RNA 3D Hub //

Equivalence class DNA_2.0_99532.2 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
11FQ2|1|A+ 1FQ2|1|B (rep)DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')CRYSTAL STRUCTURE ANALYSIS OF THE POTASSIUM FORM OF B-DNA DODECAMER CGCGAATTCGCGX-ray diffraction1.22000-11-27
21N1O|1|A+ 1N1O|1|B5'-D(*CP*GP*CP*GP*AP*AP*(TFT)P*TP*CP*GP*CP*G)-3'Crystal Structure of a B-form DNA Duplex Containing (L)-alpha-threofuranosyl (3'-2') Nucleosides: A Four-Carbon Sugar is Easily Accommodated into the Backbone of DNAX-ray diffraction1.22002-11-15
31DC0|1|A+ 1DC0|1|BDNA (5'-D(*CP*AP*TP*GP*GP*GP*CP*CP*CP*AP*TP*G)-3')CRYSTAL STRUCTURE OF AN A/B-DNA INTERMEDIATE CATGGGCCCATGX-ray diffraction1.32000-03-06
4423D|1|A+ 423D|1|BDNA (5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3')5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3'X-ray diffraction1.61999-10-14
51DPN|1|A+ 1DPN|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3')B-DODECAMER CGCGAA(TAF)TCGCG WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINEX-ray diffraction0.952000-04-04
6442D|1|A+ 442D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', BENZIMIDAZOLE DERIVATIVE COMPLEXX-ray diffraction1.62000-02-02
72FII|1|A+ 2FII|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*(UAR)P*CP*GP*CP*G)-3'Crystal Structure Analysis of the B-DNA Dodecamer CGCGAAT-aU-CGCG, with Incorporated Arabino-Uridin (aU)X-ray diffraction1.242006-05-23
82AC0|1|E+ 2AC0|1|F5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3'Structural Basis of DNA Recognition by p53 Tetramers (complex I)X-ray diffraction1.82006-07-11
92AC0|1|G+ 2AC0|1|H5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3'Structural Basis of DNA Recognition by p53 Tetramers (complex I)X-ray diffraction1.82006-07-11
103FDE|1|C+ 3FDE|1|F5'-D(*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP*GP*G)-3'Mouse UHRF1 SRA domain bound with hemi-methylated CpG DNA, crystal structure in space group C222(1) at 1.4 A resolutionX-ray diffraction1.412009-01-06
113FDE|1|D+ 3FDE|1|E5'-D(*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP*GP*G)-3'Mouse UHRF1 SRA domain bound with hemi-methylated CpG DNA, crystal structure in space group C222(1) at 1.4 A resolutionX-ray diffraction1.412009-01-06
123EY3|1|A+ 3EY3|1|B5'-D(*CP*GP*CP*GP*AP*AP*(USM)P*(USM)P*CP*GP*CP*G)-3'A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High ResolutionX-ray diffraction1.252009-04-28
133EY3|1|C+ 3EY3|1|D5'-D(*CP*GP*CP*GP*AP*AP*(USM)P*(USM)P*CP*GP*CP*G)-3'A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High ResolutionX-ray diffraction1.252009-04-28
142ZKD|1|C+ 2ZKD|1|DDNA (5'-D(*DCP*DTP*DAP*DCP*DCP*DGP*DGP*DAP*DTP*DTP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DAP*DAP*DTP*DCP*(5CM)P*DGP*DGP*DTP*DAP*DG)-3')Crystal structure of the SRA domain of mouse Np95 in complex with hemi-methylated CpG DNAX-ray diffraction1.62008-09-09
152ZKD|1|E+ 2ZKD|1|FDNA (5'-D(*DCP*DTP*DAP*DCP*DCP*DGP*DGP*DAP*DTP*DTP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DAP*DAP*DTP*DCP*(5CM)P*DGP*DGP*DTP*DAP*DG)-3')Crystal structure of the SRA domain of mouse Np95 in complex with hemi-methylated CpG DNAX-ray diffraction1.62008-09-09
161EI4|1|A+ 1EI4|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*(TLC)P*(TLC)P*CP*GP*CP*G)-3')B-DNA DODECAMER CGCGAAT(TLC)CGCG WITH INCORPORATED [3.3.0]BICYCLO-ARABINO-THYMINE-5'-PHOSPHATEX-ray diffraction1.432000-03-27
172FIH|1|A+ 2FIH|1|B5'-D(*CP*GP*CP*GP*AP*AP*(UAR)P*TP*CP*GP*CP*G)-3'Crystal Structure Analysis of the B-DNA Dodecamer CGCGAA-aU-TCGCG, with Incorporated Arabino-Uridine (aU)X-ray diffraction1.132006-05-23
183LPV|1|A+ 3LPV|1|B5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3'X-ray crystal structure of duplex DNA containing a cisplatin 1,2-d(GpG) intrastrand cross-linkX-ray diffraction1.772010-08-11
193LPV|1|C+ 3LPV|1|D5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3'X-ray crystal structure of duplex DNA containing a cisplatin 1,2-d(GpG) intrastrand cross-linkX-ray diffraction1.772010-08-11
20443D|1|A+ 443D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'/ BENZIMIDAZOLE DERIVATIVE COMPLEXX-ray diffraction1.62000-02-02
213IGL|1|BDNA (5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3')Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs (p53-DNA complex 1)X-ray diffraction1.82010-03-31
223IGK|1|BDNA (5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3')Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs (p53-DNA complex 2)X-ray diffraction1.72010-03-31
233GA6|1|D+ 3GA6|1|F5'-D(*GP*CP*CP*CP*TP*GP*UP*GP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*CP*GP*CP*AP*GP*GP*GP*C)-3'Mth0212 in complex with two DNA helicesX-ray diffraction1.8982010-03-09
243GA6|1|G+ 3GA6|1|H5'-D(*GP*CP*CP*CP*TP*GP*UP*GP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*CP*GP*CP*AP*GP*GP*GP*C)-3'Mth0212 in complex with two DNA helicesX-ray diffraction1.8982010-03-09
251N5C|1|A5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(EDC)P*GP*CP*G)-3'Crystal Structure Analysis of the B-DNA Dodecamer CGCGAATT(ethenoC)GCGX-ray diffraction1.792003-06-03
263MR5|1|T+ 3MR5|1|PDNA (5'-D(*TP*AP*AP*CP*(TTD)P*AP*TP*GP*AP*CP*GP*A)-3'), DNA (5'-D(*AP*CP*GP*TP*CP*AP*TP*AP*A)-3')Human DNA polymerase eta - DNA ternary complex with a CPD 1bp upstream of the active site (TT3)X-ray diffraction1.82010-06-30
271R2Z|1|B+ 1R2Z|1|C5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*TP*CP*CP*AP*(DHU)P*GP*TP*CP*TP*AP*CP*C)-3'MutM (Fpg) bound to 5,6-dihydrouracil (DHU) containing DNAX-ray diffraction1.632003-10-14
282OFI|1|B+ 2OFI|1|C5'-D(*CP*CP*GP*TP*TP*AP*GP*TP*CP*CP*GP*C)-3', 5'-D(*CP*GP*GP*AP*CP*TP*(3DR)P*AP*CP*GP*GP*G)-3'Crystal Structure of 3-methyladenine DNA Glycosylase I (TAG) bound to DNA/3mAX-ray diffraction1.852007-05-15
29477D|1|A+ 477D|1|B5'-D(*GP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'CALCIUM FORM OF THE B-DNA DODECAMER GGCGAATTCGCGX-ray diffraction1.71999-07-19
303F8J|1|F+ 3F8J|1|G5'-D(*DCP*DCP*DAP*DTP*DGP*(5CM)P*DGP*DCP*DTP*DGP*DAP*DC)-3', 5'-D(*DGP*DTP*DCP*DAP*DGP*DCP*DGP*DCP*DAP*DTP*DGP*DG)-3'Mouse UHRF1 SRA domain bound with hemi-methylated CpG, crystal structure in space group C222(1)X-ray diffraction1.992009-01-06
313M4A|1|D+ 3M4A|1|EDNA (5'-D(*GP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*CP*CP*CP*TP*TP*AP*TP*TP*C)-3')Crystal structure of a bacterial topoisomerase IB in complex with DNA reveals a secondary DNA binding siteX-ray diffraction1.652010-07-14
