structure of D(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine | X-ray diffraction | 1.55 | 2007-04-17 | ||||
| 91 | 389D|1|A+ 389D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITY | X-ray diffraction | 1.55 | 1998-05-05 | ||||
| 92 | 1G8N|1|A+ 1G8N|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*(UFR)P*CP*GP*CP*G)-3' | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNA | X-ray diffraction | 1.55 | 2001-02-05 | ||||
| 93 | 1G75|1|A+ 1G75|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*(UFR)P*CP*GP*CP*G)-3' | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG): 5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNA | X-ray diffraction | 1.57 | 2001-02-05 | ||||
| 94 | 1I3T|1|A+ 1I3T|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(C45)P*GP*CP*GP)-3' | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATT(MO4)CGCG): THE WATSON-CRICK TYPE AND WOBBLE N4-METHOXYCYTIDINE/GUANOSINE BASE PAIRS IN B-DNA | X-ray diffraction | 1.6 | 2001-09-14 | ||||
| 95 | 1EDR|1|A+ 1EDR|1|B | 5'-D(*CP*GP*CP*GP*(A47)AP*AP*TP*TP*CP*GP*CP*G)-3' | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG) AT 1.6 ANGSTROM | X-ray diffraction | 1.6 | 2000-02-16 | ||||
| 96 | 1J8L|1|A+ 1J8L|1|B | DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*(C45)P*GP*CP*G)-3') | Molecular and Crystal Structure of D(CGCAAATTMO4CGCG): the Watson-Crick Type N4-Methoxycytidine/Adenosine Base Pair in B-DNA | X-ray diffraction | 1.6 | 2001-09-28 | ||||
| 97 | 456D|1|A+ 456D|1|B | DNA (5'-D(*CP*GP*CP*GP*(A47)P*AP*TP*CP*CP*GP*CP*G)-3') | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATCCGCG): THE WATSON-CRICK TYPE N6-METHOXYADENOSINE/CYTIDINE BASE-PAIRS IN B-DNA | X-ray diffraction | 1.6 | 2000-01-01 | ||||
| 98 | 3JX7|1|B+ 3JX7|1|C | DNA (5'-D(*CP*GP*GP*AP*CP*TP*(DZM)P*AP*CP*GP*GP*G)-3'), DNA (5'-D(*CP*CP*CP*GP*TP*TP*AP*GP*TP*CP*CP*G)-3') | Bacillus cereus alkylpurine DNA glycosylase AlkD bound to DNA containing a 3-METHYLADENINE analog | X-ray diffraction | 1.6 | 2010-09-22 | ||||
| 99 | 1VE8|1|A+ 1VE8|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5FC)P*GP*CP*G)-3' | X-Ray analyses of oligonucleotides containing 5-formylcytosine, suggesting a structural reason for codon-anticodon recognition of mitochondrial tRNA-Met; Part 1, d(CGCGAATT(f5C)GCG) | X-ray diffraction | 1.65 | 2005-06-28 | ||||
| 100 | 2C7P|1|C+ 2C7P|1|D | 5'-D(*G*GP*AP*TP*GP*(5CM*2PR)*CP*TP*GP*AP*C)-3', 5'-D(*G*TP*CP*AP*GP*CP*GP*CP*AP*TP*CP*C)-3' | synthetic construct | HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine opposite to the target base (GCGC:GMPC) and SAH | X-ray diffraction | 1.7 | 2005-12-14 | |||
| 101 | 2O4A|1|B+ 2O4A|1|C | DNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3') | Crystal Structure of the N-terminal CUT Domain of SATB1 Bound to Matrix Attachment Region DNA | X-ray diffraction | 1.75 | 2007-08-14 | ||||
| 102 | 1EHV|1|A | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | A NEW CRYSTAL STRUCTURE FOR THE DODECAMER C-G-C-G-A-A-T-T-C-G-C-G: SYMMETRY EFFECTS ON SEQUENCE-DEPENDENT DNA STRUCTURE | X-ray diffraction | 1.8 | 2000-07-14 | ||||
| 103 | 1D3R|1|A+ 1D3R|1|B | DNA (5'-D(*CP*(BRU)P*CP*CP*(BRU)P*CP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*CP*GP*GP*AP*G)-3') | CRYSTAL STRUCTURE OF TRIPLEX DNA | X-ray diffraction | 1.8 | 2000-01-01 | ||||
| 104 | 1G8V|1|A+ 1G8V|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*(UFR)P*CP*GP*CP*G)-3' | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNA | X-ray diffraction | 1.8 | 2001-02-05 | ||||
| 105 | 453D|1|A+ 453D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'-BENZIMIDAZOLE COMPLEX | X-ray diffraction | 1.8 | 2000-05-15 | ||||
| 106 | 3BAM|1|C+ 3BAM|1|E+ 3BAM|1|D | DNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3'), DNA (5'-D(P*GP*AP*TP*CP*CP*AP*TP*A)-3'), DNA (5'-D(*TP*AP*TP*G)-3') | RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND MANGANESE IONS (POST-REACTIVE COMPLEX) | X-ray diffraction | 1.8 | 1999-01-13 | ||||
| 107 | 1D3R|1|C+ 1D3R|1|D | DNA (5'-D(*CP*(BRU)P*CP*CP*(BRU)P*CP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*CP*GP*GP*AP*G)-3') | CRYSTAL STRUCTURE OF TRIPLEX DNA | X-ray diffraction | 1.8 | 2000-01-01 | ||||
| 108 | 1DOU|1|A+ 1DOU|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | MONOVALENT CATIONS SEQUESTER WITHIN THE A-TRACT MINOR GROOVE OF [D(CGCGAATTCGCG)]2 | X-ray diffraction | 1.82 | 1999-12-27 | ||||
