Equivalence class DNA_1.5_40903.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 476D|1|A+ 476D|1|B (rep) | 5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | CALCIUM FORM OF B-DNA UNDECAMER GCGAATTCGCG | X-ray diffraction | 1.3 | 1999-07-19 | ||||
| 2 | 3NDH|1|C+ 3NDH|1|D | DNA (5'-D(*G*GP*TP*AP*CP*GP*CP*GP*AP*TP*G)-3'), DNA (5'-D(*C*CP*AP*TP*CP*GP*CP*GP*TP*AP*C)-3') | Restriction endonuclease in complex with substrate DNA | X-ray diffraction | 1.3 | 2010-07-28 | ||||
| 3 | 2OAA|1|C+ 2OAA|1|D+ 2OAA|1|E+ 2OAA|1|F | 5'-D(*GP*GP*TP*AP*CP*CP*TP*GP*GP*AP*T)-3', 5'-D(*CP*AP*TP*CP*CP*AP*GP*GP*TP*AP*C)-3' | Restriction endonuclease MvaI-cognate DNA substrate complex | X-ray diffraction | 1.5 | 2007-02-20 | ||||
| 4 | 2ODI|1|C+ 2ODI|1|D+ 2ODI|1|E+ 2ODI|1|F | 5'-D(*AP*AP*CP*CP*CP*GP*GP*AP*GP*AP*C)-3', 5'-D(*CP*TP*CP*CP*GP*GP*GP*TP*TP*GP*T)-3' | Restriction Endonuclease BCNI-Cognate DNA Substrate Complex | X-ray diffraction | 1.45 | 2007-03-20 | ||||
| 5 | 3GOX|1|C+ 3GOX|1|D | 5'-(*DCP*DTP*DCP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DA)-3', 5'-(*DTP*DAP*DCP*DGP*DTP*DCP*DGP*DAP*DGP*DTP*DC)-3' | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA | X-ray diffraction | 1.5 | 2009-04-28 | ||||
| 6 | 2AVH|1|A | 5'-D(*GP*GP*GP*GP*TP*TP*TP*GP*GP*GP*G)-3' | G4T3G4 dimeric quadruplex structure | X-ray diffraction | 1.5 | 2006-03-28 | ||||
| 7 | 2NQ9|1|D+ 2NQ9|1|B+ 2NQ9|1|C | 5'-D(*AP*TP*AP*TP*CP*T)-3', 5'-D(P*(3DR)P*AP*GP*AP*T)-3', 5'-D(*AP*TP*CP*TP*GP*AP*AP*GP*TP*AP*T)-3' | High resolution crystal structure of Escherichia coli endonuclease IV (Endo IV) Y72A mutant bound to damaged DNA | X-ray diffraction | 1.45 | 2007-11-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3NDH|1|C+3NDH|1|D | Restriction endonuclease in complex with substrate DNA | X-RAY DIFFRACTION | 1.3 | 11 | double helix,structure | enzyme,hydrolase,nuclease |
| 2 | 2ODI|1|C+2ODI|1|D+2ODI|1|E+2ODI|1|F | Restriction Endonuclease BCNI-Cognate DNA Substrate Complex | X-RAY DIFFRACTION | 1.45 | 11 | enzyme,hydrolase,nuclease | |
| 3 | 2OAA|1|C+2OAA|1|D+2OAA|1|E+2OAA|1|F | Restriction endonuclease MvaI-cognate DNA substrate complex | X-RAY DIFFRACTION | 1.5 | 11 | double helix,structure | enzyme,hydrolase,nuclease |
| 4 | 476D|1|A+476D|1|B | CALCIUM FORM OF B-DNA UNDECAMER GCGAATTCGCG | X-RAY DIFFRACTION | 1.3 | 11 | B-form double helix,double helix,structure | |
| 5 | 3GOX|1|C+3GOX|1|D | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA | X-RAY DIFFRACTION | 1.5 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 6 | 2NQ9|1|D+2NQ9|1|B+2NQ9|1|C | High resolution crystal structure of Escherichia coli endonuclease IV (Endo IV) Y72A mutant bound to damaged DNA | X-RAY DIFFRACTION | 1.45 | 11 | enzyme,hydrolase,nuclease | |
| 7 | 2AVH|1|A | G4T3G4 dimeric quadruplex structure | X-RAY DIFFRACTION | 1.5 | 11 | quadruplex,structure |
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