Equivalence class DNA_2.0_87055.2 Current
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2PKV|1|A+ 2PKV|1|B (rep) | 5'-D(*GP*GP*TP*AP*TP*AP*CP*C)-3' | D-(GGTATACC) ambient pressure | X-ray diffraction | 1.6 | 2007-07-24 | ||||
2 | 1PFE|1|A | 5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3' | Echinomycin-(gcgtacgc)2 complex | X-ray diffraction | 1.1 | 2004-06-08 | ||||
3 | 2HC7|1|A | 5'-D(*GP*(2ST)P*GP*TP*AP*CP*AP*C)-3' | 2'-selenium-T A-DNA [G(TSe)GTACAC] | X-ray diffraction | 1.4 | 2006-07-04 | ||||
4 | 3HG8|1|A | 5'-D(*GP*(UMS)P*GP*(US2)P*AP*CP*AP*C)-3' | Crystal Structure of 5-SMe Derivatized DNA | X-ray diffraction | 1.38 | 2009-07-21 | ||||
5 | 1Z7I|1|A | 5'-D(*GP*(UMS)P*GP*TP*AP*CP*AP*C)-3' | 2'-Me-Se Derivitation of A-DNA Octamer G(UMSe)GTACAC | X-ray diffraction | 1.28 | 2005-04-05 | ||||
6 | 1R3Z|1|A | 5'-D(*GP*(5CM)P*GP*(5CM)P*GP*CP*GP*C)-3' | Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers | X-ray diffraction | 1.7 | 2003-12-23 | ||||
7 | 3IFI|1|A | DNA (5'-D(*GP*TP*(XUG)P*TP*AP*CP*AP*C)-3') | 2'-SeMe-dG modified octamer DNA | X-ray diffraction | 1.2 | 2009-08-11 | ||||
8 | 3IKI|1|A | 5'-D(*GP*(UMS)P*GP*(US2)P*AP*CP*AP*C)-3' | 5-SMe-dU containing DNA octamer | X-ray diffraction | 1.38 | 2010-03-09 | ||||
9 | 3LTU|1|A | 5'-D(*GP*(UMS)P*GP*(T5S)P*AP*CP*AP*C)-3' | 5-SeMe-dU containing DNA 8mer | X-ray diffraction | 1.4 | 2010-03-09 | ||||
10 | 2PL4|1|A+ 2PL4|1|B | Synthetic DNA octamer | D-(GGTATACC) under 0.55 GPa hydrostatic pressure | X-ray diffraction | 1.65 | 2007-07-24 | ||||
11 | 3IJK|1|A | 5'-D(*GP*(UMS)P*GP*(T5O)P*AP*CP*AP*C)-3' | 5-OMe modified DNA 8mer | X-ray diffraction | 1.3 | 2009-10-06 | ||||
12 | 1XVK|1|A | 5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3' | X-ray structure of an Echinomycin-(GCGTACGC)2 complex | X-ray diffraction | 1.26 | 2005-04-12 | ||||
13 | 3GO3|1|A+ 3GO3|1|B | 5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3' | Interactions of an echinomycin-DNA complex with manganese(II) ions | X-ray diffraction | 1.1 | 2009-03-31 | ||||
14 | 2PL8|1|A+ 2PL8|1|B | 5'-D(*DGP*DGP*DTP*DAP*DTP*DAP*DCP*DC)-3' | D(GTATACC) under hydrostatic pressure of 1.04 GPa | X-ray diffraction | 1.65 | 2007-07-24 | ||||
15 | 3LTR|1|A | 5'-D(*GP*(UMS)P*GP*(T5O)P*AP*CP*AP*C)-3' | 5-OMe-dU containing DNA 8mer | X-ray diffraction | 1.3 | 2010-03-09 | ||||
16 | 2A7E|1|S | DNA (5'-D(*CP*CP*CP*TP*AP*GP*GP*G)-3') | On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- The Optimal Data Collection Wavelength | X-ray diffraction | 1.66 | 2005-07-19 | ||||
17 | 2NSK|1|A | 5'-D(*GP*(UMS)P*GP*(T4S)P*AP*CP*AP*C)-3' | Doubled Modified Selenium DNA | X-ray diffraction | 1.5 | 2006-11-14 | ||||
18 | 1R41|1|A | 5'-D(*GP*CP*GP*CP*GP*(5CM)P*GP*(5CM))-3' | Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers | X-ray diffraction | 1.9 | 2003-12-23 | ||||
19 | 3HGD|1|A+ 3HGD|1|B | 5'-D(*GP*(UMS)P*GP*(US3)P*AP*CP*AP*C)-3' | Crystal Structure of 2-Se-Thymidine Derivatized DNA | X-ray diffraction | 1.57 | 2009-08-18 | ||||
20 | 2GPX|1|A | 5'-D(*GP*(UMS)P*GP*(BRU)P*AP*CP*AP*C)-3' | 2'-Me-Se and Br Derivitation of A-DNA Octamer G(UMS)G(BRU)ACAC | X-ray diffraction | 1.6 | 2006-05-23 | ||||
21 | 3KXT|1|B+ 3KXT|1|C | 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3' | Crystal structure of Sulfolobus Cren7-dsDNA complex | X-ray diffraction | 1.602 | 2010-06-09 | ||||
22 | 3K18|1|A | 5'-D(*GP*(UMS)P*GP*(TTI)P*AP*CP*AP*C)-3' | Tellurium modified DNA-8mer | X-ray diffraction | 1.5 | 2010-10-06 | ||||
23 | 1WTO|1|B+ 1WTO|1|C | 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3' | Hyperthermophile chromosomal protein SAC7D double mutant V26F/M29F in complex with DNA GCGATCGC | X-ray diffraction | 1.5 | 2005-02-22 | ||||
24 | 2PLB|1|A+ 2PLB|1|B | 5'-D(*DGP*DGP*DTP*DAP*DTP*DAP*DCP*DC)-3' | D(GTATACC) under hydrostatic pressure of 1.39 GPa | X-ray diffraction | 1.6 | 2007-07-24 | ||||
25 | 1XVN|1|A | 5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3' | echinomycin (ACGTACGT)2 complex | X-ray diffraction | 1.5 | 2005-04-12 | ||||
26 | 1WTQ|1|B+ 1WTQ|1|C | 5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3' | Hyperthermophile chromosomal protein SAC7D single mutant M29F in complex with DNA GTAATTAC | X-ray diffraction | 1.7 | 2005-02-22 | ||||
27 | 1WTV|1|B+ 1WTV|1|C | 5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3' | Hyperthermophile chromosomal protein SAC7D single mutant M29A in complex with DNA GTAATTAC | X-ray diffraction | 1.6 | 2005-02-22 | ||||
28 | 2ADW|1|A+ 2ADW|1|C | 5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3' | Crystal structure of Echinomycin-(ACGTACGT)2 solved by SAD | X-ray diffraction | 1.6 | 2006-03-28 | ||||
29 | 2ADW|1|E+ 2ADW|1|G | 5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3' | Crystal structure of Echinomycin-(ACGTACGT)2 solved by SAD | X-ray diffraction | 1.6 | 2006-03-28 | ||||