321S2R|1|A+ 1S2R|1|B5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3'A High Resolution Crystal Structure of [d(CGCAAATTTGCG)]2X-ray diffraction1.532005-01-04
333MR6|1|T+ 3MR6|1|PDNA (5'-D(*C*AP*TP*CP*AP*(TTD)P*AP*CP*GP*AP*GP*C)-3'), DNA (5'-D(*TP*CP*TP*CP*GP*TP*AP*AP*T)-3')Human DNA polymerase eta - DNA ternary complex with a CPD 2bp upstream of the active site (TT4)X-ray diffraction1.92010-06-30
342B3E|1|A+ 2B3E|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'Crystal structure of DB819-D(CGCGAATTCGCG)2 complex.X-ray diffraction1.362005-11-22
351VZK|1|A+ 1VZK|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP *CP*G)-3'A Thiophene Based Diamidine Forms a "Super" AT Binding Minor Groove AgentX-ray diffraction1.772004-10-25
362QEF|1|A+ 2QEF|1|BDNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(ZDU)P*DCP*(7GU)P*DCP*DG)-3')X-ray structure of 7-deaza-dG and Z3dU modified duplex CGCGAATXCZCGX-ray diffraction1.62008-05-06
373EY1|1|B5'-D(*CP*GP*CP*GP*AP*AP*(USM)P*(USM)P*CP*GP*CP*G)-3'A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High ResolutionX-ray diffraction1.62009-04-28
38455D|1|A+ 455D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*(SSP)AP*TP*TP*CP*GP*CP*G)-3')A6/A18 INTER-STRAND DITHIOBIS(PROPANE)-CROSSLINKED DODECAMER (CGCGAATTCGCG)2X-ray diffraction1.431999-10-08
393I8D|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*(DFT)P*CP*GP*CP*G)-3'The Pairing Geometry of the Hydrophobic Thymine Analog 2,4-Difluorotoluene in Duplex DNA as Analyzed by X-ray CrystallographyX-ray diffraction1.612009-09-01
403I8D|1|D5'-D(*CP*GP*CP*GP*AP*AP*TP*(DFT)P*CP*GP*CP*G)-3'The Pairing Geometry of the Hydrophobic Thymine Analog 2,4-Difluorotoluene in Duplex DNA as Analyzed by X-ray CrystallographyX-ray diffraction1.612009-09-01
411OE4|1|E+ 1OE4|1|F5'-D(*CP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*G)-3', 5'-D(*CP*GP*GP*AP*CP*TP*3DR*AP*CP*GP*GP*G)-3'Xenopus SMUG1, an anti-mutator uracil-DNA GlycosylaseX-ray diffraction22003-07-11
422E52|1|I+ 2E52|1|JDNA (5'-D(*DGP*DCP*DCP*DAP*DAP*DGP*DCP*DTP*DTP*DGP*DGP*DC)-3')Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA at 2.0 angstrom resolutionX-ray diffraction22007-12-18
432AHI|1|E+ 2AHI|1|F5'-D(*CP*GP*GP*AP*CP*AP*TP*GP*TP*CP*CP*G)-3'Structural Basis of DNA Recognition by p53 Tetramers (complex III)X-ray diffraction1.852006-07-11
442AHI|1|G+ 2AHI|1|H5'-D(*CP*GP*GP*AP*CP*AP*TP*GP*TP*CP*CP*G)-3'Structural Basis of DNA Recognition by p53 Tetramers (complex III)X-ray diffraction1.852006-07-11
453HT3|1|C+ 3HT3|1|B5'-D(*AP*CP*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3'Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTPX-ray diffraction1.72010-07-14
463HT3|1|F+ 3HT3|1|E5'-D(*AP*CP*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3'Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTPX-ray diffraction1.72010-07-14
473OIE|1|A+ 3OIE|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'Crystal structure of the DB1880-D(CGCGAATTCGCG)2 complexX-ray diffraction1.92011-01-19
483HTS|1|A5'-D(*GP*GP*TP*TP*CP*TP*AP*GP*AP*AP*CP*C)-3'HEAT SHOCK TRANSCRIPTION FACTOR/DNA COMPLEXX-ray diffraction1.751999-04-29
493HW8|1|B+ 3HW8|1|C+ 3HW8|1|D5'-D(*CP*GP*GP*CP*CP*AP*AP*TP*AP*CP*TP*G)-3', 5'-D(*CP*AP*GP*TP*AP*T)-3', 5'-D(P*GP*CP*CP*G)-3'ternary complex of DNA polymerase lambda of a two nucleotide gapped DNA substrate with a C in the scrunch siteX-ray diffraction1.952009-08-25
501Z5T|1|A+ 1Z5T|1|B5'-D(*CP*GP*CP*GP*AP*AP*(ZDU)P*(ZDU)P*CP*GP*CP*G)-3'Crystal Structure of [d(CGCGAA(Z3dU)(Z3dU)CGCG)]2, Z3dU:5-(3-aminopropyl)-2'-deoxyuridine, in presence of thallium I.X-ray diffraction1.62005-07-26
513D0P|1|BDNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DCP*DG)-3')Insights into RNA/DNA hybrid recognition and processing by RNase H from the crystal structure of a non-specific enzyme-dsDNA complexX-ray diffraction1.82008-10-07
523D0P|1|DDNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DCP*DG)-3')Insights into RNA/DNA hybrid recognition and processing by RNase H from the crystal structure of a non-specific enzyme-dsDNA complexX-ray diffraction1.82008-10-07
533D0A|1|E+ 3D0A|1|FDNA (5'-D(*DCP*DGP*DGP*DGP*DCP*DAP*DTP*DGP*DCP*DCP*DCP*DG)-3')Human p53 core domain with hot spot mutation R249S and second site suppressor mutation H168R in sequence-specific complex with DNAX-ray diffraction1.82009-01-20
543D0A|1|G+ 3D0A|1|HDNA (5'-D(*DCP*DGP*DGP*DGP*DCP*DAP*DTP*DGP*DCP*DCP*DCP*DG)-3')Human p53 core domain with hot spot mutation R249S and second site suppressor mutation H168R in sequence-specific complex with DNAX-ray diffraction1.82009-01-20
553HP6|1|C+ 3HP6|1|B5'-D(*AP*CP*GP*CP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DDG))-3'Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatchX-ray diffraction1.812010-06-23
563HP6|1|F+ 3HP6|1|E5'-D(*AP*CP*GP*CP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DDG))-3'Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatchX-ray diffraction1.812010-06-23
573EZ5|1|C+ 3EZ5|1|B5'-D(*DAP*DTP*DTP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DG)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DG)-3'Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form).X-ray diffraction1.92009-11-10
583EZ5|1|F+ 3EZ5|1|E5'-D(*DAP*DTP*DTP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DG)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DG)-3'Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form).X-ray diffraction1.92009-11-10
592RF3|1|A+ 2RF3|1|B5'-d(CGCG(TCY)ATTCGCG)-3'Crystal Structure of Tricyclo-DNA: An Unusual Compensatory Change of Two Adjacent Backbone Torsion AnglesX-ray diffraction1.752008-02-12
603QMD|1|BDNA (5'-D(*GP*CP*CP*AP*AP*CP*GP*AP*TP*GP*GP*C)-3')Structural Basis of Selective Binding of Nonmethylated CpG Islands by the CXXC Domain of CFP1X-ray diffraction1.92011-02-23
613QMD|1|CDNA (5'-D(*GP*CP*CP*AP*TP*CP*GP*TP*TP*GP*GP*C)-3')Structural Basis of Selective Binding of Nonmethylated CpG Islands by the CXXC Domain of CFP1X-ray diffraction1.92011-02-23
623HWT|1|T+ 3HWT|1|P+ 3HWT|1|D5'-D(P*GP*CP*CP*G)-3', 5'-D(*CP*AP*GP*TP*AP*(2DT))-3', 5'-D(*CP*GP*GP*CP*AP*AP*AP*TP*AP*CP*TP*G)-3'Ternary complex of DNA polymerase lambda bound to a two nucleotide gapped DNA substrate with a scrunched dAX-ray diffraction1.952009-08-25
631M6F|1|A+ 1M6F|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')Strong Binding in the DNA Minor Groove by an Aromatic Diamidine With a Shape That Does Not Match the Curvature of the GrooveX-ray diffraction1.782002-11-15
642QEG|1|A+ 2QEG|1|BDNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*(7GU)P*DCP*DG)-3')B-DNA with 7-deaza-dG modificationX-ray diffraction1.62008-05-06