| 109 | 360D|1|A+ 360D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | synthetic construct | STRUCTURE OF 2,5-BIS{[4-(N-ETHYLAMIDINO)PHENYL]}FURAN COMPLEXED TO 5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3'. A MINOR GROOVE DRUG COMPLEX, SHOWING PATTERNS OF GROOVE HYDRATION | X-ray diffraction | 1.85 | 1998-07-16 | |||
| 110 | 1G8U|1|A+ 1G8U|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*(UFR)P*CP*GP*CP*G)-3' | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNA | X-ray diffraction | 1.85 | 2001-02-05 | ||||
| 111 | 2OPF|1|B+ 2OPF|1|C | 5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*G)-3', 5'-D(P*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' | Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (R252A) in complex with AP-site containing DNA substrate | X-ray diffraction | 1.85 | 2008-02-26 | ||||
| 112 | 1BNA|1|A+ 1BNA|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | STRUCTURE OF A B-DNA DODECAMER. CONFORMATION AND DYNAMICS | X-ray diffraction | 1.9 | 1981-05-21 | ||||
| 113 | 1FMS|1|A+ 1FMS|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | Structure of complex between cyclohexyl-bis-furamidine and d(CGCGAATTCGCG) | X-ray diffraction | 1.9 | 2000-09-11 | ||||
| 114 | 7BNA|1|A+ 7BNA|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | ANISOTROPIC THERMAL-PARAMETER REFINEMENT OF THE DNA DODECAMER CGCGAATTCGCG BY THE SEGMENTED RIGID-BODY METHOD | X-ray diffraction | 1.9 | 1985-07-17 | ||||
| 115 | 9BNA|1|A+ 9BNA|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | RE-REFINEMENT OF THE B-DODECAMER D(CGCGAATTCGCG) WITH A COMPARATIVE ANALYSIS OF THE SOLVENT IN IT AND IN THE Z-HEXAMER D(5BRCG5BRCG5BRCG) | X-ray diffraction | 1.9 | 1991-04-15 | ||||
| 116 | 1D45|1|A+ 1D45|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-25 DEGREES C, PIPERAZINE DOWN | X-ray diffraction | 1.9 | 1992-04-15 | ||||
| 117 | 2C7R|1|C+ 2C7R|1|D | 5'-D(*G*GP*AP*TP*GP*(5CM)*GP*CP*TP*GP*AP*C)-3', 5'-D(*G*TP*CP*AP*GP*(2PR)*GP*CP*AP*TP*CP*C)-3' | synthetic construct | HhaI DNA methyltransferase (T250G mutant) complex with oligonucleotide containing 2-aminopurine as a target base (GPGC:GMGC) and SAH | X-ray diffraction | 1.9 | 2005-12-14 | |||
| 118 | 3EEO|1|C+ 3EEO|1|D | 5'-D(P*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3', 5'-D(P*DGP*DTP*DCP*DAP*DGP*(PDI)P*DGP*DCP*DAP*DTP*DGP*DG)-3' | M. HhaI co-crystallized with synthetic dsDNA containing a propane diol in place of the deoxycytidine residue targeted for methylation. | X-ray diffraction | 1.94 | 2010-03-02 | ||||
| 119 | 1D63|1|A+ 1D63|1|B | DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF A BERENIL-D(CGCAAATTTGCG) COMPLEX; AN EXAMPLE OF DRUG-DNA RECOGNITION BASED ON SEQUENCE-DEPENDENT STRUCTURAL FEATURES | X-ray diffraction | 2 | 1993-01-15 | ||||
| 120 | 1FTD|1|A+ 1FTD|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'-SYMMETRIC BIS-BENZIMIDAZOLE COMPLEX | X-ray diffraction | 2 | 2001-02-26 | ||||
| 121 | 4DNB|1|A+ 4DNB|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*(6MA)P*TP*TP*CP*GP*CP*G)-3') | METHYLATION OF THE ECORI RECOGNITION SITE DOES NOT ALTER DNA CONFORMATION. THE CRYSTAL STRUCTURE OF D(CGCGAM6ATTCGCG) AT 2.0 ANGSTROMS RESOLUTION | X-ray diffraction | 2 | 1989-01-09 | ||||
| 122 | 1D46|1|A+ 1D46|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-100 DEGREES C, PIPERAZINE DOWN | X-ray diffraction | 2 | 1992-04-15 | ||||
| 123 | 109D|1|A+ 109D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | VARIABILITY IN DNA MINOR GROOVE WIDTH RECOGNISED BY LIGAND BINDING: THE CRYSTAL STRUCTURE OF A BIS-BENZIMIDAZOLE COMPOUND BOUND TO THE DNA DUPLEX D(CGCGAATTCGCG)2 | X-ray diffraction | 2 | 1995-05-08 | ||||
| 124 | 1D44|1|A+ 1D44|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE DOWN | X-ray diffraction | 2 | 1992-04-15 | ||||
| 125 | 1FMQ|1|A+ 1FMQ|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | Cyclo-butyl-bis-furamidine complexed with dCGCGAATTCGCG | X-ray diffraction | 2 | 2000-09-11 | ||||
| 126 | 2D47|1|A+ 2D47|1|B | DNA (5'-D(*CP*CP*CP*CP*CP*GP*CP*GP*GP*GP*GP*G)-3') | MOLECULAR STRUCTURE OF A COMPLETE TURN OF A-DNA | X-ray diffraction | 2 | 1991-10-02 | ||||
| 127 | 457D|1|A+ 457D|1|B | DNA (5'-D(*CP*GP*CP*GP*(A47)P*AP*TP*TP*CP*GP*CP*G)-3') | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG): N6-METHOXYADENOSINE/ THYMIDINE BASE-PAIRS IN B-DNA | X-ray diffraction | 2 | 2000-01-01 | ||||
