Internal Loop Motif Atlas Release 4.30

#	Motif	Num Nts	Instances
1	IL_75087.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match CA cWW (5) CC cWW (5) UU cWW (4) Self complementary (2) AA cWW (2) Isolated near basepair (1) CA cWW with bulged A (1) UU cWW water inserted (1)	6	168
2	IL_14307.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged A (73) Major groove intercalation (3)	5	84
3	IL_38425.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged U (64)	5	68
4	IL_68699.1 View exemplar Basepair signature: cWW-cHW-cWW History status: Exact match Isolated cWH basepair (35) UU cWW (5) UC cWW (1) cWH basepair with bulged bases (1) UG cWW (1)	6	63
5	IL_49500.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (35)	8	38
6	IL_55266.1 View exemplar Basepair signature: cWW-cSH-cWW History status: Exact match Major groove platform (22) Major groove platform; stack outside cWW (1)	5	33
7	IL_66479.1 View exemplar Basepair signature: cWW-tSH-tHS-L-R-cWW History status: Exact match Triple sheared (27) AAA cross-strand stack (4)	10	31
8	IL_14771.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single stack bend (19) Single stack bend with bulge (1) Not an internal loop (1)	5	31
9	IL_19174.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged C (28)	5	29
10	IL_47808.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged G (26)	5	29
11	IL_40183.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: Exact match Double sheared (22) tWS-tSW (1) Other IL (1)	8	25
12	IL_30217.1 View exemplar Basepair signature: cWW-tSH-L-cWW History status: Exact match Major groove platform; stack outside cWW (16)	6	22
13	IL_73009.1 View exemplar Basepair signature: cWW-cSH-cWW History status: Exact match Minor groove platform (16) Multiple bulged bases (1)	5	20
14	IL_32847.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (11) Major groove outside cWW, minor groove, intercalation pocket (3) Basepair outside cWW (2) Intercalation pocket (1)	4	20
15	IL_84255.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (12)	4	18
16	IL_39733.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW with bulges (11) Single bulged G, near cWW (1)	6	17
17	IL_38975.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Decoding loop related (9) Stack and bulge (2) Intercalated cWW (1)	5	17
18	IL_07090.1 View exemplar Basepair signature: cWW-tWH-L-tHS-cWW History status: Exact match UAA/GAN (13)	9	16
19	IL_35655.1 View exemplar Basepair signature: cWW-tSS-L-tSH-tHS-tHS-cWW History status: Exact match Kink-turn (14)	12	16
20	IL_80991.1 View exemplar Basepair signature: cWW-tWH-cSH-L-cWS-cWW History status: Exact match C-loop (14)	7	16
21	IL_56317.1 View exemplar Basepair signature: cWW-cSW-cWW History status: Exact match Isolated cWS basepair (6) Isolated near basepair (4) Self complementary (1)	6	16
22	IL_11007.1 View exemplar Basepair signature: cWW-cSH-cWS-cWW History status: Exact match Major groove minor groove platform; mini C-loop (10) Major groove outside cWW, minor groove, intercalation pocket (1)	6	14
23	IL_62844.1 View exemplar Basepair signature: cWW-tSS-L-tSH-tSS-L-R-R-cWW History status: Exact match Kink-turn (8) Kink-turn with non-sequential stacking (4)	12	13
24	IL_31288.1 View exemplar Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 8x7 Sarcin-Ricin; G-bulge (12)	15	13
25	IL_05859.1 View exemplar Basepair signature: cWW-tHS-cWW History status: Exact match Isolated tHS basepair with bulges (10)	6	12
26	IL_51280.1 View exemplar Basepair signature: cWW-tSH-tHW-tHS-cWW History status: Exact match tSH-tHW-tHS (10)	10	12
27	IL_86320.1 View exemplar Basepair signature: cWW-cSH-cWW-cWW History status: Exact match Major groove platform with extra cWW (6)	7	11
28	IL_19378.1 View exemplar Basepair signature: cWW-L-L-R-cWW History status: Exact match Minor groove platform with extra cWW (5)	7	10