653EXJ|1|D+ 3EXJ|1|C5'-D(*DTP*DTP*DGP*DAP*DGP*DCP*DAP*DTP*DGP*DCP*DTP*DC)-3', 5'-D(P*DGP*DAP*DGP*DCP*DAP*DTP*DGP*DCP*DTP*DCP*DA)-3'Crystal Structure of a p53 Core Tetramer Bound to DNAX-ray diffraction22008-12-16
662GVR|1|A+ 2GVR|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'Crystal structure of the berenil-D(CGCGAATTCGCG)2 complex at 1.65 A resolution.X-ray diffraction1.652007-06-19
67428D|1|A+ 428D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')STRUCTURE OF THE POTASSIUM FORM OF CGCGAATTCGCG: DNA DEFORMATION BY ELECTROSTATIC COLLAPSE AROUND SMALL CATIONSX-ray diffraction1.751998-10-09
681ZPI|1|A+ 1ZPI|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'Crystal structure analysis of the minor groove binding quinolinium quaternary salt SN 8224 complexed with CGCGAATTCGCGX-ray diffraction1.62005-10-11
692B0K|1|A+ 2B0K|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'Crystal structure of the DB921-D(CGCGAATTCGCG)2 complex.X-ray diffraction1.642005-11-22
702I5A|1|A+ 2I5A|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'Crystal structure of a DB1055-D(CGCGAATTCGCG)2 complexX-ray diffraction1.652008-04-08
712I2I|1|A+ 2I2I|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'Crystal structure of the DB293-D(CGCGAATTCGCG)2 complex.X-ray diffraction1.632007-07-31
722P8D|1|A5'-D(*DCP*DGP*DCP*DGP*DAP*(XAR)P*DTP*DTP*DCP*DGP*DCP*DG)-3'The Structure of the Dickerson Sequence with an Incorporated CeNA ResidueX-ray diffraction1.92008-02-05
732P8D|1|B5'-D(*DCP*DGP*DCP*DGP*DAP*(XAR)P*DTP*DTP*DCP*DGP*DCP*DG)-3'The Structure of the Dickerson Sequence with an Incorporated CeNA ResidueX-ray diffraction1.92008-02-05
742GYX|1|A+ 2GYX|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'Crystal structure of DB884- D(CGCGAATTCGCG)2 complex at 1.86 A resolution.X-ray diffraction1.862007-05-22
751ZPH|1|A+ 1ZPH|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'Crystal structure analysis of the minor groove binding quinolinium quaternary salt SN 8315 complexed with CGCGAATTCGCGX-ray diffraction1.82005-10-11
76436D|1|A+ 436D|1|B5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3'THE DICKERSON-DREW B-DNA DODECAMER REVISITED-AT ATOMIC RESOLUTIONX-ray diffraction1.11998-11-25
772DYW|1|A+ 2DYW|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'A Backbone binding DNA complexX-ray diffraction1.132007-01-02
78460D|1|A+ 460D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3')A "HYDRAT-ION SPINE" IN A B-DNA MINOR GROOVEX-ray diffraction1.21999-04-08
791JGR|1|A+ 1JGR|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'Crystal Structure Analysis of the B-DNA Dodecamer CGCGAATTCGCG with Thallium Ions.X-ray diffraction1.22001-09-05
802VLA|1|L+ 2VLA|1|M5'-D(*GP*GP*TP*AP*CP*CP*CP*GP*TP*GP *GP*A)-3', 5'-D(*TP*CP*CP*AP*CP*GP*GP*GP*TP*AP *CP*C)-3'Crystal structure of restriction endonuclease BpuJI recognition domain in complex with cognate DNAX-ray diffraction1.32008-05-06
81403D|1|A+ 403D|1|BDNA (5'-D(*CP*GP*CP*(IGU)P*AP*AP*TP*TP*TP*GP*CP*G)-3')5'-D(*CP*GP*CP*(HYD)AP*AP*AP*TP*TP*TP*GP*CP*G)-3', 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLEX-ray diffraction1.41998-07-06
82355D|1|A+ 355D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')synthetic constructTHE B-DNA DODECAMER AT HIGH RESOLUTIONX-ray diffraction1.41997-10-13
832EA0|1|B+ 2EA0|1|C5'-D(P*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*G)-3', 5'-D(P*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli in complex with AP-site containing DNA substrateX-ray diffraction1.42008-02-26
84463D|1|A+ 463D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')CALCIUM FORM OF D(CGCGAATTCGCG)2X-ray diffraction1.451999-10-08
852DPB|1|A+ 2DPB|1|BDNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DUP*DCP*DGP*DCP*DG)-3')Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridineX-ray diffraction1.52007-04-17
86461D|1|A+ 461D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3')A "HYDRAT-ION SPINE" IN A B-DNA MINOR GROOVEX-ray diffraction1.51999-04-08
873JXY|1|B+ 3JXY|1|CDNA (5'-D(*CP*GP*GP*AP*CP*TP*GP*AP*CP*GP*GP*G)-3'), DNA (5'-D(*CP*CP*CP*GP*TP*TP*AP*GP*TP*CP*CP*G)-3')Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing a GT MismatchX-ray diffraction1.52010-09-22
882DP7|1|A+ 2DP7|1|BDNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DUP*DCP*DGP*DCP*DG)-3')Crystal Structure of D(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridineX-ray diffraction1.552007-04-17
89389D|1|A+ 389D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3')CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITYX-ray diffraction1.551998-05-05
901G8N|1|A+ 1G8N|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*(UFR)P*CP*GP*CP*G)-3'MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNAX-ray diffraction1.552001-02-05
912DPC|1|A+ 2DPC|1|BDNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(OMU)P*DCP*DGP*DCP*DG)-3')Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridineX-ray diffraction1.552007-04-17
92388D|1|A+ 388D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*(TAF)P*CP*GP*CP*G)-3')CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITYX-ray diffraction1.551998-05-05
931G75|1|A+ 1G75|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*(UFR)P*CP*GP*CP*G)-3'MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG): 5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNAX-ray diffraction1.572001-02-05
941I3T|1|A+ 1I3T|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(C45)P*GP*CP*GP)-3'MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATT(MO4)CGCG): THE WATSON-CRICK TYPE AND WOBBLE N4-METHOXYCYTIDINE/GUANOSINE BASE PAIRS IN B-DNAX-ray diffraction1.62001-09-14
951EDR|1|A+ 1EDR|1|B5'-D(*CP*GP*CP*GP*(A47)AP*AP*TP*TP*CP*GP*CP*G)-3'MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG) AT 1.6 ANGSTROMX-ray diffraction1.62000-02-16
961J8L|1|A+ 1J8L|1|BDNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*(C45)P*GP*CP*G)-3')Molecular and Crystal Structure of D(CGCAAATTMO4CGCG): the Watson-Crick Type N4-Methoxycytidine/Adenosine Base Pair in B-DNAX-ray diffraction1.62001-09-28
97456D|1|A+ 456D|1|BDNA (5'-D(*CP*GP*CP*GP*(A47)P*AP*TP*CP*CP*GP*CP*G)-3')MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATCCGCG): THE WATSON-CRICK TYPE N6-METHOXYADENOSINE/CYTIDINE BASE-PAIRS IN B-DNAX-ray diffraction1.62000-01-01
983JX7|1|B+ 3JX7|1|CDNA (5'-D(*CP*GP*GP*AP*CP*TP*(DZM)P*AP*CP*GP*GP*G)-3'), DNA (5'-D(*CP*CP*CP*GP*TP*TP*AP*GP*TP*CP*CP*G)-3')Bacillus cereus alkylpurine DNA glycosylase AlkD bound to DNA containing a 3-METHYLADENINE analogX-ray diffraction1.62010-09-22
