Equivalence class DNA_2.0_57772.2 Current
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 3OMJ|1|A+ 3OMJ|1|B (rep) | 5'-D(*CP*(C38)P*AP*GP*TP*AP*CP*TP*GP*G)-3' | Structural Basis for Cyclic Py-Im Polyamide Allosteric Inhibition of Nuclear Receptor Binding | X-ray diffraction | 0.95 | 2010-09-08 | ||||
2 | 1KGK|1|A+ 1KGK|1|B | 5'-D(*GP*(GCK)P*GP*TP*AP*TP*AP*CP*GP*C)-3' | Direct Observation of a Cytosine Analog that Forms Five Hydrogen Bonds to Guanosine; Guanyl G-Clamp | X-ray diffraction | 1 | 2001-12-21 | ||||
3 | 1DPL|1|A+ 1DPL|1|B | 5'-D(*GP*CP*GP*TP*AP*(T23)P*AP*CP*GP*C)-3' | A-DNA DECAMER GCGTA(T23)TACGC WITH INCORPORATED 2'-METHOXY-3'-METHYLENEPHOSPHATE-THYMIDINE | X-ray diffraction | 0.83 | 2000-04-04 | ||||
4 | 3I5E|1|A | 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G)-3' | Allosteric Modulation of DNA by Small Molecules | X-ray diffraction | 0.98 | 2009-07-28 | ||||
5 | 1EN8|1|A | DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3') | 1 A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM | X-ray diffraction | 0.985 | 2000-09-25 | ||||
6 | 1ENE|1|A | DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3') | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. | X-ray diffraction | 0.985 | 2000-09-25 | ||||
7 | 3I5L|1|A+ 3I5L|1|B | 5'-D(*CP*CP*AP*GP*GP*(C38)P*CP*TP*GP*G)-3' | Allosteric Modulation of DNA by Small Molecules | X-ray diffraction | 1.18 | 2009-07-28 | ||||
8 | 3EY2|1|A+ 3EY2|1|B | 5'-D(*GP*CP*GP*TP*AP*(USM)P*AP*CP*GP*C)-3' | A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution | X-ray diffraction | 1.04 | 2009-04-28 | ||||
9 | 1EN9|1|A | DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3') | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. | X-ray diffraction | 0.985 | 2000-09-25 | ||||
10 | 1EN3|1|A | DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3') | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM | X-ray diffraction | 0.985 | 2000-09-25 | ||||
11 | 1MLX|1|A+ 1MLX|1|B | 5'-D(*GP*CP*GP*TP*AP*SMTP*AP*CP*GP*C)-3' | Crystal Structure Analysis of a 2'-O-[2-(Methylthio)-ethyl]-Modified Oligodeoxynucleotide Duplex | X-ray diffraction | 1.25 | 2002-12-04 | ||||
12 | 3OZ5|1|A+ 3OZ5|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(UMX)P*AP*CP*GP*C)-3') | S-Methyl Carbocyclic LNA | X-ray diffraction | 1.36 | 2010-11-24 | ||||
13 | 2FIJ|1|A+ 2FIJ|1|B | 5'-D(*GP*CP*GP*TP*(A2M)P*(UAR)P*AP*CP*GP*C)-3' | Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-aU-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and Arabino-Uridine (aU) | X-ray diffraction | 1.19 | 2006-05-23 | ||||
14 | 1M77|1|A | 5'-D(*CP*CP*CP*GP*AP*TP*CP*GP*GP*G)-3' | Near Atomic Resolution Crystal Structure of an A-DNA Decamer d(CCCGATCGGG): Cobalt Hexammine Interactions with A-DNA | X-ray diffraction | 1.25 | 2003-01-07 | ||||
15 | 1PWF|1|A+ 1PWF|1|B | 5'-D(*GP*CP*GP*TP*AP*(2MU)P*(FA2)P*CP*GP*C)-3' | One Sugar Pucker Fits All: Pairing Versatility Despite Conformational Uniformity in TNA | X-ray diffraction | 1.16 | 2004-07-13 | ||||
16 | 1R3G|1|A+ 1R3G|1|B | 5'-D(*GP*CP*GP*TP*AP*(GMU)P*AP*CP*GP*C)-3') | 1.16A X-ray structure of the synthetic DNA fragment with the incorporated 2'-O-[(2-Guanidinium)ethyl]-5-methyluridine residues | X-ray diffraction | 1.16 | 2003-10-21 | ||||
17 | 1I5W|1|A+ 1I5W|1|B | 5'-D(*GP*CP*GP*TP*AP*(TLN)P*AP*CP*GP*C)-3' | A-DNA DECAMER GCGTA(TLN)ACGC | X-ray diffraction | 1.4 | 2001-04-04 | ||||
18 | 1Y84|1|A+ 1Y84|1|B | 5'-D(*GP*CP*GP*TP*AP*(EIT)P*AP*CP*GP*C)-3' | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(imidazolyl)ethyl] Thymidine (T*) | X-ray diffraction | 1.6 | 2005-06-28 | ||||
19 | 1Y9F|1|A+ 1Y9F|1|B | 5'-D(*GP*CP*GP*TP*AP*(2AT)P*AP*CP*GP*C)-3') | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-allyl Thymidine (T*) | X-ray diffraction | 1.6 | 2005-06-28 | ||||
20 | 1YB9|1|A+ 1YB9|1|B | 5'-D(*GP*CP*GP*TP*AP*(2OT)P*AP*CP*GP*C)-3') | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(N,N-dimethylaminooxy)ethyl] Thymidine (T*) | X-ray diffraction | 1.65 | 2005-06-28 | ||||
21 | 1Y7F|1|A+ 1Y7F|1|B | 5'-D(*GP*CP*GP*TP*AP*(2NT)P*AP*CP*GP*C)-3') | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-[hydroxy(methyleneamino)oxy]ethyl] Thymidine (T*) | X-ray diffraction | 1.6 | 2005-06-28 | ||||
22 | 1Y8L|1|A+ 1Y8L|1|B | 5'-D(*GP*CP*GP*TP*AP*(TFE)P*AP*CP*GP*C)-3') | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(trifluoro)ethyl] Thymidine (T*) | X-ray diffraction | 1.5 | 2005-06-28 | ||||
23 | 1Y86|1|A+ 1Y86|1|B | 5'-D(*GP*CP*GP*TP*AP*(125)P*AP*CP*GP*C)-3' | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(fluoro)ethyl] Thymidine (T*) | X-ray diffraction | 1.7 | 2005-06-28 | ||||
24 | 1Y9S|1|A+ 1Y9S|1|B | 5'-D(*GP*CP*GP*TP*AP*(2GT)P*AP*CP*GP*C)-3') | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-propargyl Thymidine (T*) | X-ray diffraction | 1.55 | 2005-06-28 | ||||
25 | 3OZ3|1|A+ 3OZ3|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(UVX)P*AP*CP*GP*C)-3') | Vinyl Carbocyclic LNA | X-ray diffraction | 1.57 | 2010-11-24 | ||||
26 | 3PA0|1|A | DNA 5'-D(*AP*TP*CP*TP*GP*TP*GP*GP*TP*C)-3' | synthetic construct | Crystal Structure of Chiral Gamma-PNA with Complementary DNA Strand: Insight Into the Stability and Specificity of Recognition an Conformational Preorganization | X-ray diffraction | 1.6 | 2010-12-29 | |||
27 | 3PA0|1|B | DNA 5'-D(*AP*TP*CP*TP*GP*TP*GP*GP*TP*C)-3' | synthetic construct | Crystal Structure of Chiral Gamma-PNA with Complementary DNA Strand: Insight Into the Stability and Specificity of Recognition an Conformational Preorganization | X-ray diffraction | 1.6 | 2010-12-29 | |||
28 | 1Y8V|1|A+ 1Y8V|1|B | 5'-D(*GP*CP*GP*TP*AP*(P2T)P*AP*CP*GP*C)-3' | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-propyl Thymidine (T*) | X-ray diffraction | 1.5 | 2005-06-28 | ||||
29 | 2FIL|1|A+ 2FIL|1|B | 5'-D(*GP*CP*GP*TP*(A2M)P*(TAF)P*AP*CP*GP*C)-3' | Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-faT-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and 2'-Fluoroarabino-Thymidine (faT) | X-ray diffraction | 1.69 | 2006-05-23 | ||||
30 | 2FIL|1|C+ 2FIL|1|D | 5'-D(*GP*CP*GP*TP*(A2M)P*(TAF)P*AP*CP*GP*C)-3' | Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-faT-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and 2'-Fluoroarabino-Thymidine (faT) | X-ray diffraction | 1.69 | 2006-05-23 | ||||
31 | 3JY1|1|B+ 3JY1|1|C | DNA (5'-D(*TP*GP*GP*GP*(3DR)P*GP*GP*CP*TP*T)-3'), DNA (5'-D(*AP*AP*AP*GP*CP*CP*CP*CP*CP*C)-3') | Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from C) | X-ray diffraction | 1.754 | 2010-09-22 | ||||
32 | 1I0J|1|A+ 1I0J|1|B | 5'-D(*GP*CP*GP*TP*AP*(T23)P*AP*CP*GP*C)-3' | 1.06 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE (T23) THYMINE IN PLACE OF T6, HIGH CS-SALT | X-ray diffraction | 1.06 | 2001-04-04 | ||||
33 | 1YBC|1|A+ 1YBC|1|B | 5'-D(*GP*CP*GP*TP*AP*(BOE)P*AP*CP*GP*C)-3') | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(benzyloxy)ethyl] Thymidine (T*) | X-ray diffraction | 1.8 | 2005-06-28 | ||||
34 | 2OKS|1|A | 5'-D(*CP*CP*AP*AP*(C34)P*GP*TP*TP*GP*G)-3' | X-ray Structure of a DNA Repair Substrate Containing an Alkyl Interstrand Crosslink at 1.65 Resolution | X-ray diffraction | 1.65 | 2007-02-13 | ||||