30 | 2H05|1|A | 5'-D(*GP*TP*GP*(BRU)P*AP*CP*AP*C)-3' | Br Derivitation of A-DNA Octamer GTG(Ubr)ACAC | X-ray diffraction | 1.8 | 2006-05-23 | ||||
31 | 3BM0|1|A | 5'-D(*GP*(2'-Se-U)P*GP*(5-Se-U)P*AP*CP*AP*C)-3' | Structure of DNA Octamer G(dUSe)G(5-SedU)ACAC | X-ray diffraction | 1.8 | 2008-06-10 | ||||
32 | 1XYI|1|B+ 1XYI|1|C | 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3' | Hyperthermophile chromosomal protein Sac7d double mutant Val26Ala/Met29Ala in complex with DNA GCGATCGC | X-ray diffraction | 1.45 | 2005-02-08 | ||||
33 | 1UE4|1|A | 5'-D(*GP*CP*GP*AP*AP*AP*GP*C)-3' | Crystal structure of d(GCGAAAGC) | X-ray diffraction | 1.65 | 2004-03-09 | ||||
34 | 3LWH|1|B+ 3LWH|1|C | DNA (5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3') | Crystal structure of Cren7-dsDNA complex | X-ray diffraction | 1.9 | 2010-05-26 | ||||
35 | 2W42|1|P+ 2W42|1|Q | 5'-D(*TP*TP*CP*GP*AP*CP*GP*CP)-3', 5'-D(*GP*TP*CP*GP*AP*AP*TP*TP)-3' | Homo sapiens | THE STRUCTURE OF A PIWI PROTEIN FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH A 16NT DNA DUPLEX. | X-ray diffraction | 1.9 | 2008-12-09 | |||
36 | 2W42|1|R+ 2W42|1|S | 5'-D(*TP*TP*CP*GP*AP*CP*GP*CP)-3', 5'-D(*GP*TP*CP*GP*AP*AP*TP*TP)-3' | Homo sapiens | THE STRUCTURE OF A PIWI PROTEIN FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH A 16NT DNA DUPLEX. | X-ray diffraction | 1.9 | 2008-12-09 | |||
37 | 2FJW|1|B+ 2FJW|1|G | 5'-D(*CP*TP*TP*GP*AP*AP*TP*G)-3', 5'-D(P*CP*AP*TP*TP*CP*AP*AP*G)-3' | d(CTTGAATGCATTCAAG) in complex with MMLV RT catalytic fragment | X-ray diffraction | 1.95 | 2006-06-27 | ||||
38 | 3C2J|1|A+ 3C2J|1|B | DNA (5'-D(*DAP*DAP*DCP*DCP*DGP*DGP*DTP*DT)-3') | Crystal structure analysis of trioxacarcin A covalently bound to d(AACCGGTT) | X-ray diffraction | 1.78 | 2008-06-03 | ||||
39 | 3IJN|1|A | 5'-D(*GP*(UMS)P*GP*TP*AP*(5SE)P*AP*C)-3' | 5-SeMe-Cytidine modified DNA 8mer | X-ray diffraction | 1.8 | 2009-10-06 | ||||
40 | 1WTR|1|B+ 1WTR|1|C | 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3' | Hyperthermophile chromosomal protein SAC7D single mutant M29A in complex with DNA GCGATCGC | X-ray diffraction | 1.8 | 2005-02-22 | ||||
41 | 1WTP|1|C+ 1WTP|1|D | 5'-D(*GP*CP*GP*AP*(BRU)P*CP*GP*C)-3' | Hyperthermophile chromosomal protein SAC7D single mutant M29F in complex with DNA GCGA(UBr)CGC | X-ray diffraction | 1.9 | 2005-02-22 | ||||
42 | 1WTP|1|E+ 1WTP|1|F | 5'-D(*GP*CP*GP*AP*(BRU)P*CP*GP*C)-3' | Hyperthermophile chromosomal protein SAC7D single mutant M29F in complex with DNA GCGA(UBr)CGC | X-ray diffraction | 1.9 | 2005-02-22 | ||||
43 | 1VAQ|1|A+ 1VAQ|1|B | 5'-D(*TP*TP*GP*GP*CP*CP*AP*A)-3' | synthetic construct | Crystal structure of the Mg2+-(chromomycin A3)2-d(TTGGCCAA)2 complex reveals GGCC binding specificity of the drug dimer chelated by metal ion | X-ray diffraction | 2 | 2004-06-22 | |||
44 | 2R2T|1|B+ 2R2T|1|G | DNA (5'-D(*DAP*DTP*DTP*DTP*DAP*DGP*DTP*DT)-3'), DNA (5'-D(P*DAP*DAP*DCP*DTP*DAP*DAP*DAP*DT)-3') | d(ATTTAGTTAACTAAAT) complexed with MMLV RT catalytic fragment | X-ray diffraction | 2 | 2008-07-22 | ||||
45 | 1VAQ|1|C+ 1VAQ|1|D | 5'-D(*TP*TP*GP*GP*CP*CP*AP*A)-3' | synthetic construct | Crystal structure of the Mg2+-(chromomycin A3)2-d(TTGGCCAA)2 complex reveals GGCC binding specificity of the drug dimer chelated by metal ion | X-ray diffraction | 2 | 2004-06-22 | |||
46 | 3KQ8|1|A | 5'-D(*GP*(UMS)P*GP*(TTI)P*AP*CP*AP*C)-3' | 5-Te-uridine derivatized DNA-8mer | X-ray diffraction | 1.6 | 2010-11-17 | ||||
47 | 284D|1|A+ 284D|1|B | DNA (5'-CD(*P*AP*TP*TP*CP*AP*TP*TP*C)-3') | THE BI-LOOP, A NEW GENERAL FOUR-STRANDED DNA MOTIF | X-ray diffraction | 1.1 | 1997-06-11 | ||||
48 | 454D|1|A+ 454D|1|B | 5'-D(*GP*(5IU)P*TP*GP*CP*AP*AP*C)-3' | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-ray diffraction | 1.2 | 2000-02-21 | ||||
49 | 454D|1|C+ 454D|1|D | 5'-D(*GP*(5IU)P*TP*GP*CP*AP*AP*C)-3' | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-ray diffraction | 1.2 | 2000-02-21 | ||||
50 | 454D|1|E+ 454D|1|F | 5'-D(*GP*(5IU)P*TP*GP*CP*AP*AP*C)-3' | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-ray diffraction | 1.2 | 2000-02-21 | ||||
51 | 454D|1|G+ 454D|1|H | 5'-D(*GP*(5IU)P*TP*GP*CP*AP*AP*C)-3' | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-ray diffraction | 1.2 | 2000-02-21 | ||||
52 | 454D|1|I+ 454D|1|J | 5'-D(*GP*(5IU)P*TP*GP*CP*AP*AP*C)-3' | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-ray diffraction | 1.2 | 2000-02-21 | ||||
53 | 3MBS|1|B | Peptide Nucleic Acid | Crystal structure of 8mer PNA | X-ray diffraction | 1.27 | 2011-03-30 | ||||
54 | 3MBS|1|A | Peptide Nucleic Acid | Crystal structure of 8mer PNA | X-ray diffraction | 1.27 | 2011-03-30 | ||||
55 | 3MBS|1|C | Peptide Nucleic Acid | Crystal structure of 8mer PNA | X-ray diffraction | 1.27 | 2011-03-30 | ||||
