Internal Loop Motif Atlas Release 4.8

#	Motif	Num Nts	Instances
1	IL_52926.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Single bulged A (21) Single bulged U (20) Single bulged C (14) Multiple bulged bases (8) Single bulged G (8) Basepair outside cWW (2) Major groove outside cWW, minor groove, intercalation pocket (2) Stack outside cWW (2) Major groove platform (1) Intercalation pocket (1)	4	102
2	IL_14824.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents UU cWW (7) Isolated cWH basepair (4) CA cWW (3) Isolated non-canonical cWW with bulges (3) Isolated near basepair (2) CC cWW (1) UU cWW water inserted (1) Decoding loop related (1)	6	100
3	IL_51020.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents Decoding loop related (8) Single stack bend (2) Stack and bulge (2)	5	23
4	IL_10962.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (16) Minor groove platform related (1) Decoding loop related (1)	8	22
5	IL_66572.1 View exemplar Basepair signature: cWW-tSH-cSH-cWW History status: New id, no parents Major groove platform (8) Major groove platform; stack outside cWW (3)	5	21
6	IL_10312.1 View exemplar Basepair signature: cWW-cWH-cWW History status: New id, no parents Isolated cWH basepair (14) Decoding loop with one bulged A (1) cWH basepair with bulged bases (1)	6	17
7	IL_14214.1 View exemplar Basepair signature: cWW-tSH-cWW History status: New id, no parents Minor groove platform (8) Multiple bulged bases (1)	5	14
8	IL_37070.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-cWW History status: New id, no parents Triple sheared (12) AAA cross-strand stack (1)	10	13
9	IL_52985.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-tSS-R-cWW History status: New id, no parents Kink-turn (8) Kink-turn with non-sequential stacking (1)	12	12
10	IL_69086.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Multiple bulged bases (4) Single bulged C (1)	4	11
11	IL_49880.1 View exemplar Basepair signature: cWW-cSW-cWW History status: New id, no parents Major groove minor groove platform; mini C-loop (4) Major groove outside cWW, minor groove, intercalation pocket (3)	6	10
12	IL_75871.1 View exemplar Basepair signature: cWW-cWW-cSH-cWW-cWW History status: New id, no parents Major groove platform with extra cWW (2) Isolated basepair with bulged bases (1)	7	9
13	IL_42029.1 View exemplar Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW History status: New id, no parents tSH-tHW-tHS-cWW (3) Tandem non-canonical cWW pairs with near WC pairs (1) Other IL (1)	12	8
14	IL_00679.1 View exemplar Basepair signature: cWW-cWW-R-tHS-cWW History status: New id, no parents UAA/GAN related (4) Tandem non-canonical cWW pairs (2) UAA/GAN variation (1)	9	8
15	IL_52597.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents Minor groove platform (1)	5	7
16	IL_46523.1 View exemplar Basepair signature: cWW-tWH-cSH-L-cWS-cWW History status: New id, no parents C-loop (5)	7	7
17	IL_08796.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: New id, no parents Double sheared (5)	8	7
18	IL_80041.1 View exemplar Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 8x7 Sarcin-Ricin; G-bulge (5)	15	6
19	IL_96112.1 View exemplar Basepair signature: cWW-tSH-tHW-tHS-cWW History status: New id, no parents tSH-tHW-tHS (2) 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)	10	6
20	IL_86765.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents Sarcin-Ricin target in LSU H95; G-bulge (1) 7x6 Sarcin-Ricin; G-bulge (1)	13	6
21	IL_62144.1 View exemplar Basepair signature: cWW-R-tWH-cSH-cWW History status: New id, no parents Receptor of 11-nt loop-receptor motif (4)	9	6
22	IL_76746.1 View exemplar Basepair signature: cWW-tWH-L-tHS-cWW History status: New id, no parents UAA/GAN (3)	9	6
23	IL_62667.1 View exemplar Basepair signature: cWW-L-L-cWW History status: New id, no parents Major groove platform; stack outside cWW (2)	6	6
24	IL_70416.1 View exemplar Basepair signature: cWW-L-cWS-cWW History status: New id, no parents	7	5
25	IL_21052.1 View exemplar Basepair signature: cWW-tSH-tHS-tSS-R-cWW History status: New id, no parents Kink-turn from U4 (5)	10	5
26	IL_92173.1 View exemplar Basepair signature: cWW-cWW-cWH-cWW History status: New id, no parents Tandem non-canonical cWW pairs (2)	8	5
27	IL_08243.1 View exemplar Basepair signature: cWW-cWS-cWW History status: New id, no parents Isolated near basepair (1)	6	4
28	IL_48471.1 View exemplar Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW History status: New id, no parents Bacterial 5S Loop E (4)	18	4
29	IL_52690.1 View exemplar Basepair signature: cWW-L-R-R-L-L-cWW History status: New id, no parents Pseudoknot (1)	9	4