35 | 1NZG|1|A+ 1NZG|1|B | 5'-D(*GP*CP*GP*TP*AP*(3ME)P*AP*CP*GP*C)-3' | Crystal structure of A-DNA decamer GCGTA(3ME)ACGC, with a modified 5-methyluridine | X-ray diffraction | 1.6 | 2003-08-26 | ||||
36 | 1NR8|1|A | 5'-D(P*AP*GP*TP*GP*AP*TP*CP*TP*AP*C)-3' | The crystal structure of a D-Lysine-based chiral PNA-DNA duplex | X-ray diffraction | 1.66 | 2003-10-28 | ||||
37 | 3M7K|1|B+ 3M7K|1|C | DNA (5'-D(*GP*AP*GP*GP*CP*TP*TP*AP*AP*T)-3'), DNA (5'-D(P*TP*AP*AP*GP*CP*CP*TP*C)-3') | Crystal structure of PacI-DNA Enzyme product complex | X-ray diffraction | 1.92 | 2010-04-21 | ||||
38 | 3OZ4|1|A+ 3OZ4|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(URX)P*AP*CP*GP*C)-3') | R-Methyl Carbocyclic LNA | X-ray diffraction | 1.59 | 2010-11-24 | ||||
39 | 1IKK|1|A+ 1IKK|1|B | 5'-D(*CP*CP*TP*TP*TP*AP*AP*AP*GP*G)-3' | Intrinsic Bending and Deformability at the T-A step of CCTTTAAAGG: A Comparative Analysis of T-A and A-T steps within A-tracts | X-ray diffraction | 1.6 | 2001-10-05 | ||||
40 | 1ZF1|1|A+ 1ZF1|1|B | 5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3' | CCC A-DNA | X-ray diffraction | 1.35 | 2005-05-10 | ||||
41 | 2WIW|1|C+ 2WIW|1|D | 5'-D(*DC*DG*DG*DA*DT*DA*DT*DC*DC*DGP)-3' | synthetic construct | Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate | X-ray diffraction | 1.8 | 2009-05-26 | |||
42 | 1ZF3|1|A+ 1ZF3|1|B | 5'-D(*CP*CP*GP*AP*TP*AP*TP*CP*GP*G)-3' | ATC Four-stranded DNA Holliday Junction | X-ray diffraction | 1.84 | 2005-05-10 | ||||
43 | 1ZF9|1|A+ 1ZF9|1|B | 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3' | GGG Duplex A-DNA | X-ray diffraction | 1.38 | 2005-05-10 | ||||
44 | 1ZFG|1|A+ 1ZFG|1|B | 5'-D(*CP*CP*GP*AP*GP*CP*TP*CP*GP*G)-3' | CTC Duplex B-DNA | X-ray diffraction | 1.75 | 2005-05-10 | ||||
45 | 3HPO|1|C+ 3HPO|1|B | 5'-D(P*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3' | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus Y714S mutant bound to G:T mismatch | X-ray diffraction | 1.75 | 2010-06-23 | ||||
46 | 473D|1|A+ 473D|1|B | DNA (5'-D(*CP*GP*TP*AP*TP*AP*TP*AP*CP*G)-3') | NI2+/GUANINE INTERACTIONS AND NETROPSIN/GUANINE STACKING IN D(CGTATATACG)2 | X-ray diffraction | 1.58 | 1999-12-02 | ||||
47 | 1ZF7|1|A+ 1ZF7|1|B | 5'-D(*CP*CP*GP*TP*CP*GP*AP*CP*GP*G)-3' | GAC Duplex B-DNA | X-ray diffraction | 1.05 | 2005-05-10 | ||||
48 | 2BDP|1|T+ 2BDP|1|P | DNA (5'-D(P*AP*GP*CP*AP*TP*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*GP*C)-3') | CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA | X-ray diffraction | 1.8 | 1999-01-13 | ||||
49 | 1ZEX|1|A+ 1ZEX|1|B | 5'-D(*CP*CP*CP*GP*GP*CP*CP*GP*GP*G)-3' | CCG A-DNA | X-ray diffraction | 1.65 | 2005-05-10 | ||||
50 | 1ZF8|1|A+ 1ZF8|1|B | 5'-D(*CP*CP*AP*CP*CP*GP*GP*TP*GP*G)-3' | GGT Duplex A-DNA | X-ray diffraction | 1.48 | 2005-05-10 | ||||
51 | 1NVY|1|A+ 1NVY|1|B | d(TCGGTACCGA)4 | Strontium bound to the Holliday junction sequence d(TCGGTACCGA)4 | X-ray diffraction | 1.5 | 2003-02-25 | ||||
52 | 2VOA|1|C+ 2VOA|1|D | 5'-D(*GP*CP*GP*GP*TP*AP*GP*CP*CP*GP)-3', 5'-D(*CP*GP*GP*CP*TP*AP*CP*CP*GP*CP)-3' | synthetic construct | Structure of an AP Endonuclease from Archaeoglobus fulgidus | X-ray diffraction | 1.7 | 2008-12-09 | |||
53 | 1P54|1|A+ 1P54|1|B | 5'-D(*CP*CP*AP*GP*TP*AP*CP*(BRU)P*GP*G)-3' | Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions | X-ray diffraction | 1.9 | 2003-09-02 | ||||
54 | 2AXB|1|A+ 2AXB|1|B | 5'-D(*GP*CP*GP*TP*AP*(S2M)P*AP*CP*GP*C)-3') | Crystal Structure Analysis Of A 2-O-[2-(methoxy)ethyl]-2-thiothymidine Modified Oligodeoxynucleotide Duplex | X-ray diffraction | 1.61 | 2005-11-01 | ||||
55 | 3LDY|1|C+ 3LDY|1|B | DNA (5'-D(P*AP*TP*TP*AP*AP*GP*CP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*GP*CP*TP*TP*A)-3') | An extraordinary mechanism of DNA perturbation exhibited by the rare-cutting HNH restriction endonuclease PacI | X-ray diffraction | 1.97 | 2010-04-21 | ||||
56 | 2ORF|1|A+ 2ORF|1|B | DNA (5'-D(*CP*CP*GP*GP*TP*AP*(BRU)P*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3') | Directing Macromolecular Conformation Through Halogen Bonds | X-ray diffraction | 1.85 | 2007-03-27 | ||||
57 | 1ZF0|1|A+ 1ZF0|1|B | 5'-D(*CP*CP*GP*TP*TP*AP*AP*CP*GP*G)-3' | B-DNA | X-ray diffraction | 1.5 | 2005-05-10 | ||||
58 | 1P4Y|1|A+ 1P4Y|1|B | 5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3' | Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions | X-ray diffraction | 1.7 | 2003-09-02 | ||||
59 | 1ZF5|1|A | 5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3' | GCT duplex B-DNA | X-ray diffraction | 0.99 | 2005-05-10 | ||||
60 | 1SA3|1|C+ 1SA3|1|D | 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3' | An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site | X-ray diffraction | 1.95 | 2004-09-07 | ||||
61 | 1SA3|1|E+ 1SA3|1|F | 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3' | An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site | X-ray diffraction | 1.95 | 2004-09-07 | ||||
62 | 2B1B|1|A+ 2B1B|1|B | 5'-D(*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3' | 5'-D(*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3' Zif268 binding site | X-ray diffraction | 1.9 | 2005-09-27 | ||||
63 | 1WD0|1|B+ 1WD0|1|C | 5'-D(*CP*CP*TP*AP*TP*AP*TP*AP*GP*G)-3' | Crystal structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers | X-ray diffraction | 1.9 | 2004-08-03 | ||||
64 | 3BDP|1|P+ 3BDP|1|T | DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*GP*CP*2DT)-3'), DNA (5'-D(*AP*GP*CP*AP*TP*CP*AP*TP*GP*C)-3') | DNA POLYMERASE I/DNA COMPLEX | X-ray diffraction | 1.9 | 1999-01-13 | ||||
65 | 1S23|1|A | 5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3' | Crystal Structure Analysis of the B-DNA Decamer CGCAATTGCG | X-ray diffraction | 1.6 | 2004-04-06 | ||||
66 | 1NVN|1|A+ 1NVN|1|B | 5'-D(CpCpGpGpTpApCpCpGpG)-3' | Structural Characterisation of the Holliday junction formed by the sequence CCGGTACCGG at 1.8 A | X-ray diffraction | 1.8 | 2003-02-25 | ||||
67 | 1I6J|1|C+ 1I6J|1|B | 5'-D(*AP*CP*GP*GP*GP*AP*CP*GP*AP*C)-3', 5'-D(*GP*TP*CP*GP*TP*C)-3' | CRYSTAL STRUCTURE OF A PSEUDO-16-MER DNA WITH STACKED GUANINES AND TWO G-A MISPAIRS COMPLEXED WITH THE N-TERMINAL FRAGMENT OF MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE | X-ray diffraction | 2 | 2001-09-07 | ||||
68 | 1ZF4|1|A+ 1ZF4|1|B | 5'-D(*CP*CP*GP*AP*TP*AP*TP*CP*GP*G)-3' | ATC Four-stranded DNA Holliday Junction | X-ray diffraction | 1.65 | 2005-05-10 | ||||
69 | 1ZFB|1|A+ 1ZFB|1|B | 5'-D(*CP*CP*GP*CP*CP*GP*GP*CP*GP*G)-3' | GGC Duplex B-DNA | X-ray diffraction | 1.65 | 2005-05-10 | ||||
70 | 1L6B|1|A+ 1L6B|1|B | 5'-D(*CP*CP*GP*GP*TP*AP*CP*(5CM)P*GP*G)-3' | CRYSTAL STRUCTURE ANALYSIS OF THE ALL DNA HOLLIDAY JUNCTION STRUCTURE OF CCGGTACM5CGG | X-ray diffraction | 1.5 | 2002-08-07 | ||||
71 | 3IGT|1|A+ 3IGT|1|B+ 3IGT|1|C+ 3IGT|1|D | 5'-D(*CP*CP*GP*AP*GP*TP*CP*CP*TP*A)-3', 5'-D(*CP*TP*CP*AP*AP*CP*TP*CP*GP*G)-3', 5'-D(*TP*CP*GP*GP*CP*CP*TP*GP*AP*G)-3', 5'-D(*TP*AP*GP*GP*GP*GP*CP*CP*GP*A)-3' | A rare nucleotide base tautomer in the structure of an asymmetric DNA junction | X-ray diffraction | 1.9 | 2009-08-18 | ||||
72 | 3IFF|1|A+ 3IFF|1|B | DNA (5'-D(*GP*TP*AP*CP*GP*CP*GP*TP*(XUA)P*C)-3') | 2'-SeMe-A modified DNA decamer | X-ray diffraction | 1.75 | 2009-08-11 | ||||