991VE8|1|A+ 1VE8|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5FC)P*GP*CP*G)-3'X-Ray analyses of oligonucleotides containing 5-formylcytosine, suggesting a structural reason for codon-anticodon recognition of mitochondrial tRNA-Met; Part 1, d(CGCGAATT(f5C)GCG)X-ray diffraction1.652005-06-28
1002C7P|1|C+ 2C7P|1|D5'-D(*G*GP*AP*TP*GP*(5CM*2PR)*CP*TP*GP*AP*C)-3', 5'-D(*G*TP*CP*AP*GP*CP*GP*CP*AP*TP*CP*C)-3'synthetic constructHhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine opposite to the target base (GCGC:GMPC) and SAHX-ray diffraction1.72005-12-14
1012O4A|1|B+ 2O4A|1|CDNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3')Crystal Structure of the N-terminal CUT Domain of SATB1 Bound to Matrix Attachment Region DNAX-ray diffraction1.752007-08-14
1021EHV|1|ADNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')A NEW CRYSTAL STRUCTURE FOR THE DODECAMER C-G-C-G-A-A-T-T-C-G-C-G: SYMMETRY EFFECTS ON SEQUENCE-DEPENDENT DNA STRUCTUREX-ray diffraction1.82000-07-14
1031D3R|1|A+ 1D3R|1|BDNA (5'-D(*CP*(BRU)P*CP*CP*(BRU)P*CP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*CP*GP*GP*AP*G)-3')CRYSTAL STRUCTURE OF TRIPLEX DNAX-ray diffraction1.82000-01-01
1041G8V|1|A+ 1G8V|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*(UFR)P*CP*GP*CP*G)-3'MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNAX-ray diffraction1.82001-02-05
105453D|1|A+ 453D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'-BENZIMIDAZOLE COMPLEXX-ray diffraction1.82000-05-15
1063BAM|1|C+ 3BAM|1|E+ 3BAM|1|DDNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3'), DNA (5'-D(P*GP*AP*TP*CP*CP*AP*TP*A)-3'), DNA (5'-D(*TP*AP*TP*G)-3')RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND MANGANESE IONS (POST-REACTIVE COMPLEX)X-ray diffraction1.81999-01-13
1071D3R|1|C+ 1D3R|1|DDNA (5'-D(*CP*(BRU)P*CP*CP*(BRU)P*CP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*CP*GP*GP*AP*G)-3')CRYSTAL STRUCTURE OF TRIPLEX DNAX-ray diffraction1.82000-01-01
1081DOU|1|A+ 1DOU|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')MONOVALENT CATIONS SEQUESTER WITHIN THE A-TRACT MINOR GROOVE OF [D(CGCGAATTCGCG)]2X-ray diffraction1.821999-12-27
109360D|1|A+ 360D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')synthetic constructSTRUCTURE OF 2,5-BIS{[4-(N-ETHYLAMIDINO)PHENYL]}FURAN COMPLEXED TO 5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3'. A MINOR GROOVE DRUG COMPLEX, SHOWING PATTERNS OF GROOVE HYDRATIONX-ray diffraction1.851998-07-16
1101G8U|1|A+ 1G8U|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*(UFR)P*CP*GP*CP*G)-3'MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNAX-ray diffraction1.852001-02-05
1112OPF|1|B+ 2OPF|1|C5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*G)-3', 5'-D(P*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (R252A) in complex with AP-site containing DNA substrateX-ray diffraction1.852008-02-26
1121BNA|1|A+ 1BNA|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')STRUCTURE OF A B-DNA DODECAMER. CONFORMATION AND DYNAMICSX-ray diffraction1.91981-05-21
1131FMS|1|A+ 1FMS|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'Structure of complex between cyclohexyl-bis-furamidine and d(CGCGAATTCGCG)X-ray diffraction1.92000-09-11
1147BNA|1|A+ 7BNA|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')ANISOTROPIC THERMAL-PARAMETER REFINEMENT OF THE DNA DODECAMER CGCGAATTCGCG BY THE SEGMENTED RIGID-BODY METHODX-ray diffraction1.91985-07-17
1159BNA|1|A+ 9BNA|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')RE-REFINEMENT OF THE B-DODECAMER D(CGCGAATTCGCG) WITH A COMPARATIVE ANALYSIS OF THE SOLVENT IN IT AND IN THE Z-HEXAMER D(5BRCG5BRCG5BRCG)X-ray diffraction1.91991-04-15
1161D45|1|A+ 1D45|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-25 DEGREES C, PIPERAZINE DOWNX-ray diffraction1.91992-04-15
1172C7R|1|C+ 2C7R|1|D5'-D(*G*GP*AP*TP*GP*(5CM)*GP*CP*TP*GP*AP*C)-3', 5'-D(*G*TP*CP*AP*GP*(2PR)*GP*CP*AP*TP*CP*C)-3'synthetic constructHhaI DNA methyltransferase (T250G mutant) complex with oligonucleotide containing 2-aminopurine as a target base (GPGC:GMGC) and SAHX-ray diffraction1.92005-12-14
1183EEO|1|C+ 3EEO|1|D5'-D(P*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3', 5'-D(P*DGP*DTP*DCP*DAP*DGP*(PDI)P*DGP*DCP*DAP*DTP*DGP*DG)-3'M. HhaI co-crystallized with synthetic dsDNA containing a propane diol in place of the deoxycytidine residue targeted for methylation.X-ray diffraction1.942010-03-02
119109D|1|A+ 109D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')VARIABILITY IN DNA MINOR GROOVE WIDTH RECOGNISED BY LIGAND BINDING: THE CRYSTAL STRUCTURE OF A BIS-BENZIMIDAZOLE COMPOUND BOUND TO THE DNA DUPLEX D(CGCGAATTCGCG)2X-ray diffraction21995-05-08
1201D63|1|A+ 1D63|1|BDNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3')CRYSTAL STRUCTURE OF A BERENIL-D(CGCAAATTTGCG) COMPLEX; AN EXAMPLE OF DRUG-DNA RECOGNITION BASED ON SEQUENCE-DEPENDENT STRUCTURAL FEATURESX-ray diffraction21993-01-15
1211FTD|1|A+ 1FTD|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'-SYMMETRIC BIS-BENZIMIDAZOLE COMPLEXX-ray diffraction22001-02-26
1224DNB|1|A+ 4DNB|1|BDNA (5'-D(*CP*GP*CP*GP*AP*(6MA)P*TP*TP*CP*GP*CP*G)-3')METHYLATION OF THE ECORI RECOGNITION SITE DOES NOT ALTER DNA CONFORMATION. THE CRYSTAL STRUCTURE OF D(CGCGAM6ATTCGCG) AT 2.0 ANGSTROMS RESOLUTIONX-ray diffraction21989-01-09
1231FMQ|1|A+ 1FMQ|1|B5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'Cyclo-butyl-bis-furamidine complexed with dCGCGAATTCGCGX-ray diffraction22000-09-11
1241D44|1|A+ 1D44|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE DOWNX-ray diffraction21992-04-15
1251D46|1|A+ 1D46|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-100 DEGREES C, PIPERAZINE DOWNX-ray diffraction21992-04-15
1262D47|1|A+ 2D47|1|BDNA (5'-D(*CP*CP*CP*CP*CP*GP*CP*GP*GP*GP*GP*G)-3')MOLECULAR STRUCTURE OF A COMPLETE TURN OF A-DNAX-ray diffraction21991-10-02
127457D|1|A+ 457D|1|BDNA (5'-D(*CP*GP*CP*GP*(A47)P*AP*TP*TP*CP*GP*CP*G)-3')MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG): N6-METHOXYADENOSINE/ THYMIDINE BASE-PAIRS IN B-DNAX-ray diffraction22000-01-01
128127D|1|A+ 127D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') COMPLEXED WITH HOECHST 33258X-ray diffraction21994-01-15
1291D43|1|A+ 1D43|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE UPX-ray diffraction21992-04-15
130267D|1|A+ 267D|1|BDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5CM)P*GP*CP*G)-3')STRUCTURAL STUDIES ON NUCLEIC ACIDSX-ray diffraction21996-08-28