30	IL_04894.1 View exemplar Basepair signature: cWW-tHS-cWW History status: New id, no parents Isolated tHS basepair with bulges (2)	6	4
31	IL_09826.1 View exemplar Basepair signature: cWW-tSH-tWH-tSH-tHS-cWW History status: New id, no parents	10	4
32	IL_89588.1 View exemplar Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-R-cWW-cWW History status: New id, no parents	19	4
33	IL_15980.1 View exemplar Basepair signature: cWW-tSH-cWS-cWW History status: New id, no parents	8	4
34	IL_51310.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW History status: New id, no parents Kink-turn (3)	12	3
35	IL_44142.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents Isolated non-canonical cWW with bulges (1)	6	3
36	IL_83226.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: New id, no parents Major groove minor groove platform with extra cWW (1)	8	3
37	IL_75908.1 View exemplar Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW History status: New id, no parents tSH-tHW-tWH-tHS (3)	12	3
38	IL_20178.1 View exemplar Basepair signature: cWW-cSH-tHW-cWW History status: New id, no parents Receptor of 11-nt loop-receptor motif (2) Other IL (1)	8	3
39	IL_21212.1 View exemplar Basepair signature: cWW-L-L-tWH-L-L-L-cWW History status: New id, no parents	11	3
40	IL_09453.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents	4	3
41	IL_02452.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: New id, no parents Quadruple sheared (2)	12	3
42	IL_81115.1 View exemplar Basepair signature: cWW-L-R-tHS-cWW-cWW History status: New id, no parents	10	3
43	IL_23266.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-bif-cWW History status: New id, no parents	12	3
44	IL_45261.1 View exemplar Basepair signature: cWW-cWH-tWS-cWW History status: New id, no parents cWH basepair and non-canonical AC (3)	8	3
45	IL_18831.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Single bulged A (1)	4	3
46	IL_41217.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: New id, no parents	7	3
47	IL_13198.1 View exemplar Basepair signature: cWW-cWW-tWH-L-tHS-cWW History status: New id, no parents	11	3
48	IL_87297.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: New id, no parents Double sheared (2)	8	2
49	IL_33743.1 View exemplar Basepair signature: cWW-R-R-tWH-L-R-cWW History status: New id, no parents	10	2
50	IL_23820.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents	9	2
51	IL_04824.1 View exemplar Basepair signature: cWW-tSH-L-R-R-L-bif-bif-cWW-cWW History status: New id, no parents	14	2
52	IL_32946.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-bif-cWW History status: New id, no parents	12	2
53	IL_85646.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (2)	8	2
54	IL_43212.1 View exemplar Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW History status: New id, no parents	14	2
55	IL_79934.1 View exemplar Basepair signature: cWW-R-tHW-tHW-tWW-cWW History status: New id, no parents tHW-tHW cross-strand stack (1)	11	2
56	IL_58816.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents	4	2
57	IL_73178.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW History status: New id, no parents	18	2
58	IL_07740.1 View exemplar Basepair signature: cWW-cWW-tSH-tHS-tSS-R-cWW History status: New id, no parents Kink-turn (2)	12	2
59	IL_66409.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	2
60	IL_20609.1 View exemplar Basepair signature: cWW-cHH-cWW History status: New id, no parents	5	2
61	IL_31143.1 View exemplar Basepair signature: cWW-tSH-cSH-cWW History status: New id, no parents Major groove platform with extra pair (2)	7	2
62	IL_28072.1 View exemplar Basepair signature: cWW-cWW-L-tHS-cWW History status: New id, no parents	8	2
63	IL_93089.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents	6	2
64	IL_68510.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Multiple bulged bases (1)	4	2
65	IL_46434.1 View exemplar Basepair signature: cWW-L-L-L-cSH-L-cWW History status: New id, no parents	10	2
66	IL_56108.1 View exemplar Basepair signature: cWW-L-L-L-L-cWW History status: New id, no parents	8	2
67	IL_59507.1 View exemplar Basepair signature: cWW-tWH-L-tWW-tHW-cSH-cWW History status: New id, no parents	11	2
68	IL_59511.1 View exemplar Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2)	17	2
69	IL_75525.1 View exemplar Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW History status: New id, no parents	12	2
70	IL_92668.1 View exemplar Basepair signature: cWW-cSS-cSS-R-cWW History status: New id, no parents 180 degree turn (1)	5	2