73 | 1ZF2|1|A+ 1ZF2|1|B | 5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3' | Four-stranded DNA Holliday Junction (CCC) | X-ray diffraction | 1.95 | 2005-05-10 | ||||
74 | 1I0O|1|A+ 1I0O|1|B | 5'-D(*GP*CP*GP*TP*AP*(T23)P*AP*CP*GP*C)-3' | 1.6 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE THYMINE IN PLACE OF T6, HIGH K-SALT | X-ray diffraction | 2 | 2001-04-04 | ||||
75 | 1P4Z|1|A | 5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*G)-3' | Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions | X-ray diffraction | 2 | 2003-09-02 | ||||
76 | 1ZF6|1|A+ 1ZF6|1|B | 5'-D(*CP*CP*CP*CP*AP*TP*GP*GP*GP*G)-3' | TGG DUPLEX A-DNA | X-ray diffraction | 1.5 | 2005-05-10 | ||||
77 | 2ORH|1|A+ 2ORH|1|B | DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(DU)P*CP*GP*G)-3') | Directing Macromolecular Conformation Through Halogen Bonds | X-ray diffraction | 1.9 | 2007-03-27 | ||||
78 | 1S1K|1|A | 5'-D(*CP*CP*(1AP)P*GP*TP*AP*CP*TP*GP*G)-3' | INFLUENCE OF GROOVE INTERACTIONS ON DNA HOLLIDAY JUNCTION FORMATION | X-ray diffraction | 1.9 | 2004-08-31 | ||||
79 | 1ZFA|1|A+ 1ZFA|1|B | 5'-D(*CP*CP*TP*CP*CP*GP*GP*AP*GP*G)-3' | GGA Duplex A-DNA | X-ray diffraction | 1.56 | 2005-05-10 | ||||
80 | 1ZEZ|1|A+ 1ZEZ|1|B | 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3' | ACC Holliday Junction | X-ray diffraction | 2 | 2005-05-10 | ||||
81 | 2ORG|1|A+ 2ORG|1|B | DNA (5'-D(*CP*CP*GP*GP*TP*AP*(BRU)P*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3') | Directing Macromolecular Conformation Through Halogen Bonds | X-ray diffraction | 2 | 2007-03-27 | ||||
82 | 1ZFC|1|A+ 1ZFC|1|B | 5'-D(*CP*CP*GP*AP*TP*AP*TP*CP*GP*G)-3' | ATC Duplex B-DNA | X-ray diffraction | 2 | 2005-05-10 | ||||
83 | 1NT8|1|A+ 1NT8|1|B | 5'-d(CpCpGpGpTpApCpCpGpG)-3' | Structural Characterisation of the Holliday junction formed by the sequence CCGGTACCGG at 2.00 A | X-ray diffraction | 2 | 2003-02-11 | ||||
84 | 1L4J|1|A+ 1L4J|1|B+ 1L4J|1|C+ 1L4J|1|D | 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3' | Holliday Junction TCGGTACCGA with Na and Ca Binding Sites. | X-ray diffraction | 1.85 | 2003-03-04 | ||||
85 | 1M6G|1|A+ 1M6G|1|B | 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3' | Structural Characterisation of the Holliday Junction TCGGTACCGA | X-ray diffraction | 1.652 | 2003-05-06 | ||||
86 | 1ZEY|1|A+ 1ZEY|1|B | 5'-D(*CP*CP*CP*CP*GP*CP*GP*GP*GP*G)-3' | CGG A-DNA | X-ray diffraction | 1.7 | 2005-05-10 | ||||
87 | 3PBX|1|A+ 3PBX|1|B | DNA | Strontium bound to the sequence d(CCGGCGCCGG) | X-ray diffraction | 1.879 | 2011-02-02 | ||||
88 | 1NQS|1|A+ 1NQS|1|B | 5'-d(TpCpGpGpTpApCpCpGpA)-3' | Structural Characterisation of the Holliday Junction formed by the sequence d(TCGGTACCGA) at 1.97 A | X-ray diffraction | 1.97 | 2003-02-04 | ||||
89 | 1Z8V|1|A+ 1Z8V|1|B | (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3') | The Structure of d(GGCCAATTGG) Complexed with Netropsin | X-ray diffraction | 1.75 | 2006-03-14 | ||||
90 | 1ZFF|1|A | 5'-D(*CP*CP*GP*AP*AP*TP*TP*CP*GP*G)-3' | TTC Duplex B-DNA | X-ray diffraction | 0.94 | 2005-05-10 | ||||
91 | 3GGK|1|A | 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3' | Locating monovalent cations in one turn of G/C rich B-DNA | X-ray diffraction | 0.87 | 2010-03-09 | ||||
92 | 1SK5|1|A+ 1SK5|1|B | 5'-D(*CP*TP*TP*TP*TP*AP*AP*AP*AP*G)-3' | The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition | X-ray diffraction | 0.89 | 2005-06-21 | ||||
93 | 3GGI|1|A | 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3' | Locating monovalent cations in one turn of G/C rich B-DNA | X-ray diffraction | 0.98 | 2010-03-09 | ||||
94 | 440D|1|A+ 440D|1|B | DNA (5'-D(*AP*GP*GP*GP*GP*CP*CP*CP*CP*T)-3') | HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) | X-ray diffraction | 1.1 | 1999-01-15 | ||||
95 | 431D|1|A+ 431D|1|B | DNA (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3') | 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3' | X-ray diffraction | 1.15 | 1999-09-15 | ||||
96 | 1XUW|1|A+ 1XUW|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(NMT)P*AP*CP*GP*C)-3') | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-ray diffraction | 1.25 | 2004-12-14 | ||||
97 | 1XUX|1|A+ 1XUX|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(NMS)P*AP*CP*GP*C)-3') | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-ray diffraction | 1.3 | 2004-12-14 | ||||
98 | 1MA8|1|A+ 1MA8|1|B | 5'-D(*GP*CP*GP*TP*AP*UMSP*AP*CP*GP*C)-3' | A-DNA decamer GCGTA(UMS)ACGC with incorporated 2'-methylseleno-uridine | X-ray diffraction | 1.3 | 2002-12-11 | ||||
99 | 1D61|1|A | DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3') | THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: MONOCLINIC FORM | X-ray diffraction | 1.3 | 1993-04-15 | ||||
100 | 3DNB|1|A | DNA (5'-D(*CP*CP*AP*AP*GP*AP*TP*TP*GP*G)-3') | HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER | X-ray diffraction | 1.3 | 1989-01-09 | ||||
101 | 1XUX|1|C+ 1XUX|1|D | DNA (5'-D(*GP*CP*GP*TP*AP*(NMS)P*AP*CP*GP*C)-3') | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-ray diffraction | 1.3 | 2004-12-14 | ||||
102 | 5DNB|1|A | DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3') | STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-G-T-T-G-G AND COMPARISON WITH ISOMORPHOUS DECAMERS C-C-A-A-G-A-T-T-G-G AND C-C-A-G-G-C-C-T-G-G | X-ray diffraction | 1.4 | 1991-10-15 | ||||
103 | 1D49|1|A+ 1D49|1|B | DNA (5'-D(*CP*GP*AP*TP*TP*AP*AP*TP*CP*G)-3') | THE STRUCTURE OF A B-DNA DECAMER WITH A CENTRAL T-A STEP: C-G-A-T-T-A-A-T-C-G | X-ray diffraction | 1.5 | 1992-04-15 | ||||
104 | 1D23|1|A+ 1D23|1|B | DNA (5'-D(*CP*GP*AP*TP*CP*GP*AP*TP*CP*G)-3') | THE STRUCTURE OF B-HELICAL C-G-A-T-C-G-A-T-C-G AND COMPARISON WITH C-C-A-A-C-G-T-T-G-G. THE EFFECT OF BASE PAIR REVERSALS | X-ray diffraction | 1.5 | 1991-10-15 | ||||
105 | 1CW9|1|A+ 1CW9|1|B | 5'-D(*CP*CP*AP*GP*(G47)P*CP*CP*TP*GP*G)-3' | DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE | X-ray diffraction | 1.55 | 1999-10-14 | ||||
106 | 1CW9|1|C+ 1CW9|1|D | 5'-D(*CP*CP*AP*GP*(G47)P*CP*CP*TP*GP*G)-3' | DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE | X-ray diffraction | 1.55 | 1999-10-14 | ||||
107 | 183D|1|A | DNA (5'-D(*CP*CP*AP*(8OG)P*CP*GP*CP*TP*GP*G)-3') | X-RAY STRUCTURE OF A DNA DECAMER CONTAINING 7, 8-DIHYDRO-8-OXOGUANINE | X-ray diffraction | 1.6 | 1995-02-27 | ||||
108 | 213D|1|A+ 213D|1|B | DNA (5'-D(*CP*CP*IP*GP*GP*CP*CP*(5CM)P*GP*G)-3') | CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCIGGCCM5CGG) AT 1.6 ANGSTROMS SHOWING THE UNEXPECTED WOBBLE I.M5C BASE PAIR | X-ray diffraction | 1.6 | 1996-01-31 | ||||
109 | 1DNZ|1|A | DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') | A-DNA DECAMER ACCGGCCGGT WITH MAGNESIUM BINDING SITES | X-ray diffraction | 1.6 | 2000-04-10 | ||||
110 | 410D|1|A+ 410D|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(T38)P*AP*CP*GP*C)-3') | DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-ETHOXYMETHYLENE RIBONUCLEOSIDE | X-ray diffraction | 1.6 | 1998-07-17 | ||||
111 | 1BD1|1|A | DNA (5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G)-3') | CRYSTALLOGRAPHIC STUDY OF ONE TURN OF G/C-RICH B-DNA | X-ray diffraction | 1.6 | 1990-01-15 | ||||
112 | 160D|1|A+ 160D|1|B | DNA (5'-D(*CP*CP*CP*GP*GP*CP*CP*GP*GP*G)-3') | HIGH RESOLUTION CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCCGGCCGGG): NOVEL INTERMOLECULAR BASE-PAIRED G*(G.C) TRIPLETS | X-ray diffraction | 1.65 | 1994-05-18 | ||||