56 | 3MBS|1|D | Peptide Nucleic Acid | Crystal structure of 8mer PNA | X-ray diffraction | 1.27 | 2011-03-30 | ||||
57 | 1D78|1|A | DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3') | HIGH RESOLUTION REFINEMENT OF THE HEXAGONAL A-DNA OCTAMER D(GTGTACAC) AT 1.4 ANGSTROMS RESOLUTION | X-ray diffraction | 1.4 | 1993-04-15 | ||||
58 | 2PLO|1|A+ 2PLO|1|B | 5'-D(*DGP*DGP*DTP*DAP*DTP*DAP*DCP*DC)-3' | D-(GTATACC) low temperature (100K) | X-ray diffraction | 1.4 | 2008-05-27 | ||||
59 | 1D79|1|A | DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3') | HIGH RESOLUTION REFINEMENT OF THE HEXAGONAL A-DNA OCTAMER D(GTGTACAC) AT 1.4 ANGSTROMS RESOLUTION | X-ray diffraction | 1.45 | 1993-04-15 | ||||
60 | 1C8C|1|B+ 1C8C|1|C | 5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3' | CRYSTAL STRUCTURES OF THE CHROMOSOMAL PROTEINS SSO7D/SAC7D BOUND TO DNA CONTAINING T-G MISMATCHED BASE PAIRS | X-ray diffraction | 1.45 | 2001-05-04 | ||||
61 | 344D|1|A | DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*(BRU))-3') | DETERMINATION BY MAD-DM OF THE STRUCTURE OF THE DNA DUPLEX D(ACGTACG(5-BRU))2 AT 1.46A AND 100K | X-ray diffraction | 1.46 | 1997-09-26 | ||||
62 | 3FA1|1|A | 5'-D(*DGP*(UMS)P*DGP*(TTI)P*DAP*DCP*DAP*DC)-3' | Crystal Structure of Tellurium Derivatized DNA | X-ray diffraction | 1.5 | 2009-01-27 | ||||
63 | 2DLJ|1|A | 5'-D(*GP*(UMS)P*GP*(BRU)P*AP*CP*AP*C)-3' | 2'-Me-Se and Br Derivitation of A-DNA Octamer G(UMS)G(BRU)ACAC | X-ray diffraction | 1.5 | 2006-05-23 | ||||
64 | 295D|1|A | DNA (5'-D(*AP*TP*GP*CP*GP*CP*AP*T)-3') | CRYSTAL AND SOLUTION STRUCTURES OF THE OLIGONUCLEOTIDE D(ATGCGCAT)2: A COMBINED X-RAY AND NMR STUDY | X-ray diffraction | 1.5 | 1996-12-04 | ||||
65 | 2H0N|1|A | 5'-(*(XGL)P*(XTL)P*(XGL)P*(XTL)P*(XAL)P*(XCL)P*(XAL)P*(XCL)-Phosphate)-3' | Structure of the fully modified left-handed cyclohexene nucleic acid sequence GTGTACAC | X-ray diffraction | 1.53 | 2007-04-24 | ||||
66 | 2H0N|1|B | 5'-(*(XGL)P*(XTL)P*(XGL)P*(XTL)P*(XAL)P*(XCL)P*(XAL)P*(XCL)-Phosphate)-3' | Structure of the fully modified left-handed cyclohexene nucleic acid sequence GTGTACAC | X-ray diffraction | 1.53 | 2007-04-24 | ||||
67 | 1JUX|1|A | 5'-D(*IP*TP*IP*TP*AP*CP*AP*C)-3' | 1.6A Resolution Crystal Structures of the DNA Octamers d(IUATATAC) and d(ITITACAC):Binding of Two Distamycin Drugs Side-by-Side | X-ray diffraction | 1.6 | 2004-01-27 | ||||
68 | 340D|1|A | DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*CP*GP*C)-3') | STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA | X-ray diffraction | 1.6 | 1997-07-21 | ||||
69 | 2DZ7|1|A | DNA (5'-D(*DGP*DCP*DGP*DAP*DAP*DAP*DGP*DC)-3') | DNA Octaplex Formation with an I-Motif of A-Quartets: The Revised Crystal Structure of d(GCGAAAGC) | X-ray diffraction | 1.6 | 2007-08-14 | ||||
70 | 368D|1|A+ 368D|1|B | DNA (5'-D(P*CP*CP*CP*GP*CP*GP*GP*G)-3') | STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG) | X-ray diffraction | 1.6 | 1998-07-15 | ||||
71 | 306D|1|A | DNA (5'-D(*IP*CP*IP*TP*AP*CP*IP*C)-3') | SIDE-BY-SIDE BINDING OF DISTAMYCIN MOLECULES TO D(ICITACIC) | X-ray diffraction | 1.6 | 1997-09-22 | ||||
72 | 481D|1|A | 5'-H(*(6HG)P*(6HT)P*(6HG)P*(6HT)P*(6HA)P*(6HC)P*(6HA)P*(6HC))-3' | CRYSTAL STRUCTURE OF A HEXITOL NUCLEIC ACID (HNA) DUPLEX AT 1.6A RESOLUTION | X-ray diffraction | 1.6 | 2002-04-27 | ||||
73 | 1AZP|1|B+ 1AZP|1|C | DNA (5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3') | HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX | X-ray diffraction | 1.6 | 1999-01-13 | ||||
74 | 1BF4|1|B+ 1BF4|1|C | DNA (5'-D(*GP*CP*GP*TP*5IUP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*AP*AP*CP*GP*C)-3') | CHROMOSOMAL DNA-BINDING PROTEIN SSO7D/D(GCGAACGC) COMPLEX | X-ray diffraction | 1.6 | 1999-11-10 | ||||
75 | 118D|1|A | DNA (5'-D(*GP*TP*GP*CP*GP*CP*AP*C)-3') | CRYSTAL AND MOLECULAR STRUCTURE OF D(GTGCGCAC): INVESTIGATION OF THE EFFECTS OF BASE SEQUENCE ON THE CONFORMATION OF OCTAMER DUPLEXES | X-ray diffraction | 1.64 | 1993-02-11 | ||||
76 | 370D|1|A+ 370D|1|B | DNA (5'-D(P*CP*CP*CP*GP*CP*GP*GP*G)-3') | synthetic construct | STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG) | X-ray diffraction | 1.67 | 1998-07-15 | |||
77 | 1V3O|1|A+ 1V3O|1|B | 5'-D(*GP*(C38)P*GP*AP*GP*AP*GP*C)-3' | Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex | X-ray diffraction | 1.7 | 2004-06-08 | ||||
78 | 115D|1|A+ 115D|1|B | DNA (5'-D(*GP*GP*(BRU)P*AP*(BRU)P*AP*CP*C)-3') | ORDERED WATER STRUCTURE IN AN A-DNA OCTAMER AT 1.7 ANGSTROMS RESOLUTION | X-ray diffraction | 1.7 | 1993-07-15 | ||||
79 | 1UHY|1|A | 5'-D(*GP*(CBR)P*GP*AP*TP*AP*GP*C)-3' | Crystal structure of d(GCGATAGC): the base-intercalated duplex | X-ray diffraction | 1.7 | 2004-02-03 | ||||
80 | 2D94|1|A | DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*C)-3') | THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT | X-ray diffraction | 1.7 | 1994-01-15 | ||||