29	IL_46386.1 View exemplar Basepair signature: cWW-cWW-L-R-cWW History status: Exact match Tandem non-canonical cWW pairs (8) Other IL (1) Self complementary (1)	8	10
30	IL_59571.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Intercalated tWH (3) Other IL (1) Decoding loop with one bulged A (1) Decoding loop related (1) Isolated cWH basepair (1)	5	10
31	IL_23550.1 View exemplar Basepair signature: cWW-tHS-cWW History status: Exact match Minor groove platform (9)	5	10
32	IL_16568.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Minor groove platform with intercalation (3) Major groove platform with intercalated tWH (2) Minor groove platform (1)	5	10
33	IL_73965.1 View exemplar Basepair signature: cWW-tHS-cWW History status: Exact match Minor groove platform (8) Not an internal loop (1)	5	10
34	IL_71110.1 View exemplar Basepair signature: cWW-tSH-L-L-R-cWW History status: Exact match UAA/GAN related (5) UAA/GAN (2) UAA/GAN variation (2)	9	9
35	IL_73020.1 View exemplar Basepair signature: cWW-tSS-L-L-tHS-cWW History status: Exact match Kink-turn from U4 (5) Kink-turn (3) Kink-turn from T-box riboswitch (1)	10	9
36	IL_01979.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Major groove platform (3) Basepair outside cWW, intercalation pocket (2)	5	9
37	IL_37943.1 View exemplar Basepair signature: cWW-L-L-L-cSH-L-cWW History status: Exact match SSU/LSU pseudoknot (6)	10	9
38	IL_66229.1 View exemplar Basepair signature: cWW-L-L-R-cWW History status: Exact match Major groove platform with extra pair (5) Other IL (1)	7	8
39	IL_05659.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW with bulges (5)	6	8
40	IL_66117.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 7x6 Sarcin-Ricin; G-bulge (5)	13	8
41	IL_21168.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (2)	4	7
42	IL_09863.1 View exemplar Basepair signature: cWW-L-cWS-R-cWW History status: Exact match Decoding loop related (1)	8	7
43	IL_33170.1 View exemplar Basepair signature: cWW-tWH-tHS-cWW History status: Exact match tSH-tHW (3) Other IL (1)	8	7
44	IL_43986.1 View exemplar Basepair signature: cWW-L-tHH-cSH-tWH-tHS-R-cWW History status: Exact match Sarcin-Ricin target in LSU H95; G-bulge (4) 8x6 Sarcin-Ricin with inserted A; G-bulge (1) 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)	13	7
45	IL_58792.1 View exemplar Basepair signature: cWW-L-L-R-R-cWW History status: Exact match Tandem non-canonical cWW pairs (4) Non canonical cWW and near pair (1)	8	7
46	IL_04499.1 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match Minor groove platform (7)	6	7
47	IL_26284.1 View exemplar Basepair signature: cWW-L-L-L-R-R-cWW History status: Exact match Minor groove platform related (2) Tandem non-canonical cWW pairs (2) Multiple bulged bases with non-canonical cWW (1) UAA/GAN variation (1)	9	7
48	IL_62742.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Major groove outside cWW, minor groove, intercalation pocket (3) Major groove minor groove platform; mini C-loop (1)	5	7
49	IL_94365.2 View exemplar Basepair signature: cWW-tSH-tHW-L-L-L-tWH-tHS-R-R-R-cWW History status: Exact match Bacterial 5S Loop E (6)	18	6
50	IL_59079.1 View exemplar Basepair signature: cWW-tSH-L-L-tHH-cWW History status: Exact match	10	6
51	IL_46824.1 View exemplar Basepair signature: cWW-cSH-L-cWS-tSW-R-R-cWW History status: Exact match Symmetric double minor groove platform (5)	10	6
52	IL_12121.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (6)	8	6
53	IL_02944.1 View exemplar Basepair signature: cWW-L-tSH-tSH-tHS-cWW-R-cWW History status: Exact match Triple sheared with non-canonical cWW (3)	14	6
54	IL_17748.1 View exemplar Basepair signature: cWW-cSH-cWW-cWW History status: Exact match Major groove minor groove platform with extra cWW (2)	7	6
55	IL_33204.1 View exemplar Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW History status: Exact match tSH-tSH-tHH-tHS (2)	12	6