113 | 123D|1|A+ 123D|1|B | DNA (5'-D(*CP*CP*AP*GP*GP*CP*(5CM)P*TP*GP*G)-3') | DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR | X-ray diffraction | 1.7 | 1993-10-15 | ||||
114 | 137D|1|A+ 137D|1|B | DNA (5'-D(*GP*CP*GP*GP*GP*CP*CP*CP*GP*C)-3') | A-DNA DECAMER D(GCGGGCCCGC)-ORTHORHOMBIC CRYSTAL FORM | X-ray diffraction | 1.7 | 1994-01-15 | ||||
115 | 122D|1|A+ 122D|1|B | DNA (5'-D(*CP*CP*AP*GP*GP*CP*(5CM)P*TP*GP*G)-3') | DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR | X-ray diffraction | 1.7 | 1993-10-15 | ||||
116 | 383D|1|A+ 383D|1|B | DNA (5'-D(*CP*(5CM)P*GP*CP*(5CM)P*GP*GP*(5CM)P*GP*G)-3') | Hydration and recognition of methylated CPG steps in DNA | X-ray diffraction | 1.7 | 1998-04-08 | ||||
117 | 348D|1|A | DNA (5'-D(*GP*AP*CP*CP*GP*CP*GP*GP*TP*C)-3') | X-RAY CRYSTAL STRUCTURES OF THE DECAMER DGACCGCGGTC: LOW SALT CONCENTRATION | X-ray diffraction | 1.7 | 1997-10-09 | ||||
118 | 196D|1|A+ 196D|1|B | DNA (5'-D(*CP*TP*CP*TP*CP*GP*AP*GP*AP*G)-3') | CRYSTAL STRUCTURE OF C-T-C-T-C-G-A-G-A-G: IMPLICATIONS FOR THE STRUCTURE OF THE HOLLIDAY JUNCTION | X-ray diffraction | 1.7 | 1995-02-27 | ||||
119 | 1D56|1|A+ 1D56|1|B | DNA (5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*CP*G)-3') | ALTERNATIVE STRUCTURES FOR ALTERNATING POLY(DA-DT) TRACTS: THE STRUCTURE OF THE B-DNA DECAMER C-G-A-T-A-T-A-T-C-G | X-ray diffraction | 1.7 | 1992-09-15 | ||||
120 | 1D02|1|C+ 1D02|1|D | DNA (5'-D(*GP*CP*CP*AP*AP*TP*TP*GP*GP*C)-3') | CRYSTAL STRUCTURE OF MUNI RESTRICTION ENDONUCLEASE IN COMPLEX WITH COGNATE DNA | X-ray diffraction | 1.7 | 2000-03-08 | ||||
121 | 3KDE|1|A+ 3KDE|1|B | 5'-D(*GP*TP*TP*AP*AP*GP*(BRU)P*GP*GP*A)-3', 5'-D(*(BRU)P*CP*CP*AP*CP*TP*TP*AP*AP*C)-3' | Crystal structure of the THAP domain from D. melanogaster P-element transposase in complex with its natural DNA binding site | X-ray diffraction | 1.74 | 2009-12-08 | ||||
122 | 2D25|1|A+ 2D25|1|B | DNA (5'-D(*CP*CP*AP*GP*GP*CP*(5CM)P*TP*GP*G)-3') | C-C-A-G-G-C-M5C-T-G-G; HELICAL FINE STRUCTURE, HYDRATION, AND COMPARISON WITH C-C-A-G-G-C-C-T-G-G | X-ray diffraction | 1.75 | 1991-04-23 | ||||
123 | 2GWA|1|A+ 2GWA|1|B | 5'-D(*Tp*Cp*Gp*Gp*Tp*Ap*Cp*Cp*Gp*A)-3' | Crystal Structure of a Complex Formed Between the DNA Holliday Junction and a Bis-Acridine Molecule. | X-ray diffraction | 1.75 | 2006-06-06 | ||||
124 | 3JXZ|1|B+ 3JXZ|1|C | DNA (5'-D(*TP*GP*GP*GP*(3DR)P*GP*GP*CP*TP*T)-3'), DNA (5'-D(*AP*AP*AP*GP*CP*CP*TP*CP*CP*C)-3') | Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T) | X-ray diffraction | 1.75 | 2010-09-22 | ||||
125 | 138D|1|A | DNA (5'-D(*GP*CP*GP*GP*GP*CP*CP*CP*GP*C)-3') | A-DNA DECAMER D(GCGGGCCCGC)-HEXAGONAL CRYSTAL FORM | X-ray diffraction | 1.8 | 1994-01-15 | ||||
126 | 396D|1|A | DNA (5'-D(*GP*GP*CP*CP*GP*CP*GP*GP*CP*C)-3') | synthetic construct | CRYSTAL STRUCTURES OF TWO ISOMOPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC) | X-ray diffraction | 1.8 | 1998-05-01 | |||
127 | 334D|1|A+ 334D|1|B | DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3') | DEFINING GC-SPECIFICITY IN THE MINOR GROOVE: SIDE-BY-SIDE BINDING OF THE DI-IMIDAZOLE LEXITROPSIN TO C-A-T-G-G-C-C-A-T-G | X-ray diffraction | 1.8 | 1997-08-29 | ||||
128 | 307D|1|A+ 307D|1|B | DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3') | Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis | X-ray diffraction | 1.85 | 1997-01-27 | ||||
129 | 1JTL|1|A+ 1JTL|1|B | 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3' | The crystal structure of d(GGCCAATTGG) Complexed with Distamycin | X-ray diffraction | 1.85 | 2002-08-09 | ||||
130 | 307D|1|C+ 307D|1|D | DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3') | Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis | X-ray diffraction | 1.85 | 1997-01-27 | ||||
131 | 307D|1|E+ 307D|1|F | DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3') | Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis | X-ray diffraction | 1.85 | 1997-01-27 | ||||
132 | 432D|1|A+ 432D|1|B | DNA (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3') | D(GGCCAATTGG) COMPLEXED WITH DAPI | X-ray diffraction | 1.89 | 1999-12-18 | ||||
133 | 212D|1|A | DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') | INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA | X-ray diffraction | 1.9 | 1996-01-31 | ||||
134 | 349D|1|A | DNA (5'-D(*GP*AP*CP*CP*GP*CP*GP*GP*TP*C)-3') | X-RAY CRYSTAL STRUCTURES OF THE DECAMER DGACCGCGGTC: HIGH SALT CONCENTRATION | X-ray diffraction | 1.9 | 1997-10-09 | ||||
135 | 414D|1|A+ 414D|1|B | DNA (5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3') | 5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3' | X-ray diffraction | 1.9 | 1999-06-14 | ||||
136 | 221D|1|A+ 221D|1|B | DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') | INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA | X-ray diffraction | 1.9 | 1996-01-31 | ||||
137 | 395D|1|A | DNA (5'-D(*GP*TP*AP*CP*GP*CP*GP*TP*AP*C)-3') | CRYSTAL STRUCTURES OF TWO ISOMORPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC) | X-ray diffraction | 1.9 | 1998-05-01 | ||||
138 | 158D|1|A+ 158D|1|B | DNA (5'-D(*CP*CP*AP*AP*GP*CP*TP*TP*GP*G)-3') | CRYSTALLOGRAPHIC ANALYSIS OF C-C-A-A-G-C-T-T-G-G AND ITS IMPLICATIONS FOR BENDING IN B-DNA | X-ray diffraction | 1.9 | 1994-05-31 | ||||
139 | 260D|1|A | DNA (5'-D(*GP*CP*AP*CP*GP*CP*GP*TP*GP*C)-3') | CRYSTAL STRUCTURE OF THE SELF-COMPLEMENTARY 5'-PURINE START DECAMER D(GCACGCGTGC) IN THE A-DNA CONFORMATION-PART II | X-ray diffraction | 1.9 | 1996-06-27 | ||||
140 | 414D|1|C+ 414D|1|D | DNA (5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3') | 5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3' | X-ray diffraction | 1.9 | 1999-06-14 | ||||
141 | 411D|1|A+ 411D|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(T39)P*AP*CP*GP*C)-3') | DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-METHOXYETHYL RIBONUCLEOSIDE | X-ray diffraction | 1.93 | 1998-07-17 | ||||
142 | 1BC8|1|A+ 1BC8|1|B | DNA (5'-D(*TP*AP*CP*CP*GP*GP*AP*AP*GP*T)-3'), DNA (5'-D(*AP*AP*CP*TP*TP*CP*CP*GP*GP*T)-3') | STRUCTURES OF SAP-1 BOUND TO DNA SEQUENCES FROM THE E74 AND C-FOS PROMOTERS PROVIDE INSIGHTS INTO HOW ETS PROTEINS DISCRIMINATE BETWEEN RELATED DNA TARGETS | X-ray diffraction | 1.93 | 1998-12-01 | ||||
143 | 327D|1|A | DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*CP*GP*CP*GP*C)-3') | CRYSTAL STRUCTURES OF D(GM5CGM5CGCGCGC) | X-ray diffraction | 1.94 | 1997-05-22 | ||||
144 | 1D57|1|A+ 1D57|1|B | DNA (5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*CP*G)-3') | ALTERNATIVE STRUCTURES FOR ALTERNATING POLY(DA-DT) TRACTS: THE STRUCTURE OF THE B-DNA DECAMER C-G-A-T-A-T-A-T-C-G | X-ray diffraction | 2 | 1992-09-15 | ||||
145 | 318D|1|A+ 318D|1|B | DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(CBR)P*GP*G)-3') | CRYSTAL STRUCTURES OF D(CCGGGCC(BR)5CGG)-HEXAGONAL FORM | X-ray diffraction | 2 | 1997-05-22 | ||||
146 | 1WQY|1|A+ 1WQY|1|B | 5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3' | X-RAY structural analysis of B-DNA decamer D(CCATTAATGG)2 crystal grown in D2O solution | X-ray diffraction | 2 | 2005-06-21 | ||||