1311D27|1|A+ 1D27|1|BDNA (5'-D(*CP*GP*CP*(6OG)P*AP*AP*TP*TP*TP*GP*CP*G)-3')HIGH-RESOLUTION STRUCTURE OF A MUTAGENIC LESION IN DNAX-ray diffraction21992-04-07
1322O49|1|B+ 2O49|1|CDNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3')Crystal Structure of the N-terminal CUT domain of SATB1 Bound to Matrix Attachment Region DNAX-ray diffraction22007-08-14
1332BAM|1|C+ 2BAM|1|DDNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3')RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND CALCIUM IONS (PRE-REACTIVE COMPLEX).X-ray diffraction21999-10-31

Release history

Release0.12
Date2011-04-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
1
3HT3|1|C+3HT3|1|B		Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTPX-RAY DIFFRACTION1.712B-form double helix,double helix,structureenzyme,polymerase,transferase
2
3HP6|1|C+3HP6|1|B		Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatchX-RAY DIFFRACTION1.8112B-form double helix,double helix,structureenzyme,polymerase,transferase
3
3HP6|1|F+3HP6|1|E		Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatchX-RAY DIFFRACTION1.8112B-form double helix,double helix,structureenzyme,polymerase,transferase
4
3HT3|1|F+3HT3|1|E		Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTPX-RAY DIFFRACTION1.712B-form double helix,double helix,structureenzyme,polymerase,transferase
5
3EZ5|1|F+3EZ5|1|E		Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form).X-RAY DIFFRACTION1.912double helix,structureenzyme,polymerase,transferase
6
3EZ5|1|C+3EZ5|1|B		Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form).X-RAY DIFFRACTION1.912double helix,structureenzyme,polymerase,transferase
7
3MR6|1|T+3MR6|1|P		Human DNA polymerase eta - DNA ternary complex with a CPD 2bp upstream of the active site (TT4)X-RAY DIFFRACTION1.912B-form double helix,double helix,structureenzyme,polymerase,transferase
8
3MR5|1|T+3MR5|1|P		Human DNA polymerase eta - DNA ternary complex with a CPD 1bp upstream of the active site (TT3)X-RAY DIFFRACTION1.812B-form double helix,double helix,structureenzyme,polymerase,transferase
9
3HW8|1|B+3HW8|1|C+3HW8|1|D		ternary complex of DNA polymerase lambda of a two nucleotide gapped DNA substrate with a C in the scrunch siteX-RAY DIFFRACTION1.9512enzyme,polymerase,transferase
10
3HWT|1|T+3HWT|1|P+3HWT|1|D		Ternary complex of DNA polymerase lambda bound to a two nucleotide gapped DNA substrate with a scrunched dAX-RAY DIFFRACTION1.9512enzyme,polymerase,transferase
11
3D0P|1|D		Insights into RNA/DNA hybrid recognition and processing by RNase H from the crystal structure of a non-specific enzyme-dsDNA complexX-RAY DIFFRACTION1.812B-form double helix,DNA dodecamer,double helix,feature,structureenzyme,hydrolase,nuclease
12
3I8D|1|D		The Pairing Geometry of the Hydrophobic Thymine Analog 2,4-Difluorotoluene in Duplex DNA as Analyzed by X-ray CrystallographyX-RAY DIFFRACTION1.6112B-form double helix,double helix,structureenzyme,hydrolase,nuclease
13
3GA6|1|G+3GA6|1|H		Mth0212 in complex with two DNA helicesX-RAY DIFFRACTION1.89812double helix,feature,mispair,structureenzyme,hydrolase,nuclease
14
3JX7|1|B+3JX7|1|C		Bacillus cereus alkylpurine DNA glycosylase AlkD bound to DNA containing a 3-METHYLADENINE analogX-RAY DIFFRACTION1.612B-form double helix,double helix,structureenzyme,hydrolase
15
3JXY|1|B+3JXY|1|C		Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing a GT MismatchX-RAY DIFFRACTION1.512double helix,feature,mispair,structureenzyme,hydrolase
16
3GA6|1|D+3GA6|1|F		Mth0212 in complex with two DNA helicesX-RAY DIFFRACTION1.89812double helix,feature,mispair,structureenzyme,hydrolase,nuclease
17
443D|1|A+443D|1|B		5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'/ BENZIMIDAZOLE DERIVATIVE COMPLEXX-RAY DIFFRACTION1.612B-form double helix,DNA dodecamer,double helix,feature,structure
18
442D|1|A+442D|1|B		5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', BENZIMIDAZOLE DERIVATIVE COMPLEXX-RAY DIFFRACTION1.612B-form double helix,DNA dodecamer,double helix,feature,structure
19
2EA0|1|B+2EA0|1|C		Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli in complex with AP-site containing DNA substrateX-RAY DIFFRACTION1.412B-form double helix,double helix,structureenzyme,hydrolase,nuclease
20
2OPF|1|B+2OPF|1|C		Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (R252A) in complex with AP-site containing DNA substrateX-RAY DIFFRACTION1.8512B-form double helix,double helix,structureenzyme,hydrolase,nuclease
21
1DC0|1|A+1DC0|1|B		CRYSTAL STRUCTURE OF AN A/B-DNA INTERMEDIATE CATGGGCCCATGX-RAY DIFFRACTION1.312A-form double helix,double helix,structure
22
3M4A|1|D+3M4A|1|E		Crystal structure of a bacterial topoisomerase IB in complex with DNA reveals a secondary DNA binding siteX-RAY DIFFRACTION1.6512B-form double helix,double helix,structureenzyme,isomerase
23
267D|1|A+267D|1|B		STRUCTURAL STUDIES ON NUCLEIC ACIDSX-RAY DIFFRACTION212B-form double helix,DNA dodecamer,double helix,feature,structure
24
3OIE|1|A+3OIE|1|B		Crystal structure of the DB1880-D(CGCGAATTCGCG)2 complexX-RAY DIFFRACTION1.912B-form double helix,DNA dodecamer,double helix,feature,structure
25
1D46|1|A+1D46|1|B		DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-100 DEGREES C, PIPERAZINE DOWNX-RAY DIFFRACTION212B-form double helix,DNA dodecamer,double helix,feature,structure
26
1D45|1|A+1D45|1|B		DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-25 DEGREES C, PIPERAZINE DOWNX-RAY DIFFRACTION1.912B-form double helix,DNA dodecamer,double helix,feature,structure
27
1D43|1|A+1D43|1|B		DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE UPX-RAY DIFFRACTION212B-form double helix,DNA dodecamer,double helix,feature,structure
28
1D44|1|A+1D44|1|B		DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE DOWNX-RAY DIFFRACTION212B-form double helix,DNA dodecamer,double helix,feature,structure
29
109D|1|A+109D|1|B		VARIABILITY IN DNA MINOR GROOVE WIDTH RECOGNISED BY LIGAND BINDING: THE CRYSTAL STRUCTURE OF A BIS-BENZIMIDAZOLE COMPOUND BOUND TO THE DNA DUPLEX D(CGCGAATTCGCG)2X-RAY DIFFRACTION212B-form double helix,DNA dodecamer,double helix,feature,structure
30
1FMQ|1|A+1FMQ|1|B		Cyclo-butyl-bis-furamidine complexed with dCGCGAATTCGCGX-RAY DIFFRACTION212B-form double helix,DNA dodecamer,double helix,feature,structure
31
1D63|1|A+1D63|1|B		CRYSTAL STRUCTURE OF A BERENIL-D(CGCAAATTTGCG) COMPLEX; AN EXAMPLE OF DRUG-DNA RECOGNITION BASED ON SEQUENCE-DEPENDENT STRUCTURAL FEATURESX-RAY DIFFRACTION212B-form double helix,DNA dodecamer,double helix,feature,structure