56	IL_64508.1 View exemplar Basepair signature: cWW-tWH-cSH-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (6)	8	6
57	IL_38443.1 View exemplar Basepair signature: cWW-L-L-tWH-L-R-R-cWW History status: Exact match tHW-tHW cross-strand stack (4)	11	6
58	IL_64594.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (3)	4	6
59	IL_19888.1 View exemplar Basepair signature: cWW-cWW-tWH-L-tHS-cWW History status: Exact match UAA/GAN with extra cWW (2)	11	5
60	IL_60822.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Stack outside cWW (2) Major groove intercalation (2) Major groove platform outside cWW (1)	5	5
61	IL_16268.1 View exemplar Basepair signature: cWW-cWW-L-cWW History status: Exact match Major groove platform with extra pair (3)	7	5
62	IL_03475.1 View exemplar Basepair signature: cWW-L-tWH-tHS-R-cWW History status: Exact match 5x5 Sarcin-Ricin with intercalated A; G-bulge (2) tSH-tHW-tHS (2)	10	5
63	IL_39642.1 View exemplar Basepair signature: cWW-tWH-tSH-tHW-tHS-cWW-cWW History status: Exact match tSH-tHW-tHS-cWW (3)	12	5
64	IL_07895.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match 180 degree turn (1)	5	5
65	IL_25141.1 View exemplar Basepair signature: cWW-L-L-L-tHS-cWW History status: Exact match	9	5
66	IL_78844.1 View exemplar Basepair signature: cWW-L-L-L-R-cWW History status: Exact match Major groove minor groove platform with extra cWW (2) Isolated basepair with bulged bases (1)	8	5
67	IL_91974.1 View exemplar Basepair signature: cWW-tWW-cWW History status: Exact match Isolated tWW turn (3)	6	5
68	IL_57903.1 View exemplar Basepair signature: cWW-L-L-tWW-L-L-L-cWW History status: Exact match	11	5
69	IL_10078.1 View exemplar Basepair signature: cWW-L-L-R-cWW History status: Exact match Pseudoknot (3)	7	5
70	IL_51199.1 View exemplar Basepair signature: cWW-tWH-L-L-cWW History status: Exact match C-loop (5)	7	5
71	IL_06598.1 View exemplar Basepair signature: cWW-L-L-tWW-cSH-R-cWW History status: Exact match	11	5
72	IL_99308.1 View exemplar Basepair signature: cWW-tSH-tHH-tWW-tSS-tHH-cSS-cWW History status: Exact match Kink-turn related (2)	13	5
73	IL_09221.1 View exemplar Basepair signature: cWW-tSS-cWW-tSH-cWS-L-tWH-tSH-L-L-tSS-L-cWW History status: Exact match	16	5
74	IL_63597.1 View exemplar Basepair signature: cWW-tSH-tSH-L-cWW-R-cWW History status: Exact match	12	5
75	IL_78108.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-tHS-L-cWW History status: Exact match tSH-tHS-tHW (1)	13	5
76	IL_19913.1 View exemplar Basepair signature: cWW-L-L-L-L-R-R-R-R-cWW History status: Exact match Tandem non-canonical cWW pairs with near WC pairs (1) Other IL (1)	12	5
77	IL_76757.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Major groove outside cWW, minor groove, intercalation pocket (2)	4	5
78	IL_09801.1 View exemplar Basepair signature: cWW-tSH-L-tHS-cWW History status: Exact match UAA/GAN related (1) UAA/GAN (1) UAA/GAN variation (1)	9	5
79	IL_88654.1 View exemplar Basepair signature: cWW-L-cWW-cWW History status: Exact match Decoding loop related (1)	7	4
80	IL_07899.1 View exemplar Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-R-cWW-cWW History status: Exact match	18	4
81	IL_51807.1 View exemplar Basepair signature: cWW-L-L-R-cWW History status: Exact match	7	4
82	IL_56837.1 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match	6	4
83	IL_84249.1 View exemplar Basepair signature: cWW-cWW-L-cSH-tWH-tHS-R-R-cWW History status: Exact match 7x7 Sarcin-Ricin with intercalated A; G-bulge (3)	14	4
84	IL_24191.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW-cWW History status: Exact match Other IL (1)	10	4
85	IL_40028.1 View exemplar Basepair signature: cWW-L-L-R-cWW History status: Exact match	7	4
86	IL_26073.1 View exemplar Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW History status: Exact match Kink-turn (2)	12	4
