Equivalence class DNA_2.0_82827.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3JXB|1|A+ 3JXB|1|B (rep) | 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*A)-3', 5'-D(*TP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3' | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C | X-ray diffraction | 1.67 | 2010-01-19 | ||||
| 2 | 2R1J|1|A+ 2R1J|1|B | 5'-D(*DTP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DG)-3', 5'-D(*DCP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DA)-3' | Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9T | X-ray diffraction | 1.53 | 2008-04-29 | ||||
| 3 | 3JXC|1|A+ 3JXC|1|B | 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3' | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+ | X-ray diffraction | 1.9 | 2010-01-19 | ||||
| 4 | 2HAN|1|C+ 2HAN|1|D | 5'-D(*CP*AP*AP*GP*GP*GP*TP*TP*CP*AP*AP*TP*GP*CP*AP*CP*TP*TP*GP*T)-3', 5'-D(*GP*AP*CP*AP*AP*GP*TP*GP*CP*AP*TP*TP*GP*AP*AP*CP*CP*CP*TP*T)-3' | Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoter | X-ray diffraction | 1.95 | 2007-05-22 | ||||
| 5 | 1PUF|1|D+ 1PUF|1|E | 5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*AP*CP*GP*CP*T)-3', 5'-D(*TP*AP*GP*CP*GP*TP*CP*GP*TP*AP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3' | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA | X-ray diffraction | 1.9 | 2003-09-02 | ||||
| 6 | 1L3L|1|E+ 1L3L|1|G | 5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3' | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-ray diffraction | 1.66 | 2002-07-03 | ||||
| 7 | 1L3L|1|F+ 1L3L|1|H | 5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3' | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-ray diffraction | 1.66 | 2002-07-03 | ||||
| 8 | 1LMB|1|1+ 1LMB|1|2 | DNA (5'-D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3') | REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEX | X-ray diffraction | 1.8 | 1991-11-05 |
Release history
| Release | 0.21 |
|---|---|
| Date | 2011-06-11 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1L3L|1|F+1L3L|1|H | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-RAY DIFFRACTION | 1.66 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 2 | 1L3L|1|E+1L3L|1|G | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-RAY DIFFRACTION | 1.66 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 3 | 3JXB|1|A+3JXB|1|B | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C | X-RAY DIFFRACTION | 1.67 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 4 | 2R1J|1|A+2R1J|1|B | Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9T | X-RAY DIFFRACTION | 1.53 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 5 | 3JXC|1|A+3JXC|1|B | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+ | X-RAY DIFFRACTION | 1.9 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 6 | 2HAN|1|C+2HAN|1|D | Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoter | X-RAY DIFFRACTION | 1.95 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 7 | 1LMB|1|1+1LMB|1|2 | REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEX | X-RAY DIFFRACTION | 1.8 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription |
| 8 | 1PUF|1|D+1PUF|1|E | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA | X-RAY DIFFRACTION | 1.9 | 20 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
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