32
2DPC|1|A+2DPC|1|B		Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridineX-RAY DIFFRACTION1.5512B-form double helix,DNA dodecamer,double helix,feature,structure
33
1EI4|1|A+1EI4|1|B		B-DNA DODECAMER CGCGAAT(TLC)CGCG WITH INCORPORATED [3.3.0]BICYCLO-ARABINO-THYMINE-5'-PHOSPHATEX-RAY DIFFRACTION1.4312B-form double helix,DNA dodecamer,double helix,feature,structure
34
1J8L|1|A+1J8L|1|B		Molecular and Crystal Structure of D(CGCAAATTMO4CGCG): the Watson-Crick Type N4-Methoxycytidine/Adenosine Base Pair in B-DNAX-RAY DIFFRACTION1.612B-form double helix,double helix,structure
35
9BNA|1|A+9BNA|1|B		RE-REFINEMENT OF THE B-DODECAMER D(CGCGAATTCGCG) WITH A COMPARATIVE ANALYSIS OF THE SOLVENT IN IT AND IN THE Z-HEXAMER D(5BRCG5BRCG5BRCG)X-RAY DIFFRACTION1.912B-form double helix,DNA dodecamer,double helix,feature,structure
36
1BNA|1|A+1BNA|1|B		STRUCTURE OF A B-DNA DODECAMER. CONFORMATION AND DYNAMICSX-RAY DIFFRACTION1.912B-form double helix,DNA dodecamer,double helix,feature,structure
37
1D27|1|A+1D27|1|B		HIGH-RESOLUTION STRUCTURE OF A MUTAGENIC LESION IN DNAX-RAY DIFFRACTION212B-form double helix,double helix,structure
38
1FMS|1|A+1FMS|1|B		Structure of complex between cyclohexyl-bis-furamidine and d(CGCGAATTCGCG)X-RAY DIFFRACTION1.912B-form double helix,DNA dodecamer,double helix,feature,structure
39
1VZK|1|A+1VZK|1|B		A Thiophene Based Diamidine Forms a "Super" AT Binding Minor Groove AgentX-RAY DIFFRACTION1.7712B-form double helix,DNA dodecamer,double helix,feature,structure
40
453D|1|A+453D|1|B		5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'-BENZIMIDAZOLE COMPLEXX-RAY DIFFRACTION1.812B-form double helix,DNA dodecamer,double helix,feature,structure
41
1FTD|1|A+1FTD|1|B		5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'-SYMMETRIC BIS-BENZIMIDAZOLE COMPLEXX-RAY DIFFRACTION212B-form double helix,DNA dodecamer,double helix,feature,structure
42
2DP7|1|A+2DP7|1|B		Crystal Structure of D(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridineX-RAY DIFFRACTION1.5512B-form double helix,DNA dodecamer,double helix,feature,structure
43
1G75|1|A+1G75|1|B		MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG): 5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNAX-RAY DIFFRACTION1.5712B-form double helix,DNA dodecamer,double helix,feature,structure
44
1G8N|1|A+1G8N|1|B		MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNAX-RAY DIFFRACTION1.5512B-form double helix,DNA dodecamer,double helix,feature,structure
45
2FII|1|A+2FII|1|B		Crystal Structure Analysis of the B-DNA Dodecamer CGCGAAT-aU-CGCG, with Incorporated Arabino-Uridin (aU)X-RAY DIFFRACTION1.2412B-form double helix,DNA dodecamer,double helix,feature,structure
46
2FIH|1|A+2FIH|1|B		Crystal Structure Analysis of the B-DNA Dodecamer CGCGAA-aU-TCGCG, with Incorporated Arabino-Uridine (aU)X-RAY DIFFRACTION1.1312B-form double helix,DNA dodecamer,double helix,feature,structure
47
1N1O|1|A+1N1O|1|B		Crystal Structure of a B-form DNA Duplex Containing (L)-alpha-threofuranosyl (3'-2') Nucleosides: A Four-Carbon Sugar is Easily Accommodated into the Backbone of DNAX-RAY DIFFRACTION1.212B-form double helix,DNA dodecamer,double helix,feature,structure
48
1JGR|1|A+1JGR|1|B		Crystal Structure Analysis of the B-DNA Dodecamer CGCGAATTCGCG with Thallium Ions.X-RAY DIFFRACTION1.212B-form double helix,DNA dodecamer,double helix,feature,structure
49
1FQ2|1|A+1FQ2|1|B		CRYSTAL STRUCTURE ANALYSIS OF THE POTASSIUM FORM OF B-DNA DODECAMER CGCGAATTCGCGX-RAY DIFFRACTION1.212B-form double helix,DNA dodecamer,double helix,feature,structure
50
355D|1|A+355D|1|B		THE B-DNA DODECAMER AT HIGH RESOLUTIONX-RAY DIFFRACTION1.412B-form double helix,DNA dodecamer,double helix,feature,structure
51
428D|1|A+428D|1|B		STRUCTURE OF THE POTASSIUM FORM OF CGCGAATTCGCG: DNA DEFORMATION BY ELECTROSTATIC COLLAPSE AROUND SMALL CATIONSX-RAY DIFFRACTION1.7512B-form double helix,DNA dodecamer,double helix,feature,structure
52
1DOU|1|A+1DOU|1|B		MONOVALENT CATIONS SEQUESTER WITHIN THE A-TRACT MINOR GROOVE OF [D(CGCGAATTCGCG)]2X-RAY DIFFRACTION1.8212B-form double helix,DNA dodecamer,double helix,feature,structure
53
457D|1|A+457D|1|B		MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG): N6-METHOXYADENOSINE/ THYMIDINE BASE-PAIRS IN B-DNAX-RAY DIFFRACTION212B-form double helix,DNA dodecamer,double helix,feature,structure
54
1ZPH|1|A+1ZPH|1|B		Crystal structure analysis of the minor groove binding quinolinium quaternary salt SN 8315 complexed with CGCGAATTCGCGX-RAY DIFFRACTION1.812B-form double helix,DNA dodecamer,double helix,feature,structure
55
1ZPI|1|A+1ZPI|1|B		Crystal structure analysis of the minor groove binding quinolinium quaternary salt SN 8224 complexed with CGCGAATTCGCGX-RAY DIFFRACTION1.612B-form double helix,DNA dodecamer,double helix,feature,structure
56
1M6F|1|A+1M6F|1|B		Strong Binding in the DNA Minor Groove by an Aromatic Diamidine With a Shape That Does Not Match the Curvature of the GrooveX-RAY DIFFRACTION1.7812B-form double helix,DNA dodecamer,double helix,feature,structure
57
2I2I|1|A+2I2I|1|B		Crystal structure of the DB293-D(CGCGAATTCGCG)2 complex.X-RAY DIFFRACTION1.6312B-form double helix,DNA dodecamer,double helix,feature,structure
58
2GVR|1|A+2GVR|1|B		Crystal structure of the berenil-D(CGCGAATTCGCG)2 complex at 1.65 A resolution.X-RAY DIFFRACTION1.6512B-form double helix,DNA dodecamer,double helix,feature,structure
59
2B3E|1|A+2B3E|1|B		Crystal structure of DB819-D(CGCGAATTCGCG)2 complex.X-RAY DIFFRACTION1.3612B-form double helix,DNA dodecamer,double helix,feature,structure
60
2I5A|1|A+2I5A|1|B		Crystal structure of a DB1055-D(CGCGAATTCGCG)2 complexX-RAY DIFFRACTION1.6512B-form double helix,DNA dodecamer,double helix,feature,structure
61
2B0K|1|A+2B0K|1|B		Crystal structure of the DB921-D(CGCGAATTCGCG)2 complex.X-RAY DIFFRACTION1.6412B-form double helix,DNA dodecamer,double helix,feature,structure
62
360D|1|A+360D|1|B		STRUCTURE OF 2,5-BIS{[4-(N-ETHYLAMIDINO)PHENYL]}FURAN COMPLEXED TO 5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3'. A MINOR GROOVE DRUG COMPLEX, SHOWING PATTERNS OF GROOVE HYDRATIONX-RAY DIFFRACTION1.8512B-form double helix,DNA dodecamer,double helix,feature,structure
63
2GYX|1|A+2GYX|1|B		Crystal structure of DB884- D(CGCGAATTCGCG)2 complex at 1.86 A resolution.X-RAY DIFFRACTION1.8612B-form double helix,DNA dodecamer,double helix,feature,structure
64
7BNA|1|A+7BNA|1|B		ANISOTROPIC THERMAL-PARAMETER REFINEMENT OF THE DNA DODECAMER CGCGAATTCGCG BY THE SEGMENTED RIGID-BODY METHODX-RAY DIFFRACTION1.912B-form double helix,DNA dodecamer,double helix,feature,structure