147 | 220D|1|A | DNA (5'-D(*AP*CP*CP*CP*GP*CP*GP*GP*GP*T)-3') | INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA | X-ray diffraction | 2 | 1996-01-31 | ||||
148 | 1D13|1|A | DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') | MOLECULAR STRUCTURE OF AN A-DNA DECAMER D(ACCGGCCGGT) | X-ray diffraction | 2 | 1990-10-15 | ||||
149 | 126D|1|A+ 126D|1|B | DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3') | CRYSTAL STRUCTURE OF CATGGCCATG AND ITS IMPLICATIONS FOR A-TRACT BENDING MODELS | X-ray diffraction | 2 | 1993-10-15 | ||||
150 | 1SM5|1|A+ 1SM5|1|B | 5'-D(*GP*CP*(BRU)P*TP*AP*AP*TP*(BRU)P*CP*G)-3', 5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3' | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-ray diffraction | 2 | 2004-05-25 | ||||
151 | 365D|1|A+ 365D|1|B | DNA (5'-D(*CP*CP*AP*GP*GP*(CBR)P*CP*TP*GP*G)-3') | STRUCTURAL BASIS FOR G C RECOGNITION IN THE DNA MINOR GROOVE | X-ray diffraction | 2 | 1998-02-05 | ||||
152 | 1DA3|1|A+ 1DA3|1|B | DNA (5'-D(*CP*GP*AP*TP*CP*GP*(6MA)P*TP*CP*G)-3') | THE CRYSTAL STRUCTURE OF THE TRIGONAL DECAMER C-G-A-T-C-G-6MEA-T-C-G: A B-DNA HELIX WITH 10.6 BASE-PAIRS PER TURN | X-ray diffraction | 2 | 1993-04-15 | ||||
153 | 240D|1|A+ 240D|1|B | DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3') | EFFECT OF END BASE STEPS ON DNA FORM: CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCGGGCCCGG) | X-ray diffraction | 2 | 1996-06-20 | ||||
154 | 272D|1|A+ 272D|1|B | DNA (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3') | PARALLEL AND ANTIPARALLEL (G.GC)2 TRIPLE HELIX FRAGMENTS IN A CRYSTAL STRUCTURE | X-ray diffraction | 2 | 1996-09-20 | ||||
155 | 1D62|1|A | 5'-D(*CP*CP*AP*AP*IP*AP*TP*TP*GP*G)-3' | THE STRUCTURE OF A /B-DNA$ DECAMER WITH AN I(SLASH)*A MISMATCH AND COMPARISON WITH THE G(SLASH)*A MISMATCH | X-ray diffraction | 2 | 1993-07-15 | ||||
156 | 1SM5|1|C+ 1SM5|1|D | 5'-D(*GP*CP*(BRU)P*TP*AP*AP*TP*(BRU)P*CP*G)-3', 5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3' | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-ray diffraction | 2 | 2004-05-25 | ||||
157 | 1JGG|1|C+ 1JGG|1|D | 5'-D(P*TP*AP*AP*TP*TP*GP*AP*AP*TP*T)-3', 5'-D(P*AP*AP*TP*TP*CP*AP*AP*TP*TP*A)-3' | Even-skipped Homeodomain Complexed to AT-rich DNA | X-ray diffraction | 2 | 2001-07-06 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 3M7K|1|B+3M7K|1|C | Crystal structure of PacI-DNA Enzyme product complex | X-RAY DIFFRACTION | 1.92 | 10 | enzyme,hydrolase,nuclease | |
2 | 1Z8V|1|A+1Z8V|1|B | The Structure of d(GGCCAATTGG) Complexed with Netropsin | X-RAY DIFFRACTION | 1.75 | 10 | B-form double helix,double helix,structure | |
3 | 432D|1|A+432D|1|B | D(GGCCAATTGG) COMPLEXED WITH DAPI | X-RAY DIFFRACTION | 1.89 | 10 | B-form double helix,double helix,structure | |
4 | 1JTL|1|A+1JTL|1|B | The crystal structure of d(GGCCAATTGG) Complexed with Distamycin | X-RAY DIFFRACTION | 1.85 | 10 | B-form double helix,double helix,structure | |
5 | 272D|1|A+272D|1|B | PARALLEL AND ANTIPARALLEL (G.GC)2 TRIPLE HELIX FRAGMENTS IN A CRYSTAL STRUCTURE | X-RAY DIFFRACTION | 2 | 10 | structure,triple helix | |
6 | 431D|1|A+431D|1|B | 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3' | X-RAY DIFFRACTION | 1.15 | 10 | B-form double helix,double helix,structure | |
7 | 3JXZ|1|B+3JXZ|1|C | Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T) | X-RAY DIFFRACTION | 1.75 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase |
8 | 3JY1|1|B+3JY1|1|C | Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from C) | X-RAY DIFFRACTION | 1.754 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase |
9 | 396D|1|A | CRYSTAL STRUCTURES OF TWO ISOMOPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC) | X-RAY DIFFRACTION | 1.8 | 10 | A-form double helix,double helix,structure | |
10 | 348D|1|A | X-RAY CRYSTAL STRUCTURES OF THE DECAMER DGACCGCGGTC: LOW SALT CONCENTRATION | X-RAY DIFFRACTION | 1.7 | 10 | A-form double helix,double helix,structure | |
11 | 349D|1|A | X-RAY CRYSTAL STRUCTURES OF THE DECAMER DGACCGCGGTC: HIGH SALT CONCENTRATION | X-RAY DIFFRACTION | 1.9 | 10 | A-form double helix,double helix,structure | |
12 | 2B1B|1|A+2B1B|1|B | 5'-D(*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3' Zif268 binding site | X-RAY DIFFRACTION | 1.9 | 10 | A-form double helix,double helix,structure | |
13 | 3IFF|1|A+3IFF|1|B | 2'-SeMe-A modified DNA decamer | X-RAY DIFFRACTION | 1.75 | 10 | double helix,structure | |
14 | 260D|1|A | CRYSTAL STRUCTURE OF THE SELF-COMPLEMENTARY 5'-PURINE START DECAMER D(GCACGCGTGC) IN THE A-DNA CONFORMATION-PART II | X-RAY DIFFRACTION | 1.9 | 10 | A-form double helix,double helix,structure | |
15 | 395D|1|A | CRYSTAL STRUCTURES OF TWO ISOMORPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC) | X-RAY DIFFRACTION | 1.9 | 10 | A-form double helix,double helix,structure | |
16 | 1DNZ|1|A | A-DNA DECAMER ACCGGCCGGT WITH MAGNESIUM BINDING SITES | X-RAY DIFFRACTION | 1.6 | 10 | A-form double helix,double helix,structure | |
17 | 212D|1|A | INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA | X-RAY DIFFRACTION | 1.9 | 10 | A-form double helix,double helix,structure | |
18 | 1D13|1|A | MOLECULAR STRUCTURE OF AN A-DNA DECAMER D(ACCGGCCGGT) | X-RAY DIFFRACTION | 2 | 10 | A-form double helix,double helix,structure | |
19 | 138D|1|A | A-DNA DECAMER D(GCGGGCCCGC)-HEXAGONAL CRYSTAL FORM | X-RAY DIFFRACTION | 1.8 | 10 | A-form double helix,double helix,structure | |
20 | 327D|1|A | CRYSTAL STRUCTURES OF D(GM5CGM5CGCGCGC) | X-RAY DIFFRACTION | 1.94 | 10 | A-form double helix,double helix,structure | |
21 | 220D|1|A | INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA | X-RAY DIFFRACTION | 2 | 10 | A-form double helix,double helix,structure | |
22 | 1ZF1|1|A+1ZF1|1|B | CCC A-DNA | X-RAY DIFFRACTION | 1.35 | 10 | A-form double helix,double helix,structure | |
23 | 1ZF9|1|A+1ZF9|1|B | GGG Duplex A-DNA | X-RAY DIFFRACTION | 1.38 | 10 | A-form double helix,double helix,structure | |
24 | 2FIL|1|A+2FIL|1|B | Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-faT-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and 2'-Fluoroarabino-Thymidine (faT) | X-RAY DIFFRACTION | 1.69 | 10 | double helix,structure | |
25 | 2FIL|1|C+2FIL|1|D | Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-faT-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and 2'-Fluoroarabino-Thymidine (faT) | X-RAY DIFFRACTION | 1.69 | 10 | double helix,structure | |
26 | 2FIJ|1|A+2FIJ|1|B | Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-aU-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and Arabino-Uridine (aU) | X-RAY DIFFRACTION | 1.19 | 10 | double helix,structure | |
27 | 1XUX|1|A+1XUX|1|B | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-RAY DIFFRACTION | 1.3 | 10 | A-form double helix,double helix,structure | |
28 | 1ZF6|1|A+1ZF6|1|B | TGG DUPLEX A-DNA | X-RAY DIFFRACTION | 1.5 | 10 | A-form double helix,double helix,structure | |
29 | 1M77|1|A | Near Atomic Resolution Crystal Structure of an A-DNA Decamer d(CCCGATCGGG): Cobalt Hexammine Interactions with A-DNA | X-RAY DIFFRACTION | 1.25 | 10 | A-form double helix,double helix,structure | |
30 | 1ZEY|1|A+1ZEY|1|B | CGG A-DNA | X-RAY DIFFRACTION | 1.7 | 10 | double helix,structure | |