87	IL_91585.1 View exemplar Basepair signature: cWW-L-L-cWS-cWW History status: Exact match Minor groove platform (4)	7	4
88	IL_32362.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Minor groove platform with intercalation (1)	4	4
89	IL_80558.2 View exemplar Basepair signature: cWW-tSH-L-tHS-tHS-R-cWW History status: Exact match Quadruple sheared (3)	12	4
90	IL_18005.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match Isolated cWS basepair (2)	6	4
91	IL_42020.1 View exemplar Basepair signature: cWW-cWW-cSH-L-cWW History status: Exact match Other IL (1)	8	4
92	IL_58422.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	4
93	IL_33024.1 View exemplar Basepair signature: cWW-L-L-L-R-cWW History status: Exact match	8	4
94	IL_80327.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match	6	4
95	IL_51440.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged A (1)	5	4
96	IL_75157.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (2)	4	4
97	IL_82039.1 View exemplar Basepair signature: cWW-L-L-tHS-cWW History status: Exact match	8	4
98	IL_12670.1 View exemplar Basepair signature: cWW-L-L-tSH-tHS-L-L-R-cWW History status: Exact match Kink-turn (3)	13	4
99	IL_94577.1 View exemplar Basepair signature: cWW-tSH-tHS-L-L-R-R-cWW History status: Exact match	12	4
100	IL_76373.2 View exemplar Basepair signature: cWW-cWW-L-tSH-tHH-cSH-tWH-tHS-R-cWW History status: Exact match 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2) 9x9 Sarcin-Ricin with pseudoknotted region; G-bulge (1)	17	3
101	IL_61827.1 View exemplar Basepair signature: cWW-cWW-L-L-L-L-tSW-L-L-R-cWW History status: Exact match	13	3
102	IL_87777.1 View exemplar Basepair signature: cWW-L-cSH-R-cWW History status: Exact match	8	3
103	IL_25353.2 View exemplar Basepair signature: cWW-L-L-L-L-cWW History status: Exact match	8	3
104	IL_64942.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW History status: Exact match 8x6 Sarcin-Ricin with inserted Y; G-bulge (3)	14	3
105	IL_43649.1 View exemplar Basepair signature: cWW-tHH-L-cWS-R-cWW History status: Exact match Major groove minor groove platform with tHH (2) C-loop (1)	8	3
106	IL_55523.2 View exemplar Basepair signature: cWW-L-L-L-R-R-cWW History status: Exact match Multiple bulged bases with near cWW (1)	9	3
107	IL_66257.1 View exemplar Basepair signature: cWW-tSH-L-L-R-R-cWW History status: Exact match UAA/GAN with extra pair (1)	10	3
108	IL_17091.1 View exemplar Basepair signature: cWW-L-L-R-cWW History status: Exact match	7	3
109	IL_52203.1 View exemplar Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW History status: Exact match tSH-tHW-tWH-tHS (3)	12	3
110	IL_60036.1 View exemplar Basepair signature: cWW-L-L-L-cWW History status: Exact match Left turn (2)	7	3
111	IL_48361.2 View exemplar Basepair signature: cWW-cWW-tSS-tHS-tSS-L-L-L-tWH-tWH-L-L-L-tSS-tHS-cWW History status: Exact match	18	3
112	IL_21387.1 View exemplar Basepair signature: cWW-L-L-cSS-R-cWW History status: Exact match	7	3
113	IL_77584.1 View exemplar Basepair signature: cWW-cWH-tWS-cWW History status: Exact match cWH basepair and non-canonical AC (3)	8	3
114	IL_76349.1 View exemplar Basepair signature: cWW-L-L-R-R-cWW History status: Exact match	8	3
115	IL_51283.1 View exemplar Basepair signature: cWW-L-cWS-cWW History status: Exact match	7	3
116	IL_60003.1 View exemplar Basepair signature: cWW-L-L-L-L-R-R-cWW History status: Exact match	10	3
117	IL_40423.1 View exemplar Basepair signature: cWW-L-L-L-L-L-cWW-R-R-cWW History status: Exact match	13	2
118	IL_73617.1 View exemplar Basepair signature: cWW-cWW-L-tHS-cWW-R-cWW History status: Exact match	12	2
119	IL_17861.1 View exemplar Basepair signature: cWW-L-L-L-L-tHS-cWW-R-cWW History status: Exact match	13	2
120	IL_26237.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Other IL (1)	5	2