71	IL_00909.1 View exemplar Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-cSS-R-R-L-cWW History status: New id, no parents	13	2
72	IL_89327.1 View exemplar Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-bif-cWW History status: New id, no parents	13	2
73	IL_44531.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents	5	2
74	IL_86541.1 View exemplar Basepair signature: cWW-cSH-cSH-cWS-cWW History status: New id, no parents Minor groove platform (2)	6	2
75	IL_69856.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHS-cWW History status: New id, no parents	11	1
76	IL_43033.1 View exemplar Basepair signature: cWW-L-R-L-tHW-L-L-cWW History status: New id, no parents	11	1
77	IL_91930.1 View exemplar Basepair signature: cWW-L-L-L-tHS-cWW History status: New id, no parents	9	1
78	IL_75162.1 View exemplar Basepair signature: cWW-L-R-R-R-L-L-cSS-tSS-cWW History status: New id, no parents	14	1
79	IL_66587.1 View exemplar Basepair signature: cWW-tSW-L-cWS-tSW-R-R-cWW History status: New id, no parents Symmetric double minor groove platform (1)	9	1
80	IL_70470.1 View exemplar Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)	13	1
81	IL_64146.1 View exemplar Basepair signature: cWW-bif-tSH-tWH-tHW-tHS-cWW-cWW History status: New id, no parents tSH-tHW-tHS with extra cWW pairs (1)	14	1
82	IL_47463.1 View exemplar Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW History status: New id, no parents	14	1
83	IL_47996.1 View exemplar Basepair signature: cWW-tSH-L-tHS-cWW History status: New id, no parents UAA/GAN variation (1)	9	1
84	IL_88523.1 View exemplar Basepair signature: cWW-R-R-tWS-L-R-cWW History status: New id, no parents	10	1
85	IL_62458.1 View exemplar Basepair signature: cWW-L-R-cWW-L-L-tSW-L-cWW History status: New id, no parents	13	1
86	IL_02223.1 View exemplar Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW History status: New id, no parents	14	1
87	IL_84034.1 View exemplar Basepair signature: cWW-cWS-tSH-tHS-L-R-L-cWW History status: New id, no parents	13	1
88	IL_32229.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	1
89	IL_50118.1 View exemplar Basepair signature: cWW-L-R-cWW History status: New id, no parents	6	1
90	IL_15026.1 View exemplar Basepair signature: cWW-cWW-R-R-cSH-R-bif-tWH-R-R-R-R-cWS-cWW History status: New id, no parents	21	1
91	IL_99824.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW History status: New id, no parents	13	1
92	IL_63961.1 View exemplar Basepair signature: cWW-cWW-bif-cSH-cWW History status: New id, no parents	7	1
93	IL_42797.1 View exemplar Basepair signature: cWW-R-tSH-L-tHS-cWW-cWW History status: New id, no parents	12	1
94	IL_68237.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHS-cWW History status: New id, no parents	11	1
95	IL_33001.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	1
96	IL_70724.1 View exemplar Basepair signature: cWW-cWW-R-cWW History status: New id, no parents Minor groove platform with extra cWW (1)	7	1
97	IL_49097.1 View exemplar Basepair signature: cWW-tSH-R-R-cWW History status: New id, no parents	8	1
98	IL_03901.1 View exemplar Basepair signature: cWW-R-tWH-tHS-cWW History status: New id, no parents tSH-tHW (1)	9	1
99	IL_70707.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: New id, no parents	10	1
100	IL_00699.1 View exemplar Basepair signature: cWW-tSH-tHH-tHS-cWW History status: New id, no parents	10	1
101	IL_33284.1 View exemplar Basepair signature: cWW-L-R-tHW-cWW History status: New id, no parents	8	1
102	IL_69327.1 View exemplar Basepair signature: cWW-R-bif-tHW-tHS-cWW History status: New id, no parents	10	1
103	IL_99262.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R-cWW History status: New id, no parents	10	1
104	IL_61946.1 View exemplar Basepair signature: cWW-R-R-cWW History status: New id, no parents	6	1
105	IL_45973.1 View exemplar Basepair signature: cWW-tSH-cWW History status: New id, no parents Minor groove platform (1)	5	1
106	IL_44657.1 View exemplar Basepair signature: cWW-R-cSW-R-R-tHS-cWW History status: New id, no parents	11	1
107	IL_75730.1 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW History status: New id, no parents	16	1
108	IL_49695.1 View exemplar Basepair signature: cWW-cSH-R-R-cWW History status: New id, no parents	7	1
109	IL_62988.1 View exemplar Basepair signature: cWW-cHW-tHS-cWW History status: New id, no parents	7	1
110	IL_21020.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHH-cWW History status: New id, no parents	11	1
111	IL_36116.1 View exemplar Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW History status: New id, no parents	11	1