31 | 1XUX|1|C+1XUX|1|D | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-RAY DIFFRACTION | 1.3 | 10 | A-form double helix,double helix,structure | |
32 | 1PWF|1|A+1PWF|1|B | One Sugar Pucker Fits All: Pairing Versatility Despite Conformational Uniformity in TNA | X-RAY DIFFRACTION | 1.16 | 10 | double helix,structure | |
33 | 1Y8V|1|A+1Y8V|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-propyl Thymidine (T*) | X-RAY DIFFRACTION | 1.5 | 10 | A-form double helix,double helix,structure | |
34 | 411D|1|A+411D|1|B | DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-METHOXYETHYL RIBONUCLEOSIDE | X-RAY DIFFRACTION | 1.93 | 10 | A-form double helix,double helix,structure | |
35 | 1XUW|1|A+1XUW|1|B | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-RAY DIFFRACTION | 1.25 | 10 | A-form double helix,double helix,structure | |
36 | 1YBC|1|A+1YBC|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(benzyloxy)ethyl] Thymidine (T*) | X-RAY DIFFRACTION | 1.8 | 10 | A-form double helix,double helix,structure | |
37 | 2AXB|1|A+2AXB|1|B | Crystal Structure Analysis Of A 2-O-[2-(methoxy)ethyl]-2-thiothymidine Modified Oligodeoxynucleotide Duplex | X-RAY DIFFRACTION | 1.61 | 10 | A-form double helix,double helix,structure | |
38 | 1YB9|1|A+1YB9|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(N,N-dimethylaminooxy)ethyl] Thymidine (T*) | X-RAY DIFFRACTION | 1.65 | 10 | A-form double helix,double helix,structure | |
39 | 1I0O|1|A+1I0O|1|B | 1.6 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE THYMINE IN PLACE OF T6, HIGH K-SALT | X-RAY DIFFRACTION | 2 | 10 | A-form double helix,double helix,structure | |
40 | 1I0J|1|A+1I0J|1|B | 1.06 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE (T23) THYMINE IN PLACE OF T6, HIGH CS-SALT | X-RAY DIFFRACTION | 1.06 | 10 | A-form double helix,double helix,structure | |
41 | 1Y9F|1|A+1Y9F|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-allyl Thymidine (T*) | X-RAY DIFFRACTION | 1.6 | 10 | A-form double helix,double helix,structure | |
42 | 1Y9S|1|A+1Y9S|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-propargyl Thymidine (T*) | X-RAY DIFFRACTION | 1.55 | 10 | A-form double helix,double helix,structure | |
43 | 1Y8L|1|A+1Y8L|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(trifluoro)ethyl] Thymidine (T*) | X-RAY DIFFRACTION | 1.5 | 10 | A-form double helix,double helix,structure | |
44 | 1Y7F|1|A+1Y7F|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-[hydroxy(methyleneamino)oxy]ethyl] Thymidine (T*) | X-RAY DIFFRACTION | 1.6 | 10 | A-form double helix,double helix,structure | |
45 | 1Y86|1|A+1Y86|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(fluoro)ethyl] Thymidine (T*) | X-RAY DIFFRACTION | 1.7 | 10 | A-form double helix,double helix,structure | |
46 | 1NZG|1|A+1NZG|1|B | Crystal structure of A-DNA decamer GCGTA(3ME)ACGC, with a modified 5-methyluridine | X-RAY DIFFRACTION | 1.6 | 10 | A-form double helix,double helix,structure | |
47 | 1MLX|1|A+1MLX|1|B | Crystal Structure Analysis of a 2'-O-[2-(Methylthio)-ethyl]-Modified Oligodeoxynucleotide Duplex | X-RAY DIFFRACTION | 1.25 | 10 | A-form double helix,double helix,structure | |
48 | 3OZ3|1|A+3OZ3|1|B | Vinyl Carbocyclic LNA | X-RAY DIFFRACTION | 1.57 | 10 | A-form double helix,double helix,structure | |
49 | 410D|1|A+410D|1|B | DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-ETHOXYMETHYLENE RIBONUCLEOSIDE | X-RAY DIFFRACTION | 1.6 | 10 | A-form double helix,double helix,structure | |
50 | 3OZ5|1|A+3OZ5|1|B | S-Methyl Carbocyclic LNA | X-RAY DIFFRACTION | 1.36 | 10 | A-form double helix,double helix,structure | |
51 | 1MA8|1|A+1MA8|1|B | A-DNA decamer GCGTA(UMS)ACGC with incorporated 2'-methylseleno-uridine | X-RAY DIFFRACTION | 1.3 | 10 | A-form double helix,double helix,structure | |
52 | 1R3G|1|A+1R3G|1|B | 1.16A X-ray structure of the synthetic DNA fragment with the incorporated 2'-O-[(2-Guanidinium)ethyl]-5-methyluridine residues | X-RAY DIFFRACTION | 1.16 | 10 | A-form double helix,double helix,structure | |
53 | 3EY2|1|A+3EY2|1|B | A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution | X-RAY DIFFRACTION | 1.04 | 10 | A-form double helix,double helix,structure | |
54 | 1DPL|1|A+1DPL|1|B | A-DNA DECAMER GCGTA(T23)TACGC WITH INCORPORATED 2'-METHOXY-3'-METHYLENEPHOSPHATE-THYMIDINE | X-RAY DIFFRACTION | 0.83 | 10 | A-form double helix,double helix,structure | |
55 | 1KGK|1|A+1KGK|1|B | Direct Observation of a Cytosine Analog that Forms Five Hydrogen Bonds to Guanosine; Guanyl G-Clamp | X-RAY DIFFRACTION | 1 | 10 | A-form double helix,double helix,structure | |
56 | 1Y84|1|A+1Y84|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(imidazolyl)ethyl] Thymidine (T*) | X-RAY DIFFRACTION | 1.6 | 10 | A-form double helix,double helix,structure | |
57 | 1ZEX|1|A+1ZEX|1|B | CCG A-DNA | X-RAY DIFFRACTION | 1.65 | 10 | A-form double helix,double helix,structure | |
58 | 3OZ4|1|A+3OZ4|1|B | R-Methyl Carbocyclic LNA | X-RAY DIFFRACTION | 1.59 | 10 | A-form double helix,double helix,structure | |
59 | 1I5W|1|A+1I5W|1|B | A-DNA DECAMER GCGTA(TLN)ACGC | X-RAY DIFFRACTION | 1.4 | 10 | A-form double helix,double helix,structure | |
60 | 440D|1|A+440D|1|B | HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) | X-RAY DIFFRACTION | 1.1 | 10 | A-form double helix,double helix,structure | |
61 | 160D|1|A+160D|1|B | HIGH RESOLUTION CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCCGGCCGGG): NOVEL INTERMOLECULAR BASE-PAIRED G*(G.C) TRIPLETS | X-RAY DIFFRACTION | 1.65 | 10 | A-form double helix,double helix,structure | |
62 | 221D|1|A+221D|1|B | INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA | X-RAY DIFFRACTION | 1.9 | 10 | A-form double helix,double helix,structure | |
63 | 213D|1|A+213D|1|B | CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCIGGCCM5CGG) AT 1.6 ANGSTROMS SHOWING THE UNEXPECTED WOBBLE I.M5C BASE PAIR | X-RAY DIFFRACTION | 1.6 | 10 | A-form double helix,double helix,structure | |
64 | 240D|1|A+240D|1|B | EFFECT OF END BASE STEPS ON DNA FORM: CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCGGGCCCGG) | X-RAY DIFFRACTION | 2 | 10 | A-form double helix,double helix,structure | |
65 | 137D|1|A+137D|1|B | A-DNA DECAMER D(GCGGGCCCGC)-ORTHORHOMBIC CRYSTAL FORM | X-RAY DIFFRACTION | 1.7 | 10 | A-form double helix,double helix,structure | |
66 | 414D|1|C+414D|1|D | 5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3' | X-RAY DIFFRACTION | 1.9 | 10 | double helix,structure | |
67 | 1ZFA|1|A+1ZFA|1|B | GGA Duplex A-DNA | X-RAY DIFFRACTION | 1.56 | 10 | A-form double helix,double helix,structure | |
68 | 383D|1|A+383D|1|B | Hydration and recognition of methylated CPG steps in DNA | X-RAY DIFFRACTION | 1.7 | 10 | A-form double helix,double helix,structure | |
69 | 1ZF8|1|A+1ZF8|1|B | GGT Duplex A-DNA | X-RAY DIFFRACTION | 1.48 | 10 | A-form double helix,double helix,structure | |
70 | 414D|1|A+414D|1|B | 5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3' | X-RAY DIFFRACTION | 1.9 | 10 | double helix,structure | |
71 | 318D|1|A+318D|1|B | CRYSTAL STRUCTURES OF D(CCGGGCC(BR)5CGG)-HEXAGONAL FORM | X-RAY DIFFRACTION | 2 | 10 | A-form double helix,double helix,structure | |
72 | 3HPO|1|C+3HPO|1|B | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus Y714S mutant bound to G:T mismatch | X-RAY DIFFRACTION | 1.75 | 10 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