| 128 | 127D|1|A+ 127D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') COMPLEXED WITH HOECHST 33258 | X-ray diffraction | 2 | 1994-01-15 | ||||
| 129 | 1D43|1|A+ 1D43|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE UP | X-ray diffraction | 2 | 1992-04-15 | ||||
| 130 | 267D|1|A+ 267D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5CM)P*GP*CP*G)-3') | STRUCTURAL STUDIES ON NUCLEIC ACIDS | X-ray diffraction | 2 | 1996-08-28 | ||||
| 131 | 1D27|1|A+ 1D27|1|B | DNA (5'-D(*CP*GP*CP*(6OG)P*AP*AP*TP*TP*TP*GP*CP*G)-3') | HIGH-RESOLUTION STRUCTURE OF A MUTAGENIC LESION IN DNA | X-ray diffraction | 2 | 1992-04-07 | ||||
| 132 | 2O49|1|B+ 2O49|1|C | DNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3') | Crystal Structure of the N-terminal CUT domain of SATB1 Bound to Matrix Attachment Region DNA | X-ray diffraction | 2 | 2007-08-14 | ||||
| 133 | 2BAM|1|C+ 2BAM|1|D | DNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3') | RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND CALCIUM IONS (PRE-REACTIVE COMPLEX). | X-ray diffraction | 2 | 1999-10-31 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1R2Z|1|B+1R2Z|1|C | MutM (Fpg) bound to 5,6-dihydrouracil (DHU) containing DNA | X-RAY DIFFRACTION | 1.63 | 12 | double helix,structure | enzyme,hydrolase |
| 2 | 2D47|1|A+2D47|1|B | MOLECULAR STRUCTURE OF A COMPLETE TURN OF A-DNA | X-RAY DIFFRACTION | 2 | 12 | A-form double helix,double helix,structure | |
| 3 | 3LPV|1|A+3LPV|1|B | X-ray crystal structure of duplex DNA containing a cisplatin 1,2-d(GpG) intrastrand cross-link | X-RAY DIFFRACTION | 1.77 | 12 | DNA dodecamer,double helix,feature,structure | |
| 4 | 3LPV|1|C+3LPV|1|D | X-ray crystal structure of duplex DNA containing a cisplatin 1,2-d(GpG) intrastrand cross-link | X-RAY DIFFRACTION | 1.77 | 12 | DNA dodecamer,double helix,feature,structure | |
| 5 | 3IGL|1|B | Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs (p53-DNA complex 1) | X-RAY DIFFRACTION | 1.8 | 12 | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription | |
| 6 | 3IGK|1|B | Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs (p53-DNA complex 2) | X-RAY DIFFRACTION | 1.7 | 12 | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription | |
| 7 | 2AC0|1|E+2AC0|1|F | Structural Basis of DNA Recognition by p53 Tetramers (complex I) | X-RAY DIFFRACTION | 1.8 | 12 | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription | |
| 8 | 3D0A|1|E+3D0A|1|F | Human p53 core domain with hot spot mutation R249S and second site suppressor mutation H168R in sequence-specific complex with DNA | X-RAY DIFFRACTION | 1.8 | 12 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 9 | 2EA0|1|B+2EA0|1|C | Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli in complex with AP-site containing DNA substrate | X-RAY DIFFRACTION | 1.4 | 12 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 10 | 2OPF|1|B+2OPF|1|C | Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (R252A) in complex with AP-site containing DNA substrate | X-RAY DIFFRACTION | 1.85 | 12 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 11 | 3JX7|1|B+3JX7|1|C | Bacillus cereus alkylpurine DNA glycosylase AlkD bound to DNA containing a 3-METHYLADENINE analog | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 12 | 3JXY|1|B+3JXY|1|C | Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing a GT Mismatch | X-RAY DIFFRACTION | 1.5 | 12 | double helix,feature,mispair,structure | enzyme,hydrolase |
| 13 | 2OFI|1|B+2OFI|1|C | Crystal Structure of 3-methyladenine DNA Glycosylase I (TAG) bound to DNA/3mA | X-RAY DIFFRACTION | 1.85 | 12 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 14 | 2ZKD|1|C+2ZKD|1|D | Crystal structure of the SRA domain of mouse Np95 in complex with hemi-methylated CpG DNA | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,double helix,structure | enzyme,ligase |
| 15 | 2ZKD|1|E+2ZKD|1|F | Crystal structure of the SRA domain of mouse Np95 in complex with hemi-methylated CpG DNA | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,double helix,structure | enzyme,ligase |
| 16 | 1DC0|1|A+1DC0|1|B | CRYSTAL STRUCTURE OF AN A/B-DNA INTERMEDIATE CATGGGCCCATG | X-RAY DIFFRACTION | 1.3 | 12 | A-form double helix,double helix,structure | |
| 17 | 3EY1|1|B | A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | enzyme,hydrolase,nuclease |