81 | 1D90|1|A+ 1D90|1|B | DNA (5'-D(*GP*GP*IP*GP*CP*TP*CP*C)-3') | REFINED CRYSTAL STRUCTURE OF AN OCTANUCLEOTIDE DUPLEX WITH I.T MISMATCHED BASE PAIRS | X-ray diffraction | 1.7 | 1993-07-15 | ||||
82 | 2H9S|1|A | 5'-D(*(XCT)P*(XGU)P*(XAD)P*(XAD)P*(XTH)P*(XTH)P*(XCT)P*(XGU))-3' | Crystal Structure of Homo-DNA and Nature's Choice of Pentose over Hexose in the Genetic System | X-ray diffraction | 1.75 | 2006-12-12 | ||||
83 | 341D|1|A | DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*CP*GP*C)-3') | STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA | X-ray diffraction | 1.75 | 1997-07-21 | ||||
84 | 2H9S|1|B | 5'-D(*(XCT)P*(XGU)P*(XAD)P*(XAD)P*(XTH)P*(XTH)P*(XCT)P*(XGU))-3' | Crystal Structure of Homo-DNA and Nature's Choice of Pentose over Hexose in the Genetic System | X-ray diffraction | 1.75 | 2006-12-12 | ||||
85 | 3FSI|1|B+ 3FSI|1|G | 5'-D(P*GP*AP*AP*TP*TP*AP*AP*G)-3', 5'-D(*CP*TP*TP*AP*AP*TP*TP*C)-3' | Crystal structure of a trypanocidal 4,4'-Bis(imidazolinylamino)diphenylamine bound to DNA | X-ray diffraction | 1.75 | 2009-05-19 | ||||
86 | 9DNA|1|A | DNA (5'-D(*GP*CP*CP*CP*GP*GP*GP*C)-3') | CRYSTAL STRUCTURE ANALYSIS OF AN A-DNA FRAGMENT AT 1.8 ANGSTROMS RESOLUTION. D(GCCCGGGC) | X-ray diffraction | 1.8 | 1988-01-16 | ||||
87 | 1VJ4|1|A+ 1VJ4|1|B | 5'-D(*GP*GP*TP*AP*TP*AP*CP*C)-3' | SEQUENCE-DEPENDENT CONFORMATION OF AN A-DNA DOUBLE HELIX: THE CRYSTAL STRUCTURE OF THE OCTAMER D(G-G-T-A-T-A-C-C) | X-ray diffraction | 1.8 | 1989-01-11 | ||||
88 | 159D|1|A | DNA (5'-D(*IP*CP*IP*CP*IP*CP*IP*C)-3') | SIDE BY SIDE BINDING OF TWO DISTAMYCIN A DRUGS IN THE MINOR GROOVE OF AN ALTERNATING B-DNA DUPLEX | X-ray diffraction | 1.8 | 1995-02-07 | ||||
89 | 1V3N|1|A+ 1V3N|1|B | 5'-D(*GP*(CBR)P*GP*AP*GP*AP*GP*C)-3' | Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex | X-ray diffraction | 1.8 | 2004-06-08 | ||||
90 | 1ZTW|1|B+ 1ZTW|1|G | CTTAATTC, GAATTAAG | d(CTTAATTCGAATTAAG) complexed with Moloney Murine Leukemia Virus Reverse Transcriptase catalytic fragment | X-ray diffraction | 1.8 | 2005-08-30 | ||||
91 | 2FJX|1|B+ 2FJX|1|G | 5'-D(*CP*TP*TP*GP*AP*AP*TP*G)-3', 5'-D(P*CP*AP*TP*TP*CP*AP*AP*G)-3' | RT29 bound to D(CTTGAATGCATTCAAG) in complex with MMLV RT catalytic fragment | X-ray diffraction | 1.8 | 2006-06-27 | ||||
92 | 337D|1|A | DNA (5'-D(*GP*CP*GP*(5CM)P*GP*(5CM)P*GP*C)-3') | STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA | X-ray diffraction | 1.85 | 1997-07-21 | ||||
93 | 345D|1|A | DNA (5'-D(*GP*(5CM)P*GP*CP*GP*CP*GP*C)-3') | STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA | X-ray diffraction | 1.85 | 1997-08-29 | ||||
94 | 338D|1|A | DNA (5'-D(*GP*(5CM)P*GP*CP*GP*CP*GP*C)-3') | STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA | X-ray diffraction | 1.85 | 1997-07-21 | ||||
95 | 1ZTT|1|B+ 1ZTT|1|G | 5'-D(*CP*TP*TP*AP*AP*TP*TP*C)-3', 5'-D(P*GP*AP*AP*TP*TP*AP*AP*G)-3' | Netropsin bound to d(CTTAATTCGAATTAAG) in complex with MMLV RT catalytic fragment | X-ray diffraction | 1.85 | 2005-08-30 | ||||
96 | 371D|1|A+ 371D|1|B | DNA (5'-D(P*CP*CP*CP*GP*CP*GP*GP*G)-3') | synthetic construct | STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG) | X-ray diffraction | 1.9 | 1998-07-15 | |||
97 | 243D|1|A | DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3') | STRUCTURE OF THE DNA OCTANUCLEOTIDE D(ACGTACGT)2 | X-ray diffraction | 1.9 | 1996-02-26 | ||||
98 | 317D|1|A | DNA (5'-D(*CP*CP*CP*TP*AP*GP*GP*G)-3') | STRUCTURE OF D(CCTAGGG): COMPARISON WITH NINE ISOMORPHOUS OCTAMER SEQUENCES REVEALS FOUR DISTINCT PATTERNS OF SEQUENCE-DEPENDENT INTERMOLECULAR INTERACTIONS | X-ray diffraction | 1.9 | 1997-05-22 | ||||
99 | 369D|1|A+ 369D|1|B | DNA (5'-D(P*CP*CP*CP*GP*CP*GP*GP*G)-3') | synthetic construct | STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG) | X-ray diffraction | 1.9 | 1998-07-15 | |||
100 | 304D|1|A | DNA (5'-D(*IP*CP*AP*TP*AP*TP*IP*C)-3') | SIDE-BY-SIDE BINDING OF DISTAMYCIN MOLECULES TO D(ICATATIC) IN THE MONOCLINIC FORM | X-ray diffraction | 1.9 | 1997-09-25 | ||||
101 | 1ESG|1|C+ 1ESG|1|D | DNA (5'-D(*TP*GP*GP*AP*TP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*AP*TP*CP*CP*A)-3') | RESTRICTION ENDONUCLEASE BAMHI BOUND TO A NON-SPECIFIC DNA. | X-ray diffraction | 1.9 | 2000-05-31 | ||||
102 | 1AZQ|1|B+ 1AZQ|1|C | DNA (5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3') | HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX | X-ray diffraction | 1.94 | 1999-01-13 | ||||
103 | 2D95|1|A | DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*C)-3') | LOW-TEMPERATURE STUDY OF THE A-DNA FRAGMENT D(GGGCGCCC) | X-ray diffraction | 2 | 1994-01-15 | ||||
104 | 1UHX|1|A | 5'-D(*GP*(CBR)P*GP*AP*GP*AP*GP*C)-3' | Crystal structure of d(GCGAGAGC): the base-intercalated duplex | X-ray diffraction | 2 | 2004-02-03 | ||||