73 | 2BDP|1|T+2BDP|1|P | CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA | X-RAY DIFFRACTION | 1.8 | 10 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
74 | 3PA0|1|A | Crystal Structure of Chiral Gamma-PNA with Complementary DNA Strand: Insight Into the Stability and Specificity of Recognition an Conformational Preorganization | X-RAY DIFFRACTION | 1.6 | 10 | NAKB_NA_annotation | NAKB_protein_annotation |
75 | 3PA0|1|B | Crystal Structure of Chiral Gamma-PNA with Complementary DNA Strand: Insight Into the Stability and Specificity of Recognition an Conformational Preorganization | X-RAY DIFFRACTION | 1.6 | 10 | NAKB_NA_annotation | NAKB_protein_annotation |
76 | 1NR8|1|A | The crystal structure of a D-Lysine-based chiral PNA-DNA duplex | X-RAY DIFFRACTION | 1.66 | 10 | NAKB_NA_annotation | NAKB_protein_annotation |
77 | 1S23|1|A | Crystal Structure Analysis of the B-DNA Decamer CGCAATTGCG | X-RAY DIFFRACTION | 1.6 | 10 | B-form double helix,double helix,structure | |
78 | 473D|1|A+473D|1|B | NI2+/GUANINE INTERACTIONS AND NETROPSIN/GUANINE STACKING IN D(CGTATATACG)2 | X-RAY DIFFRACTION | 1.58 | 10 | B-form double helix,double helix,structure | |
79 | 1WD0|1|B+1WD0|1|C | Crystal structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers | X-RAY DIFFRACTION | 1.9 | 10 | chromatin,nucleosome,structural | |
80 | 1SA3|1|C+1SA3|1|D | An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site | X-RAY DIFFRACTION | 1.95 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
81 | 1SA3|1|E+1SA3|1|F | An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site | X-RAY DIFFRACTION | 1.95 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
82 | 1SM5|1|C+1SM5|1|D | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
83 | 1SM5|1|A+1SM5|1|B | Crystal Structure of a DNA Decamer Containing a Thymine-dimer | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
84 | 1BC8|1|A+1BC8|1|B | STRUCTURES OF SAP-1 BOUND TO DNA SEQUENCES FROM THE E74 AND C-FOS PROMOTERS PROVIDE INSIGHTS INTO HOW ETS PROTEINS DISCRIMINATE BETWEEN RELATED DNA TARGETS | X-RAY DIFFRACTION | 1.93 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
85 | 2VOA|1|C+2VOA|1|D | Structure of an AP Endonuclease from Archaeoglobus fulgidus | X-RAY DIFFRACTION | 1.7 | 10 | double helix,structure | enzyme,hydrolase,lyase,nuclease |
86 | 3BDP|1|P+3BDP|1|T | DNA POLYMERASE I/DNA COMPLEX | X-RAY DIFFRACTION | 1.9 | 10 | double helix,structure | enzyme,polymerase,transferase |
87 | 307D|1|A+307D|1|B | Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis | X-RAY DIFFRACTION | 1.85 | 10 | B-form double helix,double helix,structure | |
88 | 307D|1|E+307D|1|F | Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis | X-RAY DIFFRACTION | 1.85 | 10 | B-form double helix,double helix,structure | |
89 | 307D|1|C+307D|1|D | Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis | X-RAY DIFFRACTION | 1.85 | 10 | B-form double helix,double helix,structure | |
90 | 1SK5|1|A+1SK5|1|B | The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition | X-RAY DIFFRACTION | 0.89 | 10 | B-form double helix,double helix,structure | |
91 | 1ZFC|1|A+1ZFC|1|B | ATC Duplex B-DNA | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
92 | 1IKK|1|A+1IKK|1|B | Intrinsic Bending and Deformability at the T-A step of CCTTTAAAGG: A Comparative Analysis of T-A and A-T steps within A-tracts | X-RAY DIFFRACTION | 1.6 | 10 | B-form double helix,double helix,structure | |
93 | 1D49|1|A+1D49|1|B | THE STRUCTURE OF A B-DNA DECAMER WITH A CENTRAL T-A STEP: C-G-A-T-T-A-A-T-C-G | X-RAY DIFFRACTION | 1.5 | 10 | B-form double helix,double helix,structure | |
94 | 1D23|1|A+1D23|1|B | THE STRUCTURE OF B-HELICAL C-G-A-T-C-G-A-T-C-G AND COMPARISON WITH C-C-A-A-C-G-T-T-G-G. THE EFFECT OF BASE PAIR REVERSALS | X-RAY DIFFRACTION | 1.5 | 10 | B-form double helix,double helix,structure | |
95 | 1D57|1|A+1D57|1|B | ALTERNATIVE STRUCTURES FOR ALTERNATING POLY(DA-DT) TRACTS: THE STRUCTURE OF THE B-DNA DECAMER C-G-A-T-A-T-A-T-C-G | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
96 | 1D56|1|A+1D56|1|B | ALTERNATIVE STRUCTURES FOR ALTERNATING POLY(DA-DT) TRACTS: THE STRUCTURE OF THE B-DNA DECAMER C-G-A-T-A-T-A-T-C-G | X-RAY DIFFRACTION | 1.7 | 10 | B-form double helix,double helix,structure | |
97 | 1JGG|1|C+1JGG|1|D | Even-skipped Homeodomain Complexed to AT-rich DNA | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
98 | 1DA3|1|A+1DA3|1|B | THE CRYSTAL STRUCTURE OF THE TRIGONAL DECAMER C-G-A-T-C-G-6MEA-T-C-G: A B-DNA HELIX WITH 10.6 BASE-PAIRS PER TURN | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
99 | 196D|1|A+196D|1|B | CRYSTAL STRUCTURE OF C-T-C-T-C-G-A-G-A-G: IMPLICATIONS FOR THE STRUCTURE OF THE HOLLIDAY JUNCTION | X-RAY DIFFRACTION | 1.7 | 10 | B-form double helix,double helix,structure | |
100 | 1I6J|1|C+1I6J|1|B | CRYSTAL STRUCTURE OF A PSEUDO-16-MER DNA WITH STACKED GUANINES AND TWO G-A MISPAIRS COMPLEXED WITH THE N-TERMINAL FRAGMENT OF MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
101 | 334D|1|A+334D|1|B | DEFINING GC-SPECIFICITY IN THE MINOR GROOVE: SIDE-BY-SIDE BINDING OF THE DI-IMIDAZOLE LEXITROPSIN TO C-A-T-G-G-C-C-A-T-G | X-RAY DIFFRACTION | 1.8 | 10 | B-form double helix,double helix,structure | |
102 | 126D|1|A+126D|1|B | CRYSTAL STRUCTURE OF CATGGCCATG AND ITS IMPLICATIONS FOR A-TRACT BENDING MODELS | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
103 | 1ZF7|1|A+1ZF7|1|B | GAC Duplex B-DNA | X-RAY DIFFRACTION | 1.05 | 10 | B-form double helix,double helix,structure | |
104 | 1S1K|1|A | INFLUENCE OF GROOVE INTERACTIONS ON DNA HOLLIDAY JUNCTION FORMATION | X-RAY DIFFRACTION | 1.9 | 10 | B-form double helix,double helix,structure | |
105 | 1WQY|1|A+1WQY|1|B | X-RAY structural analysis of B-DNA decamer D(CCATTAATGG)2 crystal grown in D2O solution | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
106 | 1ZF0|1|A+1ZF0|1|B | B-DNA | X-RAY DIFFRACTION | 1.5 | 10 | B-form double helix,double helix,structure | |
107 | 1ZFB|1|A+1ZFB|1|B | GGC Duplex B-DNA | X-RAY DIFFRACTION | 1.65 | 10 | B-form double helix,double helix,structure | |
108 | 2WIW|1|C+2WIW|1|D | Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate | X-RAY DIFFRACTION | 1.8 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
109 | 1L4J|1|A+1L4J|1|B+1L4J|1|C+1L4J|1|D | Holliday Junction TCGGTACCGA with Na and Ca Binding Sites. | X-RAY DIFFRACTION | 1.85 | 10 | Holliday junction,structure | |
110 | 1ZFG|1|A+1ZFG|1|B | CTC Duplex B-DNA | X-RAY DIFFRACTION | 1.75 | 10 | double helix,structure | |
111 | 158D|1|A+158D|1|B | CRYSTALLOGRAPHIC ANALYSIS OF C-C-A-A-G-C-T-T-G-G AND ITS IMPLICATIONS FOR BENDING IN B-DNA | X-RAY DIFFRACTION | 1.9 | 10 | B-form double helix,double helix,structure | |
112 | 2D25|1|A+2D25|1|B | C-C-A-G-G-C-M5C-T-G-G; HELICAL FINE STRUCTURE, HYDRATION, AND COMPARISON WITH C-C-A-G-G-C-C-T-G-G | X-RAY DIFFRACTION | 1.75 | 10 | B-form double helix,double helix,structure | |
113 | 122D|1|A+122D|1|B | DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR | X-RAY DIFFRACTION | 1.7 | 10 | B-form double helix,double helix,structure | |