| 18 | 3EY3|1|A+3EY3|1|B | A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution | X-RAY DIFFRACTION | 1.25 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 19 | 3EY3|1|C+3EY3|1|D | A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution | X-RAY DIFFRACTION | 1.25 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 20 | 3I8D|1|B | The Pairing Geometry of the Hydrophobic Thymine Analog 2,4-Difluorotoluene in Duplex DNA as Analyzed by X-ray Crystallography | X-RAY DIFFRACTION | 1.61 | 12 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 21 | 3D0P|1|B | Insights into RNA/DNA hybrid recognition and processing by RNase H from the crystal structure of a non-specific enzyme-dsDNA complex | X-RAY DIFFRACTION | 1.8 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | enzyme,hydrolase,nuclease |
| 22 | 3I8D|1|D | The Pairing Geometry of the Hydrophobic Thymine Analog 2,4-Difluorotoluene in Duplex DNA as Analyzed by X-ray Crystallography | X-RAY DIFFRACTION | 1.61 | 12 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 23 | 3D0P|1|D | Insights into RNA/DNA hybrid recognition and processing by RNase H from the crystal structure of a non-specific enzyme-dsDNA complex | X-RAY DIFFRACTION | 1.8 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | enzyme,hydrolase,nuclease |
| 24 | 3GA6|1|G+3GA6|1|H | Mth0212 in complex with two DNA helices | X-RAY DIFFRACTION | 1.898 | 12 | double helix,feature,mispair,structure | enzyme,hydrolase,nuclease |
| 25 | 1G8V|1|A+1G8V|1|B | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNA | X-RAY DIFFRACTION | 1.8 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 26 | 1G8U|1|A+1G8U|1|B | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNA | X-RAY DIFFRACTION | 1.85 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 27 | 1VE8|1|A+1VE8|1|B | X-Ray analyses of oligonucleotides containing 5-formylcytosine, suggesting a structural reason for codon-anticodon recognition of mitochondrial tRNA-Met; Part 1, d(CGCGAATT(f5C)GCG) | X-RAY DIFFRACTION | 1.65 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 28 | 3OIE|1|A+3OIE|1|B | Crystal structure of the DB1880-D(CGCGAATTCGCG)2 complex | X-RAY DIFFRACTION | 1.9 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 29 | 1S2R|1|A+1S2R|1|B | A High Resolution Crystal Structure of [d(CGCAAATTTGCG)]2 | X-RAY DIFFRACTION | 1.53 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 30 | 2DYW|1|A+2DYW|1|B | A Backbone binding DNA complex | X-RAY DIFFRACTION | 1.13 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 31 | 1Z5T|1|A+1Z5T|1|B | Crystal Structure of [d(CGCGAA(Z3dU)(Z3dU)CGCG)]2, Z3dU:5-(3-aminopropyl)-2'-deoxyuridine, in presence of thallium I. | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 32 | 2QEF|1|A+2QEF|1|B | X-ray structure of 7-deaza-dG and Z3dU modified duplex CGCGAATXCZCG | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 33 | 2QEG|1|A+2QEG|1|B | B-DNA with 7-deaza-dG modification | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 34 | 267D|1|A+267D|1|B | STRUCTURAL STUDIES ON NUCLEIC ACIDS | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 35 | 2GYX|1|A+2GYX|1|B | Crystal structure of DB884- D(CGCGAATTCGCG)2 complex at 1.86 A resolution. | X-RAY DIFFRACTION | 1.86 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 36 | 7BNA|1|A+7BNA|1|B | ANISOTROPIC THERMAL-PARAMETER REFINEMENT OF THE DNA DODECAMER CGCGAATTCGCG BY THE SEGMENTED RIGID-BODY METHOD | X-RAY DIFFRACTION | 1.9 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 37 | 1BNA|1|A+1BNA|1|B | STRUCTURE OF A B-DNA DODECAMER. CONFORMATION AND DYNAMICS | X-RAY DIFFRACTION | 1.9 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 38 | 9BNA|1|A+9BNA|1|B | RE-REFINEMENT OF THE B-DODECAMER D(CGCGAATTCGCG) WITH A COMPARATIVE ANALYSIS OF THE SOLVENT IN IT AND IN THE Z-HEXAMER D(5BRCG5BRCG5BRCG) | X-RAY DIFFRACTION | 1.9 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 39 | 1DOU|1|A+1DOU|1|B | MONOVALENT CATIONS SEQUESTER WITHIN THE A-TRACT MINOR GROOVE OF [D(CGCGAATTCGCG)]2 | X-RAY DIFFRACTION | 1.82 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 40 | 428D|1|A+428D|1|B | STRUCTURE OF THE POTASSIUM FORM OF CGCGAATTCGCG: DNA DEFORMATION BY ELECTROSTATIC COLLAPSE AROUND SMALL CATIONS | X-RAY DIFFRACTION | 1.75 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 