Equivalence class DNA_1.5_71834.2 Current
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1DFM|1|C+ 1DFM|1|D (rep) | DNA (5'-D(*TP*AP*TP*TP*AP*TP*AP*GP*AP*TP*CP*TP*AP*TP*AP*A)-3') | Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer | X-ray diffraction | 1.5 | 2000-02-21 | ||||
2 | 1DP7|1|D | DNA (5'-D(*CP*GP*(BRU)P*TP*AP*CP*CP*AP*(BRU)P*GP*GP*TP*AP*AP*CP*G)-3') | COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE | X-ray diffraction | 1.5 | 2000-03-06 |
Release history
Release | 0.12 |
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Date | 2011-04-11 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 1DFM|1|C+1DFM|1|D | Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer | X-RAY DIFFRACTION | 1.5 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
2 | 1DP7|1|D | COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE | X-RAY DIFFRACTION | 1.5 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
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