114 | 123D|1|A+123D|1|B | DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR | X-RAY DIFFRACTION | 1.7 | 10 | B-form double helix,double helix,structure | |
115 | 1BD1|1|A | CRYSTALLOGRAPHIC STUDY OF ONE TURN OF G/C-RICH B-DNA | X-RAY DIFFRACTION | 1.6 | 10 | B-form double helix,double helix,structure | |
116 | 183D|1|A | X-RAY STRUCTURE OF A DNA DECAMER CONTAINING 7, 8-DIHYDRO-8-OXOGUANINE | X-RAY DIFFRACTION | 1.6 | 10 | B-form double helix,double helix,structure | |
117 | 1EN9|1|A | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. | X-RAY DIFFRACTION | 0.985 | 10 | B-form double helix,double helix,structure | |
118 | 3GGK|1|A | Locating monovalent cations in one turn of G/C rich B-DNA | X-RAY DIFFRACTION | 0.87 | 10 | B-form double helix,double helix,structure | |
119 | 3GGI|1|A | Locating monovalent cations in one turn of G/C rich B-DNA | X-RAY DIFFRACTION | 0.98 | 10 | B-form double helix,double helix,structure | |
120 | 1ZF5|1|A | GCT duplex B-DNA | X-RAY DIFFRACTION | 0.99 | 10 | B-form double helix,double helix,structure | |
121 | 1ENE|1|A | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. | X-RAY DIFFRACTION | 0.985 | 10 | B-form double helix,double helix,structure | |
122 | 3I5E|1|A | Allosteric Modulation of DNA by Small Molecules | X-RAY DIFFRACTION | 0.98 | 10 | B-form double helix,double helix,structure | |
123 | 3DNB|1|A | HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER | X-RAY DIFFRACTION | 1.3 | 10 | B-form double helix,double helix,feature,mispair,structure | |
124 | 1CW9|1|A+1CW9|1|B | DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE | X-RAY DIFFRACTION | 1.55 | 10 | B-form double helix,double helix,structure | |
125 | 5DNB|1|A | STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-G-T-T-G-G AND COMPARISON WITH ISOMORPHOUS DECAMERS C-C-A-A-G-A-T-T-G-G AND C-C-A-G-G-C-C-T-G-G | X-RAY DIFFRACTION | 1.4 | 10 | B-form double helix,double helix,structure | |
126 | 1D61|1|A | THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: MONOCLINIC FORM | X-RAY DIFFRACTION | 1.3 | 10 | B-form double helix,double helix,structure | |
127 | 2OKS|1|A | X-ray Structure of a DNA Repair Substrate Containing an Alkyl Interstrand Crosslink at 1.65 Resolution | X-RAY DIFFRACTION | 1.65 | 10 | B-form double helix,double helix,structure | |
128 | 1D62|1|A | THE STRUCTURE OF A /B-DNA$ DECAMER WITH AN I(SLASH)*A MISMATCH AND COMPARISON WITH THE G(SLASH)*A MISMATCH | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
129 | 1EN8|1|A | 1 A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM | X-RAY DIFFRACTION | 0.985 | 10 | B-form double helix,double helix,structure | |
130 | 1CW9|1|C+1CW9|1|D | DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE | X-RAY DIFFRACTION | 1.55 | 10 | B-form double helix,double helix,structure | |
131 | 365D|1|A+365D|1|B | STRUCTURAL BASIS FOR G C RECOGNITION IN THE DNA MINOR GROOVE | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
132 | 3LDY|1|C+3LDY|1|B | An extraordinary mechanism of DNA perturbation exhibited by the rare-cutting HNH restriction endonuclease PacI | X-RAY DIFFRACTION | 1.97 | 10 | B-form double helix,double helix,feature,mispair,structure | enzyme,hydrolase,nuclease |
133 | 1D02|1|C+1D02|1|D | CRYSTAL STRUCTURE OF MUNI RESTRICTION ENDONUCLEASE IN COMPLEX WITH COGNATE DNA | X-RAY DIFFRACTION | 1.7 | 10 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
134 | 3KDE|1|A+3KDE|1|B | Crystal structure of the THAP domain from D. melanogaster P-element transposase in complex with its natural DNA binding site | X-RAY DIFFRACTION | 1.74 | 10 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,recombinase,regulatory |
135 | 3OMJ|1|A+3OMJ|1|B | Structural Basis for Cyclic Py-Im Polyamide Allosteric Inhibition of Nuclear Receptor Binding | X-RAY DIFFRACTION | 0.95 | 10 | B-form double helix,double helix,structure | |
136 | 3I5L|1|A+3I5L|1|B | Allosteric Modulation of DNA by Small Molecules | X-RAY DIFFRACTION | 1.18 | 10 | B-form double helix,double helix,structure | |
137 | 1ZFF|1|A | TTC Duplex B-DNA | X-RAY DIFFRACTION | 0.94 | 10 | double helix,structure | |
138 | 1P4Z|1|A | Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions | X-RAY DIFFRACTION | 2 | 10 | B-form double helix,double helix,structure | |
139 | 1EN3|1|A | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM | X-RAY DIFFRACTION | 0.985 | 10 | B-form double helix,double helix,structure | |
140 | 2GWA|1|A+2GWA|1|B | Crystal Structure of a Complex Formed Between the DNA Holliday Junction and a Bis-Acridine Molecule. | X-RAY DIFFRACTION | 1.75 | 10 | Holliday junction,structure | |
141 | 3PBX|1|A+3PBX|1|B | Strontium bound to the sequence d(CCGGCGCCGG) | X-RAY DIFFRACTION | 1.879 | 10 | Holliday junction,structure | |
142 | 2ORH|1|A+2ORH|1|B | Directing Macromolecular Conformation Through Halogen Bonds | X-RAY DIFFRACTION | 1.9 | 10 | Holliday junction,structure | |
143 | 1ZEZ|1|A+1ZEZ|1|B | ACC Holliday Junction | X-RAY DIFFRACTION | 2 | 10 | Holliday junction,structure | |
144 | 1NVN|1|A+1NVN|1|B | Structural Characterisation of the Holliday junction formed by the sequence CCGGTACCGG at 1.8 A | X-RAY DIFFRACTION | 1.8 | 10 | Holliday junction,structure | |
145 | 1NT8|1|A+1NT8|1|B | Structural Characterisation of the Holliday junction formed by the sequence CCGGTACCGG at 2.00 A | X-RAY DIFFRACTION | 2 | 10 | Holliday junction,structure | |
146 | 1P4Y|1|A+1P4Y|1|B | Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions | X-RAY DIFFRACTION | 1.7 | 10 | Holliday junction,structure | |
147 | 1ZF2|1|A+1ZF2|1|B | Four-stranded DNA Holliday Junction (CCC) | X-RAY DIFFRACTION | 1.95 | 10 | Holliday junction,structure | |
148 | 1NVY|1|A+1NVY|1|B | Strontium bound to the Holliday junction sequence d(TCGGTACCGA)4 | X-RAY DIFFRACTION | 1.5 | 10 | Holliday junction,structure | |
149 | 1M6G|1|A+1M6G|1|B | Structural Characterisation of the Holliday Junction TCGGTACCGA | X-RAY DIFFRACTION | 1.652 | 10 | Holliday junction,structure | |
150 | 1ZF3|1|A+1ZF3|1|B | ATC Four-stranded DNA Holliday Junction | X-RAY DIFFRACTION | 1.84 | 10 | Holliday junction,structure | |
151 | 1ZF4|1|A+1ZF4|1|B | ATC Four-stranded DNA Holliday Junction | X-RAY DIFFRACTION | 1.65 | 10 | Holliday junction,structure | |
152 | 2ORF|1|A+2ORF|1|B | Directing Macromolecular Conformation Through Halogen Bonds | X-RAY DIFFRACTION | 1.85 | 10 | Holliday junction,structure | |
153 | 2ORG|1|A+2ORG|1|B | Directing Macromolecular Conformation Through Halogen Bonds | X-RAY DIFFRACTION | 2 | 10 | Holliday junction,structure | |
154 | 1NQS|1|A+1NQS|1|B | Structural Characterisation of the Holliday Junction formed by the sequence d(TCGGTACCGA) at 1.97 A | X-RAY DIFFRACTION | 1.97 | 10 | Holliday junction,structure | |
155 | 1L6B|1|A+1L6B|1|B | CRYSTAL STRUCTURE ANALYSIS OF THE ALL DNA HOLLIDAY JUNCTION STRUCTURE OF CCGGTACM5CGG | X-RAY DIFFRACTION | 1.5 | 10 | Holliday junction,structure | |
156 | 3IGT|1|A+3IGT|1|B+3IGT|1|C+3IGT|1|D | A rare nucleotide base tautomer in the structure of an asymmetric DNA junction | X-RAY DIFFRACTION | 1.9 | 10 | Holliday junction,structure | |
157 | 1P54|1|A+1P54|1|B | Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions | X-RAY DIFFRACTION | 1.9 | 10 | Holliday junction,structure |
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