41 | 355D|1|A+355D|1|B | THE B-DNA DODECAMER AT HIGH RESOLUTION | X-RAY DIFFRACTION | 1.4 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 42 | 1FQ2|1|A+1FQ2|1|B | CRYSTAL STRUCTURE ANALYSIS OF THE POTASSIUM FORM OF B-DNA DODECAMER CGCGAATTCGCG | X-RAY DIFFRACTION | 1.2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 43 | 1JGR|1|A+1JGR|1|B | Crystal Structure Analysis of the B-DNA Dodecamer CGCGAATTCGCG with Thallium Ions. | X-RAY DIFFRACTION | 1.2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 44 | 456D|1|A+456D|1|B | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATCCGCG): THE WATSON-CRICK TYPE N6-METHOXYADENOSINE/CYTIDINE BASE-PAIRS IN B-DNA | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,double helix,structure | |
| 45 | 389D|1|A+389D|1|B | CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITY | X-RAY DIFFRACTION | 1.55 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 46 | 1J8L|1|A+1J8L|1|B | Molecular and Crystal Structure of D(CGCAAATTMO4CGCG): the Watson-Crick Type N4-Methoxycytidine/Adenosine Base Pair in B-DNA | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,double helix,structure | |
| 47 | 1EI4|1|A+1EI4|1|B | B-DNA DODECAMER CGCGAAT(TLC)CGCG WITH INCORPORATED [3.3.0]BICYCLO-ARABINO-THYMINE-5'-PHOSPHATE | X-RAY DIFFRACTION | 1.43 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 48 | 1DPN|1|A+1DPN|1|B | B-DODECAMER CGCGAA(TAF)TCGCG WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE | X-RAY DIFFRACTION | 0.95 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 49 | 436D|1|A+436D|1|B | THE DICKERSON-DREW B-DNA DODECAMER REVISITED-AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 1.1 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 50 | 457D|1|A+457D|1|B | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG): N6-METHOXYADENOSINE/ THYMIDINE BASE-PAIRS IN B-DNA | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 51 | 1EDR|1|A+1EDR|1|B | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG) AT 1.6 ANGSTROM | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 52 | 2FIH|1|A+2FIH|1|B | Crystal Structure Analysis of the B-DNA Dodecamer CGCGAA-aU-TCGCG, with Incorporated Arabino-Uridine (aU) | X-RAY DIFFRACTION | 1.13 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 53 | 1N1O|1|A+1N1O|1|B | Crystal Structure of a B-form DNA Duplex Containing (L)-alpha-threofuranosyl (3'-2') Nucleosides: A Four-Carbon Sugar is Easily Accommodated into the Backbone of DNA | X-RAY DIFFRACTION | 1.2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 54 | 1VZK|1|A+1VZK|1|B | A Thiophene Based Diamidine Forms a "Super" AT Binding Minor Groove Agent | X-RAY DIFFRACTION | 1.77 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 55 | 1FMS|1|A+1FMS|1|B | Structure of complex between cyclohexyl-bis-furamidine and d(CGCGAATTCGCG) | X-RAY DIFFRACTION | 1.9 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 56 | 453D|1|A+453D|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'-BENZIMIDAZOLE COMPLEX | X-RAY DIFFRACTION | 1.8 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 57 | 1FTD|1|A+1FTD|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'-SYMMETRIC BIS-BENZIMIDAZOLE COMPLEX | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 58 | 2DP7|1|A+2DP7|1|B | Crystal Structure of D(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine | X-RAY DIFFRACTION | 1.55 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 59 | 2FII|1|A+2FII|1|B | Crystal Structure Analysis of the B-DNA Dodecamer CGCGAAT-aU-CGCG, with Incorporated Arabino-Uridin (aU) | X-RAY DIFFRACTION | 1.24 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 60 | 1G8N|1|A+1G8N|1|B | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNA | X-RAY DIFFRACTION | 1.55 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 61 | 1G75|1|A+1G75|1|B | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG): 5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNA | X-RAY DIFFRACTION | 1.57 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 62 | 461D|1|A+461D|1|B | A "HYDRAT-ION SPINE" IN A B-DNA MINOR GROOVE | X-RAY DIFFRACTION | 1.5 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 63 | 460D|1|A+460D|1|B | A "HYDRAT-ION SPINE" IN A B-DNA MINOR GROOVE | X-RAY DIFFRACTION | 1.2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 64 | 388D|1|A+388D|1|B | CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITY | X-RAY DIFFRACTION | 1.55 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 65 | 1ZPI|1|A+1ZPI|1|B | Crystal structure analysis of the minor groove binding quinolinium quaternary salt SN 8224 complexed with CGCGAATTCGCG | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 66 | 1ZPH|1|A+1ZPH|1|B | Crystal structure analysis of the minor groove binding quinolinium quaternary salt SN 8315 complexed with CGCGAATTCGCG | X-RAY DIFFRACTION | 1.8 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 67 | 2B3E|1|A+2B3E|1|B | Crystal structure of DB819-D(CGCGAATTCGCG)2 complex. | X-RAY DIFFRACTION | 1.36 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 68 | 2GVR|1|A+2GVR|1|B | Crystal structure of the berenil-D(CGCGAATTCGCG)2 complex at 1.65 A resolution. | X-RAY DIFFRACTION | 1.65 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 69 | 2I2I|1|A+2I2I|1|B | Crystal structure of the DB293-D(CGCGAATTCGCG)2 complex. | X-RAY DIFFRACTION | 1.63 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 70 | 1M6F|1|A+1M6F|1|B | Strong Binding in the DNA Minor Groove by an Aromatic Diamidine With a Shape That Does Not Match the Curvature of the Groove | X-RAY DIFFRACTION | 1.78 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 71 | 360D|1|A+360D|1|B | STRUCTURE OF 2,5-BIS{[4-(N-ETHYLAMIDINO)PHENYL]}FURAN COMPLEXED TO 5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3'. A MINOR GROOVE DRUG COMPLEX, SHOWING PATTERNS OF GROOVE HYDRATION | X-RAY DIFFRACTION | 1.85 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 72 | 2I5A|1|A+2I5A|1|B | Crystal structure of a DB1055-D(CGCGAATTCGCG)2 complex | X-RAY DIFFRACTION | 1.65 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 73 | 2B0K|1|A+2B0K|1|B | Crystal structure of the DB921-D(CGCGAATTCGCG)2 complex. | X-RAY DIFFRACTION | 1.64 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 74 | 455D|1|A+455D|1|B | A6/A18 INTER-STRAND DITHIOBIS(PROPANE)-CROSSLINKED DODECAMER (CGCGAATTCGCG)2 | X-RAY DIFFRACTION | 1.43 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 75 | 4DNB|1|A+4DNB|1|B | METHYLATION OF THE ECORI RECOGNITION SITE DOES NOT ALTER DNA CONFORMATION. THE CRYSTAL STRUCTURE OF D(CGCGAM6ATTCGCG) AT 2.0 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 76 | 127D|1|A+127D|1|B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') COMPLEXED WITH HOECHST 33258 | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 77 | 1D27|1|A+1D27|1|B | HIGH-RESOLUTION STRUCTURE OF A MUTAGENIC LESION IN DNA | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,double helix,structure | |
| 78 | 2DPB|1|A+2DPB|1|B | Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine | X-RAY DIFFRACTION | 1.5 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 79 | 2DPC|1|A+2DPC|1|B | Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine | X-RAY DIFFRACTION | 1.55 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 80 | 1I3T|1|A+1I3T|1|B | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATT(MO4)CGCG): THE WATSON-CRICK TYPE AND WOBBLE N4-METHOXYCYTIDINE/GUANOSINE BASE PAIRS IN B-DNA | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 81 | 403D|1|A+403D|1|B | 5'-D(*CP*GP*CP*(HYD)AP*AP*AP*TP*TP*TP*GP*CP*G)-3', 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE | X-RAY DIFFRACTION | 1.4 | 12 | B-form double helix,double helix,structure | |
| 82 | 1D63|1|A+1D63|1|B | CRYSTAL STRUCTURE OF A BERENIL-D(CGCAAATTTGCG) COMPLEX; AN EXAMPLE OF DRUG-DNA RECOGNITION BASED ON SEQUENCE-DEPENDENT STRUCTURAL FEATURES | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 83 | 109D|1|A+109D|1|B | VARIABILITY IN DNA MINOR GROOVE WIDTH RECOGNISED BY LIGAND BINDING: THE CRYSTAL STRUCTURE OF A BIS-BENZIMIDAZOLE COMPOUND BOUND TO THE DNA DUPLEX D(CGCGAATTCGCG)2 | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 84 | 1FMQ|1|A+1FMQ|1|B | Cyclo-butyl-bis-furamidine complexed with dCGCGAATTCGCG | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 85 | 1D45|1|A+1D45|1|B | DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-25 DEGREES C, PIPERAZINE DOWN | X-RAY DIFFRACTION | 1.9 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 86 | 1D44|1|A+1D44|1|B | DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE DOWN | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 87 | 1D43|1|A+1D43|1|B | DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE UP | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 88 | 1D46|1|A+1D46|1|B | DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-100 DEGREES C, PIPERAZINE DOWN | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 89 | 3HTS|1|A | HEAT SHOCK TRANSCRIPTION FACTOR/DNA COMPLEX | X-RAY DIFFRACTION | 1.75 | 12 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 90 | 2VLA|1|L+2VLA|1|M | Crystal structure of restriction endonuclease BpuJI recognition domain in complex with cognate DNA | X-RAY DIFFRACTION | 1.3 | 12 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 91 | 423D|1|A+423D|1|B | 5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3' | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,double helix,structure | |
| 92 | 2O4A|1|B+2O4A|1|C | Crystal Structure of the N-terminal CUT Domain of SATB1 Bound to Matrix Attachment Region DNA | X-RAY DIFFRACTION | 1.75 | 12 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 93 | 2O49|1|B+2O49|1|C | Crystal Structure of the N-terminal CUT domain of SATB1 Bound to Matrix Attachment Region DNA | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 94 | 3M4A|1|D+3M4A|1|E | Crystal structure of a bacterial topoisomerase IB in complex with DNA reveals a secondary DNA binding site | X-RAY DIFFRACTION | 1.65 | 12 | B-form double helix,double helix,structure | enzyme,isomerase |
| 95 | 3GA6|1|D+3GA6|1|F | Mth0212 in complex with two DNA helices | X-RAY DIFFRACTION | 1.898 | 12 | double helix,feature,mispair,structure | enzyme,hydrolase,nuclease |
| 96 | 442D|1|A+442D|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', BENZIMIDAZOLE DERIVATIVE COMPLEX | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 97 | 443D|1|A+443D|1|B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'/ BENZIMIDAZOLE DERIVATIVE COMPLEX | X-RAY DIFFRACTION | 1.6 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 98 | 2AC0|1|G+2AC0|1|H | Structural Basis of DNA Recognition by p53 Tetramers (complex I) | X-RAY DIFFRACTION | 1.8 | 12 | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription | |
| 99 | 3D0A|1|G+3D0A|1|H | Human p53 core domain with hot spot mutation R249S and second site suppressor mutation H168R in sequence-specific complex with DNA | X-RAY DIFFRACTION | 1.8 | 12 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 100 | 2AHI|1|G+2AHI|1|H | Structural Basis of DNA Recognition by p53 Tetramers (complex III) | X-RAY DIFFRACTION | 1.85 | 12 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 101 | 3EXJ|1|D+3EXJ|1|C | Crystal Structure of a p53 Core Tetramer Bound to DNA | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 102 | 2AHI|1|E+2AHI|1|F | Structural Basis of DNA Recognition by p53 Tetramers (complex III) | X-RAY DIFFRACTION | 1.85 | 12 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 103 | 3QMD|1|C | Structural Basis of Selective Binding of Nonmethylated CpG Islands by the CXXC Domain of CFP1 | X-RAY DIFFRACTION | 1.9 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 104 | 3QMD|1|B | Structural Basis of Selective Binding of Nonmethylated CpG Islands by the CXXC Domain of CFP1 | X-RAY DIFFRACTION | 1.9 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 105 | 2E52|1|I+2E52|1|J | Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA at 2.0 angstrom resolution | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 106 | 1N5C|1|A | Crystal Structure Analysis of the B-DNA Dodecamer CGCGAATT(ethenoC)GCG | X-RAY DIFFRACTION | 1.79 | 12 | B-form double helix,double helix,structure | |
| 107 | 2C7R|1|C+2C7R|1|D | HhaI DNA methyltransferase (T250G mutant) complex with oligonucleotide containing 2-aminopurine as a target base (GPGC:GMGC) and SAH | X-RAY DIFFRACTION | 1.9 | 12 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 108 | 2C7P|1|C+2C7P|1|D | HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine opposite to the target base (GCGC:GMPC) and SAH | X-RAY DIFFRACTION | 1.7 | 12 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 109 | 3EEO|1|C+3EEO|1|D | M. HhaI co-crystallized with synthetic dsDNA containing a propane diol in place of the deoxycytidine residue targeted for methylation. | X-RAY DIFFRACTION | 1.94 | 12 | double helix,structure | enzyme,methylase,transferase |
| 110 | 3F8J|1|F+3F8J|1|G | Mouse UHRF1 SRA domain bound with hemi-methylated CpG, crystal structure in space group C222(1) | X-RAY DIFFRACTION | 1.99 | 12 | B-form double helix,double helix,structure | enzyme,ligase |