121	IL_23792.1 View exemplar Basepair signature: cWW-cSH-L-cWS-cWW History status: Exact match Major groove minor groove platform with intercalation; mini C-loop (2)	7	2
122	IL_95438.1 View exemplar Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW-cWW History status: Exact match tSH-tHW-tHH-tHS (1) 9x8 Sarcin-Ricin; G-bulge (1)	16	2
123	IL_61350.1 View exemplar Basepair signature: cWW-cWW-L-L-L-cSH-cWW History status: Exact match	10	2
124	IL_13587.1 View exemplar Basepair signature: cWW-L-L-L-L-cWW-cWW History status: Exact match	10	2
125	IL_82836.1 View exemplar Basepair signature: cWW-cWW-tWW-tSH-tHH-L-L-L-L-L-L-L-L-L-tWW-R-cWW History status: Exact match	20	2
126	IL_34701.1 View exemplar Basepair signature: cWW-L-tHS-cWW History status: Exact match	7	2
127	IL_36021.1 View exemplar Basepair signature: cWW-cWS-cWW History status: Exact match Minor groove platform (1) Major groove outside cWW, minor groove, intercalation pocket (1)	5	2
128	IL_18541.1 View exemplar Basepair signature: cWW-tSH-L-L-L-cWW History status: Exact match	9	2
129	IL_44894.1 View exemplar Basepair signature: cWW-cHW-L-cHW-L-cHW-cHW-L-R-cWW History status: Exact match	14	2
130	IL_00477.2 View exemplar Basepair signature: cWW-tWH-L-tHS-L-R-R-cWW History status: Exact match	12	2
131	IL_45887.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	5	2
132	IL_17264.1 View exemplar Basepair signature: cWW-L-L-L-R-cWW History status: Exact match	9	2
133	IL_17140.1 View exemplar Basepair signature: cWW-L-tHW-R-cWW History status: Exact match	8	2
134	IL_36703.1 View exemplar Basepair signature: cWW-tWW-cWW-tSH-tHH-L-L-cSH-L-L-L-L-L-L-tWW-R-R-cWW History status: Exact match	22	2
135	IL_88173.1 View exemplar Basepair signature: cWW-tSH-L-cWW-cWW-cWW History status: Exact match	11	2
136	IL_81553.1 View exemplar Basepair signature: cWW-cSH-L-L-R-cWW History status: Exact match	8	2
137	IL_72759.1 View exemplar Basepair signature: cWW-tSH-tSH-tSS-tHS-L-R-cWW History status: Exact match Kink-turn (1)	12	2
138	IL_23144.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Intercalated cWS (1) Other IL (1)	5	2
139	IL_30645.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: Exact match Triple sheared related (1)	11	2
140	IL_00183.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: Exact match	10	2
141	IL_96579.2 View exemplar Basepair signature: cWW-cWW-L-L-L-tWH-L-L-L-L-cWW History status: Exact match	12	2
142	IL_93061.1 View exemplar Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW History status: Exact match tWH-tWH-tHW-tHW (2)	14	2
143	IL_89063.1 View exemplar Basepair signature: cWW-cWW-tWH-L-L-L-cSH-cWW History status: Exact match	11	2
144	IL_60222.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	5	2
145	IL_08583.1 View exemplar Basepair signature: cWW-cWW-L-cWW History status: Exact match	7	2
146	IL_20637.1 View exemplar Basepair signature: cWW-tWH-tWH-cSH-L-cWS-cWW History status: Exact match C-loop with extra cWW pair (1)	9	2
147	IL_37174.2 View exemplar Basepair signature: cWW-L-L-cWW-R-R-cWW History status: Exact match	10	2
148	IL_89695.1 View exemplar Basepair signature: cWW-tWH-tWH-L-L-tWW-R-R-cWW History status: Exact match	13	2
149	IL_31668.1 View exemplar Basepair signature: cWW-cWH-tSH-tWH-tSS-tHW-L-cWH-cWW History status: Exact match	14	2
150	IL_37153.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	5	2
151	IL_48934.1 View exemplar Basepair signature: cWW-cWW-tSH-tWH-tHW-L-cWW-R-cWW History status: Exact match tSH-tHW-tHS with extra cWW pairs (1)	14	2
152	IL_35488.1 View exemplar Basepair signature: cWW-cWW-tWW-cWW History status: Exact match Tandem non-canonical cWW pairs (1) tWW and non-canonical cWW (1)	8	2
153	IL_09745.1 View exemplar Basepair signature: cWW-tSH-tWH-cSH-tWH-tHS-cWW History status: Exact match 8x6 Sarcin-Ricin with bulged A; G-bulge (2)	13	2