65
456D|1|A+456D|1|B		MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATCCGCG): THE WATSON-CRICK TYPE N6-METHOXYADENOSINE/CYTIDINE BASE-PAIRS IN B-DNAX-RAY DIFFRACTION1.612B-form double helix,double helix,structure
66
1EDR|1|A+1EDR|1|B		MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG) AT 1.6 ANGSTROMX-RAY DIFFRACTION1.612B-form double helix,DNA dodecamer,double helix,feature,structure
67
1DPN|1|A+1DPN|1|B		B-DODECAMER CGCGAA(TAF)TCGCG WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINEX-RAY DIFFRACTION0.9512B-form double helix,DNA dodecamer,double helix,feature,structure
68
460D|1|A+460D|1|B		A "HYDRAT-ION SPINE" IN A B-DNA MINOR GROOVEX-RAY DIFFRACTION1.212B-form double helix,DNA dodecamer,double helix,feature,structure
69
461D|1|A+461D|1|B		A "HYDRAT-ION SPINE" IN A B-DNA MINOR GROOVEX-RAY DIFFRACTION1.512B-form double helix,DNA dodecamer,double helix,feature,structure
70
389D|1|A+389D|1|B		CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITYX-RAY DIFFRACTION1.5512B-form double helix,DNA dodecamer,double helix,feature,structure
71
455D|1|A+455D|1|B		A6/A18 INTER-STRAND DITHIOBIS(PROPANE)-CROSSLINKED DODECAMER (CGCGAATTCGCG)2X-RAY DIFFRACTION1.4312B-form double helix,DNA dodecamer,double helix,feature,structure
72
388D|1|A+388D|1|B		CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITYX-RAY DIFFRACTION1.5512B-form double helix,DNA dodecamer,double helix,feature,structure
73
436D|1|A+436D|1|B		THE DICKERSON-DREW B-DNA DODECAMER REVISITED-AT ATOMIC RESOLUTIONX-RAY DIFFRACTION1.112B-form double helix,DNA dodecamer,double helix,feature,structure
74
2DYW|1|A+2DYW|1|B		A Backbone binding DNA complexX-RAY DIFFRACTION1.1312B-form double helix,DNA dodecamer,double helix,feature,structure
75
1Z5T|1|A+1Z5T|1|B		Crystal Structure of [d(CGCGAA(Z3dU)(Z3dU)CGCG)]2, Z3dU:5-(3-aminopropyl)-2'-deoxyuridine, in presence of thallium I.X-RAY DIFFRACTION1.612B-form double helix,DNA dodecamer,double helix,feature,structure
76
2QEF|1|A+2QEF|1|B		X-ray structure of 7-deaza-dG and Z3dU modified duplex CGCGAATXCZCGX-RAY DIFFRACTION1.612B-form double helix,DNA dodecamer,double helix,feature,structure
77
1G8V|1|A+1G8V|1|B		MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNAX-RAY DIFFRACTION1.812B-form double helix,DNA dodecamer,double helix,feature,structure
78
1G8U|1|A+1G8U|1|B		MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNAX-RAY DIFFRACTION1.8512B-form double helix,DNA dodecamer,double helix,feature,structure
79
1VE8|1|A+1VE8|1|B		X-Ray analyses of oligonucleotides containing 5-formylcytosine, suggesting a structural reason for codon-anticodon recognition of mitochondrial tRNA-Met; Part 1, d(CGCGAATT(f5C)GCG)X-RAY DIFFRACTION1.6512B-form double helix,DNA dodecamer,double helix,feature,structure
80
2QEG|1|A+2QEG|1|B		B-DNA with 7-deaza-dG modificationX-RAY DIFFRACTION1.612B-form double helix,DNA dodecamer,double helix,feature,structure
81
1I3T|1|A+1I3T|1|B		MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATT(MO4)CGCG): THE WATSON-CRICK TYPE AND WOBBLE N4-METHOXYCYTIDINE/GUANOSINE BASE PAIRS IN B-DNAX-RAY DIFFRACTION1.612B-form double helix,DNA dodecamer,double helix,feature,structure
82
403D|1|A+403D|1|B		5'-D(*CP*GP*CP*(HYD)AP*AP*AP*TP*TP*TP*GP*CP*G)-3', 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLEX-RAY DIFFRACTION1.412B-form double helix,double helix,structure
83
2DPB|1|A+2DPB|1|B		Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridineX-RAY DIFFRACTION1.512B-form double helix,DNA dodecamer,double helix,feature,structure
84
127D|1|A+127D|1|B		DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') COMPLEXED WITH HOECHST 33258X-RAY DIFFRACTION212B-form double helix,DNA dodecamer,double helix,feature,structure
85
4DNB|1|A+4DNB|1|B		METHYLATION OF THE ECORI RECOGNITION SITE DOES NOT ALTER DNA CONFORMATION. THE CRYSTAL STRUCTURE OF D(CGCGAM6ATTCGCG) AT 2.0 ANGSTROMS RESOLUTIONX-RAY DIFFRACTION212B-form double helix,DNA dodecamer,double helix,feature,structure
86
1S2R|1|A+1S2R|1|B		A High Resolution Crystal Structure of [d(CGCAAATTTGCG)]2X-RAY DIFFRACTION1.5312B-form double helix,DNA dodecamer,double helix,feature,structure
87
3BAM|1|C+3BAM|1|E+3BAM|1|D		RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND MANGANESE IONS (POST-REACTIVE COMPLEX)X-RAY DIFFRACTION1.812B-form double helix,double helix,structureenzyme,hydrolase,nuclease
88
2BAM|1|C+2BAM|1|D		RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND CALCIUM IONS (PRE-REACTIVE COMPLEX).X-RAY DIFFRACTION212B-form double helix,double helix,structureenzyme,hydrolase,nuclease
89
1D3R|1|C+1D3R|1|D		CRYSTAL STRUCTURE OF TRIPLEX DNAX-RAY DIFFRACTION1.812structure,triple helix
90
1D3R|1|A+1D3R|1|B		CRYSTAL STRUCTURE OF TRIPLEX DNAX-RAY DIFFRACTION1.812structure,triple helix
91
463D|1|A+463D|1|B		CALCIUM FORM OF D(CGCGAATTCGCG)2X-RAY DIFFRACTION1.4512B-form double helix,DNA dodecamer,double helix,feature,structure
92
2RF3|1|A+2RF3|1|B		Crystal Structure of Tricyclo-DNA: An Unusual Compensatory Change of Two Adjacent Backbone Torsion AnglesX-RAY DIFFRACTION1.7512B-form double helix,DNA dodecamer,double helix,feature,structure
93
1EHV|1|A		A NEW CRYSTAL STRUCTURE FOR THE DODECAMER C-G-C-G-A-A-T-T-C-G-C-G: SYMMETRY EFFECTS ON SEQUENCE-DEPENDENT DNA STRUCTUREX-RAY DIFFRACTION1.812B-form double helix,DNA dodecamer,double helix,feature,structure
94
477D|1|A+477D|1|B		CALCIUM FORM OF THE B-DNA DODECAMER GGCGAATTCGCGX-RAY DIFFRACTION1.712B-form double helix,double helix,structure
95
2P8D|1|A		The Structure of the Dickerson Sequence with an Incorporated CeNA ResidueX-RAY DIFFRACTION1.912B-form double helix,double helix,structure
96
1OE4|1|E+1OE4|1|F		Xenopus SMUG1, an anti-mutator uracil-DNA GlycosylaseX-RAY DIFFRACTION212B-form double helix,double helix,structureenzyme,hydrolase
97
2P8D|1|B		The Structure of the Dickerson Sequence with an Incorporated CeNA ResidueX-RAY DIFFRACTION1.912B-form double helix,double helix,structure
98
3HTS|1|A		HEAT SHOCK TRANSCRIPTION FACTOR/DNA COMPLEXX-RAY DIFFRACTION1.7512B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
99
2VLA|1|L+2VLA|1|M		Crystal structure of restriction endonuclease BpuJI recognition domain in complex with cognate DNAX-RAY DIFFRACTION1.312B-form double helix,double helix,structureenzyme,hydrolase,nuclease
100
2AHI|1|E+2AHI|1|F		Structural Basis of DNA Recognition by p53 Tetramers (complex III)X-RAY DIFFRACTION1.8512B-form double helix,double helix,structureDNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