112	IL_48476.1 View exemplar Basepair signature: cWW-L-R-R-L-cWW History status: New id, no parents	8	1
113	IL_82659.1 View exemplar Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW History status: New id, no parents	12	1
114	IL_45251.1 View exemplar Basepair signature: cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW History status: New id, no parents	23	1
115	IL_97129.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW History status: New id, no parents	12	1
116	IL_06246.1 View exemplar Basepair signature: cWW-L-L-tSW-tSS-tHW-L-cWW History status: New id, no parents	11	1
117	IL_14291.1 View exemplar Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW History status: New id, no parents	20	1
118	IL_58863.1 View exemplar Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW History status: New id, no parents	13	1
119	IL_51105.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents Decoding loop related (1)	9	1
120	IL_67443.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-cWW History status: New id, no parents	10	1
121	IL_75167.1 View exemplar Basepair signature: cWW-R-R-R-tSW-L-cWW History status: New id, no parents	10	1
122	IL_18742.1 View exemplar Basepair signature: cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW History status: New id, no parents	17	1
123	IL_45866.1 View exemplar Basepair signature: cWW-L-R-R-R-R-L-L-L-cWW-bif-cWW History status: New id, no parents	16	1
124	IL_21606.1 View exemplar Basepair signature: cWW-tSS-tSH-L-L-L-L-cWW-L-L-L-L-L-L-L-L-cSS-L-L-L-cSW-cWW-L-cWW-R-tSH-R-R-R-R History status: New id, no parents	36	1
125	IL_95489.1 View exemplar Basepair signature: cWW-L-L-L-cWW-L-bif-cWW History status: New id, no parents Vitamin B12 Aptamer (1)	11	1
126	IL_45148.1 View exemplar Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW History status: New id, no parents	15	1
127	IL_14387.1 View exemplar Basepair signature: cWW-tSH-tHW-L-bif-cWW History status: New id, no parents	11	1
128	IL_07871.1 View exemplar Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW History status: New id, no parents	11	1
129	IL_72319.1 View exemplar Basepair signature: cWW-cWW-L-R-R-R-L-L-cWW History status: New id, no parents	12	1
130	IL_58039.1 View exemplar Basepair signature: cWW-tSH-tHH-R-R-R-cWW History status: New id, no parents	11	1
131	IL_23294.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (1)	8	1
132	IL_56251.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: New id, no parents	7	1
133	IL_48232.1 View exemplar Basepair signature: cWW-tWW-cWW History status: New id, no parents	6	1
134	IL_96974.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW History status: New id, no parents	14	1
135	IL_14589.1 View exemplar Basepair signature: cWW-tSH-L-R-R-R-R-tSS-cWW History status: New id, no parents	13	1
136	IL_61806.1 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW History status: New id, no parents	18	1
137	IL_58821.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: New id, no parents	7	1
138	IL_87605.1 View exemplar Basepair signature: cWW-L-L-cWW History status: New id, no parents	6	1
139	IL_23558.1 View exemplar Basepair signature: cWW-tSH-L-L-tHH-cWW History status: New id, no parents	10	1
140	IL_71491.1 View exemplar Basepair signature: cWW-L-R-L-tHH-L-tWH-tHS-cWW History status: New id, no parents 8x6 Sarcin-Ricin with inserted A; G-bulge (1)	14	1
141	IL_98134.1 View exemplar Basepair signature: cWW-tWH-tHS-cWW History status: New id, no parents	8	1
142	IL_99290.1 View exemplar Basepair signature: cWW-R-tHS-cWW History status: New id, no parents	7	1
143	IL_24604.1 View exemplar Basepair signature: cWW-tSH-L-R-R-L-L-L-cWW History status: New id, no parents	12	1
144	IL_33136.1 View exemplar Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW History status: New id, no parents	14	1
145	IL_77620.1 View exemplar Basepair signature: cWW-L-R-R-R-R-R-L-L-L-L-cWW History status: New id, no parents	13	1
146	IL_62746.1 View exemplar Basepair signature: cWW-L-R-R-R-R-R-cWW History status: New id, no parents	10	1
147	IL_63596.1 View exemplar Basepair signature: cWW-L-cSS-tWH-tHW-cWW-cWW History status: New id, no parents Kink-turn related (1)	11	1
148	IL_32206.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: New id, no parents	10	1
149	IL_41843.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents	9	1

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Nucleotide numbers

New id, no parents 149;

Internal Loop Motif Atlas Release 4.8 Download Csv Json

Internal Loop Motif Atlas Release 4.8

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