105 | 1DNS|1|A | DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3') | BASE ONLY BINDING OF SPERMINE IN THE DEEP GROOVE OF THE A-DNA OCTAMER D(GTGTACAC) | X-ray diffraction | 2 | 1990-04-15 | ||||
106 | 1VS2|1|A | 5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3' | Interactions of quinoxaline antibiotic and DNA: the molecular structure of a TRIOSTIN A-D(GCGTACGC) complex | X-ray diffraction | 2 | 2006-06-27 | ||||
107 | 1BNZ|1|B+ 1BNZ|1|C | 5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3' | SSO7D HYPERTHERMOPHILE PROTEIN/DNA COMPLEX | X-ray diffraction | 2 | 1998-11-11 | ||||
108 | 2DNJ|1|B+ 2DNJ|1|C | 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3', 5'-D(*GP*CP*GP*AP*TP*C)-3' | DNASE I-INDUCED DNA CONFORMATION. 2 ANGSTROMS STRUCTURE OF A DNASE I-OCTAMER COMPLEX | X-ray diffraction | 2 | 1994-01-31 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 2H9S|1|B | Crystal Structure of Homo-DNA and Nature's Choice of Pentose over Hexose in the Genetic System | X-RAY DIFFRACTION | 1.75 | 8 | NAKB_NA_annotation | NAKB_protein_annotation |
2 | 1UHX|1|A | Crystal structure of d(GCGAGAGC): the base-intercalated duplex | X-RAY DIFFRACTION | 2 | 8 | NAKB_NA_annotation | NAKB_protein_annotation |
3 | 3KQ8|1|A | 5-Te-uridine derivatized DNA-8mer | X-RAY DIFFRACTION | 1.6 | 8 | A-form double helix,double helix,structure | |
4 | 1V3N|1|A+1V3N|1|B | Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex | X-RAY DIFFRACTION | 1.8 | 8 | I-motif,parallel helix,structure | |
5 | 1V3O|1|A+1V3O|1|B | Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex | X-RAY DIFFRACTION | 1.7 | 8 | I-motif,parallel helix,structure | |
6 | 341D|1|A | STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA | X-RAY DIFFRACTION | 1.75 | 8 | A-form double helix,double helix,structure | |
7 | 2DLJ|1|A | 2'-Me-Se and Br Derivitation of A-DNA Octamer G(UMS)G(BRU)ACAC | X-RAY DIFFRACTION | 1.5 | 8 | A-form double helix,double helix,structure | |
8 | 1Z7I|1|A | 2'-Me-Se Derivitation of A-DNA Octamer G(UMSe)GTACAC | X-RAY DIFFRACTION | 1.28 | 8 | A-form double helix,double helix,structure | |
9 | 2PL8|1|A+2PL8|1|B | D(GTATACC) under hydrostatic pressure of 1.04 GPa | X-RAY DIFFRACTION | 1.65 | 8 | A-form double helix,double helix,structure | |
10 | 2PLB|1|A+2PLB|1|B | D(GTATACC) under hydrostatic pressure of 1.39 GPa | X-RAY DIFFRACTION | 1.6 | 8 | A-form double helix,double helix,structure | |
11 | 2PL4|1|A+2PL4|1|B | D-(GGTATACC) under 0.55 GPa hydrostatic pressure | X-RAY DIFFRACTION | 1.65 | 8 | A-form double helix,double helix,structure | |
12 | 2HC7|1|A | 2'-selenium-T A-DNA [G(TSe)GTACAC] | X-RAY DIFFRACTION | 1.4 | 8 | A-form double helix,double helix,structure | |
13 | 3BM0|1|A | Structure of DNA Octamer G(dUSe)G(5-SedU)ACAC | X-RAY DIFFRACTION | 1.8 | 8 | A-form double helix,double helix,structure | |
14 | 2H05|1|A | Br Derivitation of A-DNA Octamer GTG(Ubr)ACAC | X-RAY DIFFRACTION | 1.8 | 8 | A-form double helix,double helix,structure | |
15 | 3HGD|1|A+3HGD|1|B | Crystal Structure of 2-Se-Thymidine Derivatized DNA | X-RAY DIFFRACTION | 1.57 | 8 | A-form double helix,double helix,structure | |
16 | 2D95|1|A | LOW-TEMPERATURE STUDY OF THE A-DNA FRAGMENT D(GGGCGCCC) | X-RAY DIFFRACTION | 2 | 8 | A-form double helix,double helix,structure | |
17 | 340D|1|A | STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA | X-RAY DIFFRACTION | 1.6 | 8 | A-form double helix,double helix,structure | |
18 | 370D|1|A+370D|1|B | STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG) | X-RAY DIFFRACTION | 1.67 | 8 | A-form double helix,double helix,structure | |
19 | 1VS2|1|A | Interactions of quinoxaline antibiotic and DNA: the molecular structure of a TRIOSTIN A-D(GCGTACGC) complex | X-RAY DIFFRACTION | 2 | 8 | double helix,structure | |
20 | 2ADW|1|E+2ADW|1|G | Crystal structure of Echinomycin-(ACGTACGT)2 solved by SAD | X-RAY DIFFRACTION | 1.6 | 8 | bis-intercalating,double helix,ligand,structure | |
21 | 1R41|1|A | Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers | X-RAY DIFFRACTION | 1.9 | 8 | A-form double helix,double helix,structure | |
22 | 2FJX|1|B+2FJX|1|G | RT29 bound to D(CTTGAATGCATTCAAG) in complex with MMLV RT catalytic fragment | X-RAY DIFFRACTION | 1.8 | 8 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
23 | 2FJW|1|B+2FJW|1|G | d(CTTGAATGCATTCAAG) in complex with MMLV RT catalytic fragment | X-RAY DIFFRACTION | 1.95 | 8 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
24 | 1ZTW|1|B+1ZTW|1|G | d(CTTAATTCGAATTAAG) complexed with Moloney Murine Leukemia Virus Reverse Transcriptase catalytic fragment | X-RAY DIFFRACTION | 1.8 | 8 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