| 111 | 3FDE|1|C+3FDE|1|F | Mouse UHRF1 SRA domain bound with hemi-methylated CpG DNA, crystal structure in space group C222(1) at 1.4 A resolution | X-RAY DIFFRACTION | 1.41 | 12 | B-form double helix,double helix,structure | enzyme,ligase |
| 112 | 3FDE|1|D+3FDE|1|E | Mouse UHRF1 SRA domain bound with hemi-methylated CpG DNA, crystal structure in space group C222(1) at 1.4 A resolution | X-RAY DIFFRACTION | 1.41 | 12 | B-form double helix,double helix,structure | enzyme,ligase |
| 113 | 3BAM|1|C+3BAM|1|E+3BAM|1|D | RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND MANGANESE IONS (POST-REACTIVE COMPLEX) | X-RAY DIFFRACTION | 1.8 | 12 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 114 | 2BAM|1|C+2BAM|1|D | RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND CALCIUM IONS (PRE-REACTIVE COMPLEX). | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 115 | 463D|1|A+463D|1|B | CALCIUM FORM OF D(CGCGAATTCGCG)2 | X-RAY DIFFRACTION | 1.45 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 116 | 2RF3|1|A+2RF3|1|B | Crystal Structure of Tricyclo-DNA: An Unusual Compensatory Change of Two Adjacent Backbone Torsion Angles | X-RAY DIFFRACTION | 1.75 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 117 | 1EHV|1|A | A NEW CRYSTAL STRUCTURE FOR THE DODECAMER C-G-C-G-A-A-T-T-C-G-C-G: SYMMETRY EFFECTS ON SEQUENCE-DEPENDENT DNA STRUCTURE | X-RAY DIFFRACTION | 1.8 | 12 | B-form double helix,DNA dodecamer,double helix,feature,structure | |
| 118 | 477D|1|A+477D|1|B | CALCIUM FORM OF THE B-DNA DODECAMER GGCGAATTCGCG | X-RAY DIFFRACTION | 1.7 | 12 | B-form double helix,double helix,structure | |
| 119 | 2P8D|1|A | The Structure of the Dickerson Sequence with an Incorporated CeNA Residue | X-RAY DIFFRACTION | 1.9 | 12 | B-form double helix,double helix,structure | |
| 120 | 2P8D|1|B | The Structure of the Dickerson Sequence with an Incorporated CeNA Residue | X-RAY DIFFRACTION | 1.9 | 12 | B-form double helix,double helix,structure | |
| 121 | 1OE4|1|E+1OE4|1|F | Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase | X-RAY DIFFRACTION | 2 | 12 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 122 | 1D3R|1|A+1D3R|1|B | CRYSTAL STRUCTURE OF TRIPLEX DNA | X-RAY DIFFRACTION | 1.8 | 12 | structure,triple helix | |
| 123 | 1D3R|1|C+1D3R|1|D | CRYSTAL STRUCTURE OF TRIPLEX DNA | X-RAY DIFFRACTION | 1.8 | 12 | structure,triple helix | |
| 124 | 3MR5|1|T+3MR5|1|P | Human DNA polymerase eta - DNA ternary complex with a CPD 1bp upstream of the active site (TT3) | X-RAY DIFFRACTION | 1.8 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 125 | 3MR6|1|T+3MR6|1|P | Human DNA polymerase eta - DNA ternary complex with a CPD 2bp upstream of the active site (TT4) | X-RAY DIFFRACTION | 1.9 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 126 | 3EZ5|1|C+3EZ5|1|B | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form). | X-RAY DIFFRACTION | 1.9 | 12 | double helix,structure | enzyme,polymerase,transferase |
| 127 | 3EZ5|1|F+3EZ5|1|E | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form). | X-RAY DIFFRACTION | 1.9 | 12 | double helix,structure | enzyme,polymerase,transferase |
| 128 | 3HT3|1|C+3HT3|1|B | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP | X-RAY DIFFRACTION | 1.7 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 129 | 3HT3|1|F+3HT3|1|E | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP | X-RAY DIFFRACTION | 1.7 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 130 | 3HP6|1|F+3HP6|1|E | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch | X-RAY DIFFRACTION | 1.81 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 131 | 3HP6|1|C+3HP6|1|B | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch | X-RAY DIFFRACTION | 1.81 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 132 | 3HWT|1|T+3HWT|1|P+3HWT|1|D | Ternary complex of DNA polymerase lambda bound to a two nucleotide gapped DNA substrate with a scrunched dA | X-RAY DIFFRACTION | 1.95 | 12 | enzyme,polymerase,transferase | |
| 133 | 3HW8|1|B+3HW8|1|C+3HW8|1|D | ternary complex of DNA polymerase lambda of a two nucleotide gapped DNA substrate with a C in the scrunch site | X-RAY DIFFRACTION | 1.95 | 12 | enzyme,polymerase,transferase |
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