154	IL_30491.1 View exemplar Basepair signature: cWW-tWW-cSH-tWH-tHS-cWW History status: Exact match 6x5 Sarcin-Ricin; G-bulge (2)	11	2
155	IL_21759.1 View exemplar Basepair signature: cWW-L-L-cSH-cWW History status: Exact match	7	2
156	IL_30341.1 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match	6	2
157	IL_18207.1 View exemplar Basepair signature: cWW-tSW-L-R-R-R-cWW History status: Exact match	10	2
158	IL_98320.1 View exemplar Basepair signature: cWW-tSH-L-L-L-cWW-R-R-R-cWW History status: Exact match	14	2
159	IL_12700.1 View exemplar Basepair signature: cWW-L-L-L-cWW-cWW History status: Exact match Other IL (1)	9	2
160	IL_18466.1 View exemplar Basepair signature: cWW-L-tSH-tSH-tHS-R-cWW History status: Exact match	12	2
161	IL_94279.1 View exemplar Basepair signature: cWW-L-L-L-L-cWW-cWW-cSH-R-R-cSW History status: Exact match	13	2
162	IL_06791.1 View exemplar Basepair signature: cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW History status: Exact match	23	1
163	IL_29650.1 View exemplar Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW History status: Exact match	12	1
164	IL_11095.1 View exemplar Basepair signature: cWW-cWW-L-L-L-L-L-L-L-L-L-L-L-L-L-L-R-R-R-R-cWW History status: Exact match	22	1
165	IL_39619.1 View exemplar Basepair signature: cWW-L-tHW-tHW-L-L-R-R-R-cWW History status: Exact match	14	1
166	IL_97309.1 View exemplar Basepair signature: cWW-L-L-L-L-R-cWW History status: Exact match	9	1
167	IL_91561.1 View exemplar Basepair signature: cWW-L-L-L-cSS-L-cWW-R-R-cWW History status: Exact match	13	1
168	IL_02696.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW History status: Exact match	13	1
169	IL_36879.1 View exemplar Basepair signature: cWW-tSS-L-tSH-tSS-tHW-tHS-cWW-cWW History status: Exact match Kink-turn (1)	14	1
170	IL_83846.1 View exemplar Basepair signature: cWW-cSS-tSS-L-L-tHH-tHS-tSS-L-R-cWW History status: Exact match	13	1
171	IL_53725.1 View exemplar Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW History status: Exact match	15	1
172	IL_37407.1 View exemplar Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW History status: Exact match	14	1
173	IL_97816.1 View exemplar Basepair signature: cWW-cWW-tWW-L-L-L-L-L-L-L-L-L-L-L-L-R-R-cWW History status: Exact match	20	1
174	IL_61145.1 View exemplar Basepair signature: cWW-cSH-L-tWH-cSH-cWH-cHW-cWW-cSH-R-cWW History status: Exact match	15	1
175	IL_96889.1 View exemplar Basepair signature: cWW-L-L-R-cWW History status: Exact match	7	1
176	IL_24540.1 View exemplar Basepair signature: cWW-L-L-L-L-cWW History status: Exact match	8	1
177	IL_02258.1 View exemplar Basepair signature: cWW-L-L-L-cWW History status: Exact match	7	1
178	IL_92029.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: Exact match	7	1
179	IL_29564.1 View exemplar Basepair signature: cWW-tSH-tHH-tHS-cWW History status: Exact match	10	1
180	IL_89927.1 View exemplar Basepair signature: cWW-cWW-L-L-L-L-L-L-R-R-R-R-cWW History status: Exact match	16	1
181	IL_04387.1 View exemplar Basepair signature: cWW-L-L-L-R-cWW History status: Exact match	8	1
182	IL_20611.1 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW History status: Exact match	18	1
183	IL_43139.1 View exemplar Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW History status: Exact match	14	1
184	IL_59693.1 View exemplar Basepair signature: cWW-tWW-L-L-L-L-L-L-L-L-L-tWW-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	24	1
185	IL_89834.1 View exemplar Basepair signature: cWW-L-L-L-R-R-cWW History status: Exact match	9	1
186	IL_64834.1 View exemplar Basepair signature: cWW-L-L-L-R-R-R-cWW History status: Exact match	10	1
187	IL_56925.1 View exemplar Basepair signature: cWW-cHW-tHS-cWW History status: Exact match	7	1
188	IL_41198.1 View exemplar Basepair signature: cWW-tSH-tHS-tWS-cWW History status: Exact match tSH-tHS-tWS (1)	10	1