25 | 3GO3|1|A+3GO3|1|B | Interactions of an echinomycin-DNA complex with manganese(II) ions | X-RAY DIFFRACTION | 1.1 | 8 | bis-intercalating,double helix,ligand,structure | |
26 | 1XVK|1|A | X-ray structure of an Echinomycin-(GCGTACGC)2 complex | X-RAY DIFFRACTION | 1.26 | 8 | bis-intercalating,double helix,ligand,structure | |
27 | 2ADW|1|A+2ADW|1|C | Crystal structure of Echinomycin-(ACGTACGT)2 solved by SAD | X-RAY DIFFRACTION | 1.6 | 8 | bis-intercalating,double helix,ligand,structure | |
28 | 345D|1|A | STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA | X-RAY DIFFRACTION | 1.85 | 8 | A-form double helix,double helix,structure | |
29 | 2NSK|1|A | Doubled Modified Selenium DNA | X-RAY DIFFRACTION | 1.5 | 8 | A-form double helix,double helix,structure | |
30 | 1R3Z|1|A | Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers | X-RAY DIFFRACTION | 1.7 | 8 | A-form double helix,double helix,structure | |
31 | 1UE4|1|A | Crystal structure of d(GCGAAAGC) | X-RAY DIFFRACTION | 1.65 | 8 | NAKB_NA_annotation | NAKB_protein_annotation |
32 | 2A7E|1|S | On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- The Optimal Data Collection Wavelength | X-RAY DIFFRACTION | 1.66 | 8 | double helix,structure | |
33 | 317D|1|A | STRUCTURE OF D(CCTAGGG): COMPARISON WITH NINE ISOMORPHOUS OCTAMER SEQUENCES REVEALS FOUR DISTINCT PATTERNS OF SEQUENCE-DEPENDENT INTERMOLECULAR INTERACTIONS | X-RAY DIFFRACTION | 1.9 | 8 | A-form double helix,double helix,structure | |
34 | 1XVN|1|A | echinomycin (ACGTACGT)2 complex | X-RAY DIFFRACTION | 1.5 | 8 | bis-intercalating,double helix,ligand,structure | |
35 | 1VAQ|1|C+1VAQ|1|D | Crystal structure of the Mg2+-(chromomycin A3)2-d(TTGGCCAA)2 complex reveals GGCC binding specificity of the drug dimer chelated by metal ion | X-RAY DIFFRACTION | 2 | 8 | double helix,structure | |
36 | 1VAQ|1|A+1VAQ|1|B | Crystal structure of the Mg2+-(chromomycin A3)2-d(TTGGCCAA)2 complex reveals GGCC binding specificity of the drug dimer chelated by metal ion | X-RAY DIFFRACTION | 2 | 8 | double helix,structure | |
37 | 2GPX|1|A | 2'-Me-Se and Br Derivitation of A-DNA Octamer G(UMS)G(BRU)ACAC | X-RAY DIFFRACTION | 1.6 | 8 | A-form double helix,double helix,structure | |
38 | 3HG8|1|A | Crystal Structure of 5-SMe Derivatized DNA | X-RAY DIFFRACTION | 1.38 | 8 | A-form double helix,double helix,structure | |
39 | 1D90|1|A+1D90|1|B | REFINED CRYSTAL STRUCTURE OF AN OCTANUCLEOTIDE DUPLEX WITH I.T MISMATCHED BASE PAIRS | X-RAY DIFFRACTION | 1.7 | 8 | double helix,structure | |
40 | 118D|1|A | CRYSTAL AND MOLECULAR STRUCTURE OF D(GTGCGCAC): INVESTIGATION OF THE EFFECTS OF BASE SEQUENCE ON THE CONFORMATION OF OCTAMER DUPLEXES | X-RAY DIFFRACTION | 1.64 | 8 | A-form double helix,double helix,structure | |
41 | 338D|1|A | STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA | X-RAY DIFFRACTION | 1.85 | 8 | A-form double helix,double helix,structure | |
42 | 1ESG|1|C+1ESG|1|D | RESTRICTION ENDONUCLEASE BAMHI BOUND TO A NON-SPECIFIC DNA. | X-RAY DIFFRACTION | 1.9 | 8 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
43 | 1D78|1|A | HIGH RESOLUTION REFINEMENT OF THE HEXAGONAL A-DNA OCTAMER D(GTGTACAC) AT 1.4 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 1.4 | 8 | A-form double helix,double helix,structure | |
44 | 1BF4|1|B+1BF4|1|C | CHROMOSOMAL DNA-BINDING PROTEIN SSO7D/D(GCGAACGC) COMPLEX | X-RAY DIFFRACTION | 1.6 | 8 | B-form double helix,double helix,structure | chromatin,nucleosome,structural |
45 | 1C8C|1|B+1C8C|1|C | CRYSTAL STRUCTURES OF THE CHROMOSOMAL PROTEINS SSO7D/SAC7D BOUND TO DNA CONTAINING T-G MISMATCHED BASE PAIRS | X-RAY DIFFRACTION | 1.45 | 8 | double helix,feature,mispair,structure | chromatin,nucleosome,structural |
46 | 1WTP|1|C+1WTP|1|D | Hyperthermophile chromosomal protein SAC7D single mutant M29F in complex with DNA GCGA(UBr)CGC | X-RAY DIFFRACTION | 1.9 | 8 | chromatin,nucleosome,structural | |
47 | 1AZP|1|B+1AZP|1|C | HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX | X-RAY DIFFRACTION | 1.6 | 8 | B-form double helix,double helix,structure | chromatin,nucleosome,structural |
48 | 1WTR|1|B+1WTR|1|C | Hyperthermophile chromosomal protein SAC7D single mutant M29A in complex with DNA GCGATCGC | X-RAY DIFFRACTION | 1.8 | 8 | B-form double helix,double helix,structure | chromatin,nucleosome,structural |
49 | 2DNJ|1|B+2DNJ|1|C | DNASE I-INDUCED DNA CONFORMATION. 2 ANGSTROMS STRUCTURE OF A DNASE I-OCTAMER COMPLEX | X-RAY DIFFRACTION | 2 | 8 | double helix,structure | enzyme,hydrolase,nuclease |
50 | 1WTV|1|B+1WTV|1|C | Hyperthermophile chromosomal protein SAC7D single mutant M29A in complex with DNA GTAATTAC | X-RAY DIFFRACTION | 1.6 | 8 | B-form double helix,double helix,structure | chromatin,nucleosome,structural |
51 | 1WTQ|1|B+1WTQ|1|C | Hyperthermophile chromosomal protein SAC7D single mutant M29F in complex with DNA GTAATTAC | X-RAY DIFFRACTION | 1.7 | 8 | B-form double helix,double helix,structure | chromatin,nucleosome,structural |