101
3EXJ|1|D+3EXJ|1|C		Crystal Structure of a p53 Core Tetramer Bound to DNAX-RAY DIFFRACTION212B-form double helix,double helix,structureDNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
102
2AHI|1|G+2AHI|1|H		Structural Basis of DNA Recognition by p53 Tetramers (complex III)X-RAY DIFFRACTION1.8512B-form double helix,double helix,structureDNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
103
3D0A|1|G+3D0A|1|H		Human p53 core domain with hot spot mutation R249S and second site suppressor mutation H168R in sequence-specific complex with DNAX-RAY DIFFRACTION1.812B-form double helix,double helix,structureDNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
104
2AC0|1|G+2AC0|1|H		Structural Basis of DNA Recognition by p53 Tetramers (complex I)X-RAY DIFFRACTION1.812DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
105
2O49|1|B+2O49|1|C		Crystal Structure of the N-terminal CUT domain of SATB1 Bound to Matrix Attachment Region DNAX-RAY DIFFRACTION212B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
106
2O4A|1|B+2O4A|1|C		Crystal Structure of the N-terminal CUT Domain of SATB1 Bound to Matrix Attachment Region DNAX-RAY DIFFRACTION1.7512B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
107
423D|1|A+423D|1|B		5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3'X-RAY DIFFRACTION1.612B-form double helix,double helix,structure
108
3QMD|1|C		Structural Basis of Selective Binding of Nonmethylated CpG Islands by the CXXC Domain of CFP1X-RAY DIFFRACTION1.916B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
109
3QMD|1|B		Structural Basis of Selective Binding of Nonmethylated CpG Islands by the CXXC Domain of CFP1X-RAY DIFFRACTION1.918B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
110
2E52|1|I+2E52|1|J		Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA at 2.0 angstrom resolutionX-RAY DIFFRACTION212B-form double helix,double helix,structureenzyme,hydrolase,nuclease
111
1N5C|1|A		Crystal Structure Analysis of the B-DNA Dodecamer CGCGAATT(ethenoC)GCGX-RAY DIFFRACTION1.7912B-form double helix,double helix,structure
112
2ZKD|1|C+2ZKD|1|D		Crystal structure of the SRA domain of mouse Np95 in complex with hemi-methylated CpG DNAX-RAY DIFFRACTION1.612B-form double helix,double helix,structureenzyme,ligase
113
2ZKD|1|E+2ZKD|1|F		Crystal structure of the SRA domain of mouse Np95 in complex with hemi-methylated CpG DNAX-RAY DIFFRACTION1.612B-form double helix,double helix,structureenzyme,ligase
114
3FDE|1|D+3FDE|1|E		Mouse UHRF1 SRA domain bound with hemi-methylated CpG DNA, crystal structure in space group C222(1) at 1.4 A resolutionX-RAY DIFFRACTION1.4112B-form double helix,double helix,structureenzyme,ligase
115
3FDE|1|C+3FDE|1|F		Mouse UHRF1 SRA domain bound with hemi-methylated CpG DNA, crystal structure in space group C222(1) at 1.4 A resolutionX-RAY DIFFRACTION1.4112B-form double helix,double helix,structureenzyme,ligase
116
3F8J|1|F+3F8J|1|G		Mouse UHRF1 SRA domain bound with hemi-methylated CpG, crystal structure in space group C222(1)X-RAY DIFFRACTION1.9912B-form double helix,double helix,structureenzyme,ligase
117
2C7R|1|C+2C7R|1|D		HhaI DNA methyltransferase (T250G mutant) complex with oligonucleotide containing 2-aminopurine as a target base (GPGC:GMGC) and SAHX-RAY DIFFRACTION1.912B-form double helix,double helix,structureenzyme,methylase,transferase
118
2C7P|1|C+2C7P|1|D		HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine opposite to the target base (GCGC:GMPC) and SAHX-RAY DIFFRACTION1.712B-form double helix,double helix,structureenzyme,methylase,transferase
119
3EEO|1|C+3EEO|1|D		M. HhaI co-crystallized with synthetic dsDNA containing a propane diol in place of the deoxycytidine residue targeted for methylation.X-RAY DIFFRACTION1.9412double helix,structureenzyme,methylase,transferase
120
3EY1|1|B		A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High ResolutionX-RAY DIFFRACTION1.612B-form double helix,DNA dodecamer,double helix,feature,structureenzyme,hydrolase,nuclease
121
3EY3|1|A+3EY3|1|B		A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High ResolutionX-RAY DIFFRACTION1.2512B-form double helix,DNA dodecamer,double helix,feature,structure
122
3EY3|1|C+3EY3|1|D		A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High ResolutionX-RAY DIFFRACTION1.2512B-form double helix,DNA dodecamer,double helix,feature,structure
123
3D0P|1|B		Insights into RNA/DNA hybrid recognition and processing by RNase H from the crystal structure of a non-specific enzyme-dsDNA complexX-RAY DIFFRACTION1.812B-form double helix,DNA dodecamer,double helix,feature,structureenzyme,hydrolase,nuclease
124
3I8D|1|B		The Pairing Geometry of the Hydrophobic Thymine Analog 2,4-Difluorotoluene in Duplex DNA as Analyzed by X-ray CrystallographyX-RAY DIFFRACTION1.6112B-form double helix,double helix,structureenzyme,hydrolase,nuclease
125
3D0A|1|E+3D0A|1|F		Human p53 core domain with hot spot mutation R249S and second site suppressor mutation H168R in sequence-specific complex with DNAX-RAY DIFFRACTION1.812B-form double helix,double helix,structureDNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
126
2AC0|1|E+2AC0|1|F		Structural Basis of DNA Recognition by p53 Tetramers (complex I)X-RAY DIFFRACTION1.812DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
127
3IGK|1|B		Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs (p53-DNA complex 2)X-RAY DIFFRACTION1.712DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
128
3IGL|1|B		Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs (p53-DNA complex 1)X-RAY DIFFRACTION1.812DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
129
1R2Z|1|B+1R2Z|1|C		MutM (Fpg) bound to 5,6-dihydrouracil (DHU) containing DNAX-RAY DIFFRACTION1.6312double helix,structureenzyme,hydrolase
130
2OFI|1|B+2OFI|1|C		Crystal Structure of 3-methyladenine DNA Glycosylase I (TAG) bound to DNA/3mAX-RAY DIFFRACTION1.8512B-form double helix,double helix,structureenzyme,hydrolase
131
3LPV|1|C+3LPV|1|D		X-ray crystal structure of duplex DNA containing a cisplatin 1,2-d(GpG) intrastrand cross-linkX-RAY DIFFRACTION1.7712DNA dodecamer,double helix,feature,structure
132
3LPV|1|A+3LPV|1|B		X-ray crystal structure of duplex DNA containing a cisplatin 1,2-d(GpG) intrastrand cross-linkX-RAY DIFFRACTION1.7712DNA dodecamer,double helix,feature,structure
133
2D47|1|A+2D47|1|B		MOLECULAR STRUCTURE OF A COMPLETE TURN OF A-DNAX-RAY DIFFRACTION212A-form double helix,double helix,structure

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0533 s