189	IL_49661.1 View exemplar Basepair signature: cWW-tSH-tHH-L-tHS-cWW History status: Exact match	11	1
190	IL_53567.1 View exemplar Basepair signature: cWW-cWW-cSS-cWW-cWW-cWW-cWW-tSS-cWW-L-L-L-L-L-L-L-cWW-cSS-L-L-cWW-R-R-cWW History status: Exact match	26	1
191	IL_28731.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Stack outside cWW (1)	5	1
192	IL_10068.1 View exemplar Basepair signature: cWW-L-R-R-R-R-R-cWW History status: Exact match	10	1
193	IL_00638.1 View exemplar Basepair signature: cWW-L-tSH-L-cSS-tSS-tWW-R-cWW History status: Exact match	11	1
194	IL_24732.1 View exemplar Basepair signature: cWW-tWW-L-tWW-L-cWW History status: Exact match	10	1
195	IL_50384.1 View exemplar Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW History status: Exact match	11	1
196	IL_52294.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-cWW History status: Exact match	10	1
197	IL_92407.1 View exemplar Basepair signature: cWW-cWW-cHW-L-L-L-L-L-L-L-L-cWW History status: Exact match	14	1
198	IL_38933.1 View exemplar Basepair signature: cWW-cWW-L-L-L-tSS-L-L-tSH-tHS-R-cWW History status: Exact match	15	1
199	IL_96016.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHS-cWW History status: Exact match	11	1
200	IL_51027.1 View exemplar Basepair signature: cWW-L-L-L-tSH-L-cWW-cWW-R-R-R-cWW History status: Exact match Kink-turn (1)	17	1
201	IL_95486.1 View exemplar Basepair signature: cWW-cWW-tHH-cWW History status: Exact match	8	1
202	IL_79739.1 View exemplar Basepair signature: cWW-R-cSW-R-R-tHS-cWW History status: Exact match	11	1
203	IL_33256.1 View exemplar Basepair signature: cWW-tHW-L-L-L-L-R-cSH-R-cWW History status: Exact match	12	1
204	IL_06888.1 View exemplar Basepair signature: cWW-cWW-cWW-tSH-tHH-L-L-L-L-L-L-L-L-L-cWW-R-R-R-R-R-R-cWW History status: Exact match	25	1
205	IL_81696.1 View exemplar Basepair signature: cWW-L-cWW-R-cWW History status: Exact match	8	1
206	IL_35646.1 View exemplar Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW History status: Exact match	11	1
207	IL_78395.1 View exemplar Basepair signature: cWW-tSH-L-L-R-cWW History status: Exact match	9	1
208	IL_20863.1 View exemplar Basepair signature: cWW-cWW-L-L-R-R-cWW History status: Exact match	10	1
209	IL_63567.1 View exemplar Basepair signature: cWW-L-cSS-tWH-tHW-cWW-cWW History status: Exact match Kink-turn related (1)	11	1
210	IL_30962.1 View exemplar Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW History status: Exact match	13	1
211	IL_28759.1 View exemplar Basepair signature: cWW-L-L-L-L-L-R-R-cWW History status: Exact match	11	1
212	IL_72664.1 View exemplar Basepair signature: cWW-cSH-L-cWW History status: Exact match Minor groove platform (1)	6	1
213	IL_92732.1 View exemplar Basepair signature: cWW-cWW-L-L-L-L-L-L-L-L-L-L-L-L-L-R-R-R-R-R-R-cWW History status: Exact match	23	1
214	IL_93290.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW History status: Exact match	14	1
215	IL_63725.1 View exemplar Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW History status: Exact match	14	1
216	IL_07665.1 View exemplar Basepair signature: cWW-cWW-tSS-L-L-L-tHH-L-L-L-L-L-L-L-L-L-L-L-cWW-L-L-L-L-L-L-L-L-L-L-L-L-L-L-L-L-L-L-L-R-R-cWW History status: Exact match	45	1
217	IL_20512.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-R-R-R-R-R-cWW History status: Exact match	15	1
218	IL_80033.1 View exemplar Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW History status: Exact match tWH-tWH-tHW-tHW (1)	12	1
219	IL_50285.1 View exemplar Basepair signature: cWW-L-L-L-cWW-L-bif-cWW History status: Exact match Vitamin B12 Aptamer (1)	11	1
220	IL_14943.1 View exemplar Basepair signature: cWW-tWH-L-L-L-cWW History status: Exact match Major groove platform; stack outside cWW (1)	8	1
221	IL_72042.1 View exemplar Basepair signature: cWW-tSH-tSH-cSH-cWW History status: Exact match	8	1
222	IL_71836.1 View exemplar Basepair signature: cWW-tHW-tHS-cWW-cWW History status: Exact match	10	1