52 | 1BNZ|1|B+1BNZ|1|C | SSO7D HYPERTHERMOPHILE PROTEIN/DNA COMPLEX | X-RAY DIFFRACTION | 2 | 8 | B-form double helix,double helix,structure | chromatin,nucleosome,structural |
53 | 1AZQ|1|B+1AZQ|1|C | HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX | X-RAY DIFFRACTION | 1.94 | 8 | B-form double helix,double helix,structure | chromatin,nucleosome,structural |
54 | 3LWH|1|B+3LWH|1|C | Crystal structure of Cren7-dsDNA complex | X-RAY DIFFRACTION | 1.9 | 8 | B-form double helix,double helix,structure | chromatin,structural |
55 | 369D|1|A+369D|1|B | STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG) | X-RAY DIFFRACTION | 1.9 | 8 | A-form double helix,double helix,structure | |
56 | 371D|1|A+371D|1|B | STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG) | X-RAY DIFFRACTION | 1.9 | 8 | A-form double helix,double helix,structure | |
57 | 2PLO|1|A+2PLO|1|B | D-(GTATACC) low temperature (100K) | X-RAY DIFFRACTION | 1.4 | 8 | A-form double helix,double helix,structure | |
58 | 2PKV|1|A+2PKV|1|B | D-(GGTATACC) ambient pressure | X-RAY DIFFRACTION | 1.6 | 8 | A-form double helix,double helix,structure | |
59 | 115D|1|A+115D|1|B | ORDERED WATER STRUCTURE IN AN A-DNA OCTAMER AT 1.7 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 1.7 | 8 | A-form double helix,double helix,structure | |
60 | 1VJ4|1|A+1VJ4|1|B | SEQUENCE-DEPENDENT CONFORMATION OF AN A-DNA DOUBLE HELIX: THE CRYSTAL STRUCTURE OF THE OCTAMER D(G-G-T-A-T-A-C-C) | X-RAY DIFFRACTION | 1.8 | 8 | A-form double helix,double helix,structure | |
61 | 1D79|1|A | HIGH RESOLUTION REFINEMENT OF THE HEXAGONAL A-DNA OCTAMER D(GTGTACAC) AT 1.4 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 1.45 | 8 | A-form double helix,double helix,structure | |
62 | 2D94|1|A | THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT | X-RAY DIFFRACTION | 1.7 | 8 | A-form double helix,double helix,structure | |
63 | 1WTP|1|E+1WTP|1|F | Hyperthermophile chromosomal protein SAC7D single mutant M29F in complex with DNA GCGA(UBr)CGC | X-RAY DIFFRACTION | 1.9 | 8 | chromatin,nucleosome,structural | |
64 | 1WTO|1|B+1WTO|1|C | Hyperthermophile chromosomal protein SAC7D double mutant V26F/M29F in complex with DNA GCGATCGC | X-RAY DIFFRACTION | 1.5 | 8 | B-form double helix,double helix,structure | chromatin,nucleosome,structural |
65 | 159D|1|A | SIDE BY SIDE BINDING OF TWO DISTAMYCIN A DRUGS IN THE MINOR GROOVE OF AN ALTERNATING B-DNA DUPLEX | X-RAY DIFFRACTION | 1.8 | 8 | B-form double helix,double helix,structure | |
66 | 2W42|1|P+2W42|1|Q | THE STRUCTURE OF A PIWI PROTEIN FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH A 16NT DNA DUPLEX. | X-RAY DIFFRACTION | 1.9 | 8 | B-form double helix,double helix,structure | gene silencing,regulatory |
67 | 2W42|1|R+2W42|1|S | THE STRUCTURE OF A PIWI PROTEIN FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH A 16NT DNA DUPLEX. | X-RAY DIFFRACTION | 1.9 | 8 | B-form double helix,double helix,structure | gene silencing,regulatory |
68 | 2R2T|1|B+2R2T|1|G | d(ATTTAGTTAACTAAAT) complexed with MMLV RT catalytic fragment | X-RAY DIFFRACTION | 2 | 8 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
69 | 1DNS|1|A | BASE ONLY BINDING OF SPERMINE IN THE DEEP GROOVE OF THE A-DNA OCTAMER D(GTGTACAC) | X-RAY DIFFRACTION | 2 | 8 | A-form double helix,double helix,structure | |
70 | 3FSI|1|B+3FSI|1|G | Crystal structure of a trypanocidal 4,4'-Bis(imidazolinylamino)diphenylamine bound to DNA | X-RAY DIFFRACTION | 1.75 | 8 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
71 | 1ZTT|1|B+1ZTT|1|G | Netropsin bound to d(CTTAATTCGAATTAAG) in complex with MMLV RT catalytic fragment | X-RAY DIFFRACTION | 1.85 | 8 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
72 | 304D|1|A | SIDE-BY-SIDE BINDING OF DISTAMYCIN MOLECULES TO D(ICATATIC) IN THE MONOCLINIC FORM | X-RAY DIFFRACTION | 1.9 | 8 | B-form double helix,double helix,structure | |
73 | 3C2J|1|A+3C2J|1|B | Crystal structure analysis of trioxacarcin A covalently bound to d(AACCGGTT) | X-RAY DIFFRACTION | 1.78 | 8 | B-form double helix,double helix,structure | |
74 | 295D|1|A | CRYSTAL AND SOLUTION STRUCTURES OF THE OLIGONUCLEOTIDE D(ATGCGCAT)2: A COMBINED X-RAY AND NMR STUDY | X-RAY DIFFRACTION | 1.5 | 8 | A-form double helix,double helix,structure | |
75 | 368D|1|A+368D|1|B | STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG) | X-RAY DIFFRACTION | 1.6 | 8 | double helix,structure | |
76 | 243D|1|A | STRUCTURE OF THE DNA OCTANUCLEOTIDE D(ACGTACGT)2 | X-RAY DIFFRACTION | 1.9 | 8 | A-form double helix,double helix,structure | |
77 | 344D|1|A | DETERMINATION BY MAD-DM OF THE STRUCTURE OF THE DNA DUPLEX D(ACGTACG(5-BRU))2 AT 1.46A AND 100K | X-RAY DIFFRACTION | 1.46 | 8 | A-form double helix,double helix,structure | |
78 | 337D|1|A | STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA | X-RAY DIFFRACTION | 1.85 | 8 | A-form double helix,double helix,structure | |
79 | 9DNA|1|A | CRYSTAL STRUCTURE ANALYSIS OF AN A-DNA FRAGMENT AT 1.8 ANGSTROMS RESOLUTION. D(GCCCGGGC) | X-RAY DIFFRACTION | 1.8 | 8 | A-form double helix,double helix,structure | |
80 | 306D|1|A | SIDE-BY-SIDE BINDING OF DISTAMYCIN MOLECULES TO D(ICITACIC) | X-RAY DIFFRACTION | 1.6 | 8 | B-form double helix,double helix,structure | |
81 | 1JUX|1|A | 1.6A Resolution Crystal Structures of the DNA Octamers d(IUATATAC) and d(ITITACAC):Binding of Two Distamycin Drugs Side-by-Side | X-RAY DIFFRACTION | 1.6 | 8 | B-form double helix,double helix,structure | |
82 | 454D|1|G+454D|1|H | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-RAY DIFFRACTION | 1.2 | 8 | B-form double helix,double helix,structure | |
83 | 454D|1|E+454D|1|F | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-RAY DIFFRACTION | 1.2 | 8 | B-form double helix,double helix,structure | |
84 | 454D|1|A+454D|1|B | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-RAY DIFFRACTION | 1.2 | 8 | B-form double helix,double helix,structure | |
85 | 454D|1|C+454D|1|D | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-RAY DIFFRACTION | 1.2 | 8 | B-form double helix,double helix,structure | |
86 | 454D|1|I+454D|1|J | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | X-RAY DIFFRACTION | 1.2 | 8 | B-form double helix,double helix,structure | |
87 | 1UHY|1|A | Crystal structure of d(GCGATAGC): the base-intercalated duplex | X-RAY DIFFRACTION | 1.7 | 8 | NAKB_NA_annotation | NAKB_protein_annotation |
88 | 284D|1|A+284D|1|B | THE BI-LOOP, A NEW GENERAL FOUR-STRANDED DNA MOTIF | X-RAY DIFFRACTION | 1.1 | 8 | cyclic,feature,structure | |
89 | 1PFE|1|A | Echinomycin-(gcgtacgc)2 complex | X-RAY DIFFRACTION | 1.1 | 8 | bis-intercalating,double helix,ligand,structure | |
90 | 1XYI|1|B+1XYI|1|C | Hyperthermophile chromosomal protein Sac7d double mutant Val26Ala/Met29Ala in complex with DNA GCGATCGC | X-RAY DIFFRACTION | 1.45 | 8 | B-form double helix,double helix,structure | chromatin,nucleosome,structural |
91 | 3KXT|1|B+3KXT|1|C | Crystal structure of Sulfolobus Cren7-dsDNA complex | X-RAY DIFFRACTION | 1.602 | 8 | B-form double helix,double helix,structure | chromatin,structural |
92 | 3FA1|1|A | Crystal Structure of Tellurium Derivatized DNA | X-RAY DIFFRACTION | 1.5 | 8 | A-form double helix,double helix,structure | |
93 | 3K18|1|A | Tellurium modified DNA-8mer | X-RAY DIFFRACTION | 1.5 | 8 | A-form double helix,double helix,structure | |
94 | 3IKI|1|A | 5-SMe-dU containing DNA octamer | X-RAY DIFFRACTION | 1.38 | 8 | A-form double helix,double helix,structure | |
95 | 3IJK|1|A | 5-OMe modified DNA 8mer | X-RAY DIFFRACTION | 1.3 | 8 | A-form double helix,double helix,structure | |
96 | 3IJN|1|A | 5-SeMe-Cytidine modified DNA 8mer | X-RAY DIFFRACTION | 1.8 | 8 | A-form double helix,double helix,structure | |
97 | 3IFI|1|A | 2'-SeMe-dG modified octamer DNA | X-RAY DIFFRACTION | 1.2 | 8 | double helix,structure | |
98 | 3LTR|1|A | 5-OMe-dU containing DNA 8mer | X-RAY DIFFRACTION | 1.3 | 8 | A-form double helix,double helix,structure | |
99 | 3LTU|1|A | 5-SeMe-dU containing DNA 8mer | X-RAY DIFFRACTION | 1.4 | 8 | A-form double helix,double helix,structure | |
100 | 2H0N|1|A | Structure of the fully modified left-handed cyclohexene nucleic acid sequence GTGTACAC | X-RAY DIFFRACTION | 1.53 | 8 | double helix,structure | |
101 | 3MBS|1|A | Crystal structure of 8mer PNA | X-RAY DIFFRACTION | 1.27 | 72 | NAKB_NA_annotation | NAKB_protein_annotation |
102 | 2DZ7|1|A | DNA Octaplex Formation with an I-Motif of A-Quartets: The Revised Crystal Structure of d(GCGAAAGC) | X-RAY DIFFRACTION | 1.6 | 8 | I-motif,parallel helix,quadruplex,structure | |
103 | 481D|1|A | CRYSTAL STRUCTURE OF A HEXITOL NUCLEIC ACID (HNA) DUPLEX AT 1.6A RESOLUTION | X-RAY DIFFRACTION | 1.6 | 8 | A-form double helix,double helix,structure | |
104 | 3MBS|1|B | Crystal structure of 8mer PNA | X-RAY DIFFRACTION | 1.27 | 77 | NAKB_NA_annotation | NAKB_protein_annotation |
105 | 3MBS|1|D | Crystal structure of 8mer PNA | X-RAY DIFFRACTION | 1.27 | 69 | NAKB_NA_annotation | NAKB_protein_annotation |
106 | 3MBS|1|C | Crystal structure of 8mer PNA | X-RAY DIFFRACTION | 1.27 | 69 | NAKB_NA_annotation | NAKB_protein_annotation |
107 | 2H0N|1|B | Structure of the fully modified left-handed cyclohexene nucleic acid sequence GTGTACAC | X-RAY DIFFRACTION | 1.53 | 8 | double helix,structure | |
108 | 2H9S|1|A | Crystal Structure of Homo-DNA and Nature's Choice of Pentose over Hexose in the Genetic System | X-RAY DIFFRACTION | 1.75 | 8 | NAKB_NA_annotation | NAKB_protein_annotation |
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