223	IL_43925.1 View exemplar Basepair signature: cWW-L-L-L-L-cSW-cWW-cSH-R-R-cWW History status: Exact match	14	1
224	IL_78328.1 View exemplar Basepair signature: cWW-L-L-L-R-R-cWW History status: Exact match	9	1
225	IL_29291.1 View exemplar Basepair signature: cWW-cSS-L-L-tSH-tSS-L-R-cWW History status: Exact match Kink-turn (1)	11	1
226	IL_95564.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHS-cWW History status: Exact match	11	1
227	IL_78655.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHW-L-R-R-R-R-R-cWW History status: Exact match	17	1
228	IL_28732.1 View exemplar Basepair signature: cWW-L-L-L-L-R-R-R-cWW History status: Exact match	11	1
229	IL_19944.1 View exemplar Basepair signature: cWW-L-cWW-cWW History status: Exact match	7	1
230	IL_20414.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-tSS-cWW History status: Exact match	12	1
231	IL_57464.1 View exemplar Basepair signature: cWW-tWH-tHH-tHS-cWW History status: Exact match	10	1
232	IL_24876.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R-cWW History status: Exact match	10	1
233	IL_07512.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: Exact match Double sheared (1)	8	1
234	IL_01235.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-R-R-R-R-R-cWW History status: Exact match	15	1
235	IL_46719.1 View exemplar Basepair signature: cWW-cWW-cSH-tSH-tHW-tHH-cWH-L-L-L-L-R-cSH-cWW History status: Exact match 7x11 Sarcin-Ricin with pseudoknotted region; G-bulge (1)	18	1
236	IL_59244.1 View exemplar Basepair signature: cWW-R-bif-tHW-tHS-cWW History status: Exact match	10	1
237	IL_90173.1 View exemplar Basepair signature: cWW-L-tSW-tHH-cSH-tWH-tHS-R-cWW History status: Exact match	15	1
238	IL_24269.1 View exemplar Basepair signature: cWW-tWW-tWW-tSS-L-cWW History status: Exact match Kink-turn related (1)	11	1
239	IL_98681.1 View exemplar Basepair signature: cWW-cWW-R-R-cSH-R-bif-tWH-R-R-R-R-cWS-cWW History status: Exact match	21	1
240	IL_09665.1 View exemplar Basepair signature: cWW-tWH-cSW-L-L-tHS-R-R-cWW History status: Exact match	13	1
241	IL_37918.1 View exemplar Basepair signature: cWW-tSH-tHW-tWW-cWW History status: Exact match tSH-tHW-tWW (1)	10	1
242	IL_19656.1 View exemplar Basepair signature: cWW-cSH-cWS-cWW-cWW History status: Exact match	9	1
243	IL_28619.1 View exemplar Basepair signature: cWW-L-L-L-R-R-cWW History status: Exact match	9	1
244	IL_73246.1 View exemplar Basepair signature: cWW-cWW-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	13	1
245	IL_20315.1 View exemplar Basepair signature: cWW-L-L-L-L-R-cWW History status: Exact match	9	1
246	IL_93484.1 View exemplar Basepair signature: cWW-cWS-L-L-cWW History status: Exact match	8	1
247	IL_20373.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: Exact match	10	1
248	IL_14530.1 View exemplar Basepair signature: cWW-L-tWH-tWH-L-L-R-R-cWW History status: Exact match	13	1
249	IL_24130.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L-R-R-R-cWW History status: Exact match	14	1
250	IL_41282.1 View exemplar Basepair signature: cWW-cWW-L-tWW-L-L-R-R-cWW History status: Exact match	13	1
251	IL_12243.1 View exemplar Basepair signature: cWW-tSH-L-L-L-L-L-cWW-R-R-cWW History status: Exact match	15	1
252	IL_70393.1 View exemplar Basepair signature: cWW-tHH-L-L-L-L-R-R-R-R-cWW History status: Exact match	14	1
253	IL_95289.1 View exemplar Basepair signature: cWW-L-L-tHS-R-cWW History status: Exact match	9	1
254	IL_06260.1 View exemplar Basepair signature: cWW-tSW-L-L-L-L-L-L-L-L-tSW-L-L-L-L-L-L-L-L-L-L-tHH-tHS-cWW History status: Exact match	28	1

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Nucleotide numbers

Exact match 254;

Internal Loop Motif Atlas Release 4.30 Download Csv Json

Internal Loop Motif Atlas Release 4.30

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